Experiment: With vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_796 and Pf6N2E2_797 are separated by 15 nucleotides Pf6N2E2_797 and Pf6N2E2_798 are separated by 32 nucleotides Pf6N2E2_798 and Pf6N2E2_799 overlap by 48 nucleotides
Pf6N2E2_796 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 927,383 to 928,276
_796
Pf6N2E2_797 - ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD, at 928,292 to 930,259
_797
Pf6N2E2_798 - Ku domain protein, at 930,292 to 931,182
_798
Pf6N2E2_799 - hypothetical protein, at 931,135 to 931,344
_799
Position (kb) 928
929
930
931 Strain fitness (log2 ratio) -2
-1
0
1
2 at 927.293 kb on + strand at 927.294 kb on - strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.408 kb on - strand at 927.408 kb on - strand at 927.408 kb on - strand at 927.425 kb on + strand at 927.426 kb on - strand at 927.455 kb on - strand at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.516 kb on - strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.754 kb on - strand, within Pf6N2E2_796 at 927.754 kb on - strand, within Pf6N2E2_796 at 927.771 kb on + strand, within Pf6N2E2_796 at 927.852 kb on - strand, within Pf6N2E2_796 at 927.908 kb on + strand, within Pf6N2E2_796 at 927.908 kb on + strand, within Pf6N2E2_796 at 927.909 kb on - strand, within Pf6N2E2_796 at 927.932 kb on + strand, within Pf6N2E2_796 at 927.932 kb on + strand, within Pf6N2E2_796 at 927.983 kb on + strand, within Pf6N2E2_796 at 928.006 kb on + strand, within Pf6N2E2_796 at 928.007 kb on - strand, within Pf6N2E2_796 at 928.166 kb on + strand, within Pf6N2E2_796 at 928.174 kb on - strand, within Pf6N2E2_796 at 928.217 kb on + strand at 928.217 kb on + strand at 928.217 kb on + strand at 928.217 kb on + strand at 928.218 kb on - strand at 928.220 kb on + strand at 928.221 kb on - strand at 928.264 kb on + strand at 928.265 kb on - strand at 928.265 kb on - strand at 928.287 kb on + strand at 928.288 kb on - strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.543 kb on - strand, within Pf6N2E2_797 at 928.630 kb on + strand, within Pf6N2E2_797 at 928.630 kb on + strand, within Pf6N2E2_797 at 928.631 kb on - strand, within Pf6N2E2_797 at 929.103 kb on + strand, within Pf6N2E2_797 at 929.104 kb on - strand, within Pf6N2E2_797 at 929.104 kb on - strand, within Pf6N2E2_797 at 929.104 kb on - strand, within Pf6N2E2_797 at 929.104 kb on - strand, within Pf6N2E2_797 at 929.104 kb on - strand, within Pf6N2E2_797 at 929.106 kb on + strand, within Pf6N2E2_797 at 929.456 kb on + strand, within Pf6N2E2_797 at 929.456 kb on + strand, within Pf6N2E2_797 at 929.456 kb on + strand, within Pf6N2E2_797 at 929.456 kb on + strand, within Pf6N2E2_797 at 929.456 kb on + strand, within Pf6N2E2_797 at 929.456 kb on + strand, within Pf6N2E2_797 at 929.456 kb on + strand, within Pf6N2E2_797 at 929.456 kb on + strand, within Pf6N2E2_797 at 929.457 kb on - strand, within Pf6N2E2_797 at 929.505 kb on + strand, within Pf6N2E2_797 at 929.505 kb on + strand, within Pf6N2E2_797 at 929.624 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.650 kb on + strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.651 kb on - strand, within Pf6N2E2_797 at 929.652 kb on + strand, within Pf6N2E2_797 at 929.865 kb on + strand, within Pf6N2E2_797 at 929.865 kb on + strand, within Pf6N2E2_797 at 929.866 kb on - strand, within Pf6N2E2_797 at 930.108 kb on + strand at 930.109 kb on - strand at 930.274 kb on + strand at 930.274 kb on + strand at 930.275 kb on - strand at 930.673 kb on + strand, within Pf6N2E2_798 at 930.673 kb on + strand, within Pf6N2E2_798 at 930.673 kb on + strand, within Pf6N2E2_798 at 930.674 kb on - strand, within Pf6N2E2_798 at 930.674 kb on - strand, within Pf6N2E2_798 at 930.815 kb on + strand, within Pf6N2E2_798 at 930.816 kb on - strand, within Pf6N2E2_798 at 930.816 kb on - strand, within Pf6N2E2_798 at 930.816 kb on - strand, within Pf6N2E2_798 at 930.816 kb on - strand, within Pf6N2E2_798 at 930.968 kb on + strand, within Pf6N2E2_798 at 930.968 kb on + strand, within Pf6N2E2_798
Per-strain Table
Position Strand Gene LocusTag Fraction With vitamins t2 remove 927,293 + -0.5 927,294 - +0.1 927,407 + -0.9 927,407 + -0.8 927,407 + -1.5 927,407 + +1.2 927,407 + +1.1 927,408 - -0.5 927,408 - -0.5 927,408 - +2.3 927,425 + +1.4 927,426 - -0.5 927,455 - -0.5 927,515 + Pf6N2E2_796 0.15 +0.1 927,515 + Pf6N2E2_796 0.15 +1.5 927,515 + Pf6N2E2_796 0.15 -2.1 927,515 + Pf6N2E2_796 0.15 +0.2 927,516 - Pf6N2E2_796 0.15 +0.1 927,753 + Pf6N2E2_796 0.41 +0.5 927,753 + Pf6N2E2_796 0.41 +0.5 927,753 + Pf6N2E2_796 0.41 -2.5 927,754 - Pf6N2E2_796 0.41 -0.5 927,754 - Pf6N2E2_796 0.41 -0.5 927,771 + Pf6N2E2_796 0.43 -1.5 927,852 - Pf6N2E2_796 0.52 -0.5 927,908 + Pf6N2E2_796 0.59 -0.8 927,908 + Pf6N2E2_796 0.59 -0.5 927,909 - Pf6N2E2_796 0.59 -0.5 927,932 + Pf6N2E2_796 0.61 +0.1 927,932 + Pf6N2E2_796 0.61 -0.5 927,983 + Pf6N2E2_796 0.67 +0.2 928,006 + Pf6N2E2_796 0.70 -0.9 928,007 - Pf6N2E2_796 0.70 -1.3 928,166 + Pf6N2E2_796 0.88 +0.8 928,174 - Pf6N2E2_796 0.88 +0.1 928,217 + -0.5 928,217 + -0.5 928,217 + -0.3 928,217 + +1.8 928,218 - -1.7 928,220 + -0.9 928,221 - -0.7 928,264 + -0.5 928,265 - -1.2 928,265 - +0.9 928,287 + -0.1 928,288 - +0.8 928,410 + -0.3 928,410 + -0.5 928,410 + +0.4 928,410 + +0.1 928,410 + -0.5 928,410 + -1.3 928,410 + -0.8 928,410 + -0.5 928,410 + -0.5 928,411 - -0.5 928,411 - -0.8 928,411 - -0.5 928,411 - +0.5 928,411 - -0.5 928,411 - +1.1 928,411 - -0.5 928,411 - -1.3 928,543 - Pf6N2E2_797 0.13 -2.1 928,630 + Pf6N2E2_797 0.17 -1.5 928,630 + Pf6N2E2_797 0.17 +0.5 928,631 - Pf6N2E2_797 0.17 -1.5 929,103 + Pf6N2E2_797 0.41 -0.5 929,104 - Pf6N2E2_797 0.41 +1.8 929,104 - Pf6N2E2_797 0.41 -0.5 929,104 - Pf6N2E2_797 0.41 -1.1 929,104 - Pf6N2E2_797 0.41 -1.1 929,104 - Pf6N2E2_797 0.41 -0.1 929,106 + Pf6N2E2_797 0.41 -0.8 929,456 + Pf6N2E2_797 0.59 -0.5 929,456 + Pf6N2E2_797 0.59 +0.5 929,456 + Pf6N2E2_797 0.59 +2.1 929,456 + Pf6N2E2_797 0.59 -1.1 929,456 + Pf6N2E2_797 0.59 +0.3 929,456 + Pf6N2E2_797 0.59 +0.5 929,456 + Pf6N2E2_797 0.59 -1.5 929,456 + Pf6N2E2_797 0.59 +0.5 929,457 - Pf6N2E2_797 0.59 -0.5 929,505 + Pf6N2E2_797 0.62 -2.1 929,505 + Pf6N2E2_797 0.62 +1.5 929,624 + Pf6N2E2_797 0.68 -0.5 929,650 + Pf6N2E2_797 0.69 +1.1 929,650 + Pf6N2E2_797 0.69 -0.1 929,650 + Pf6N2E2_797 0.69 -2.1 929,650 + Pf6N2E2_797 0.69 +0.7 929,650 + Pf6N2E2_797 0.69 +1.5 929,650 + Pf6N2E2_797 0.69 -0.5 929,650 + Pf6N2E2_797 0.69 -0.8 929,650 + Pf6N2E2_797 0.69 -0.5 929,650 + Pf6N2E2_797 0.69 -0.1 929,650 + Pf6N2E2_797 0.69 -0.9 929,650 + Pf6N2E2_797 0.69 -1.8 929,650 + Pf6N2E2_797 0.69 +0.5 929,650 + Pf6N2E2_797 0.69 -0.5 929,650 + Pf6N2E2_797 0.69 -0.7 929,650 + Pf6N2E2_797 0.69 +1.3 929,651 - Pf6N2E2_797 0.69 -0.5 929,651 - Pf6N2E2_797 0.69 +0.5 929,651 - Pf6N2E2_797 0.69 -1.1 929,651 - Pf6N2E2_797 0.69 -0.5 929,651 - Pf6N2E2_797 0.69 +0.5 929,651 - Pf6N2E2_797 0.69 -0.5 929,651 - Pf6N2E2_797 0.69 +1.8 929,651 - Pf6N2E2_797 0.69 -0.5 929,651 - Pf6N2E2_797 0.69 -0.1 929,651 - Pf6N2E2_797 0.69 +1.3 929,651 - Pf6N2E2_797 0.69 +1.1 929,651 - Pf6N2E2_797 0.69 -1.0 929,651 - Pf6N2E2_797 0.69 -0.2 929,651 - Pf6N2E2_797 0.69 -0.2 929,652 + Pf6N2E2_797 0.69 -0.5 929,865 + Pf6N2E2_797 0.80 +1.5 929,865 + Pf6N2E2_797 0.80 +1.8 929,866 - Pf6N2E2_797 0.80 -2.3 930,108 + -0.5 930,109 - -1.5 930,274 + +0.1 930,274 + +0.1 930,275 - -1.2 930,673 + Pf6N2E2_798 0.43 +0.5 930,673 + Pf6N2E2_798 0.43 -1.1 930,673 + Pf6N2E2_798 0.43 +0.5 930,674 - Pf6N2E2_798 0.43 -0.5 930,674 - Pf6N2E2_798 0.43 +2.3 930,815 + Pf6N2E2_798 0.59 +1.8 930,816 - Pf6N2E2_798 0.59 -0.5 930,816 - Pf6N2E2_798 0.59 +0.5 930,816 - Pf6N2E2_798 0.59 +0.5 930,816 - Pf6N2E2_798 0.59 -0.1 930,968 + Pf6N2E2_798 0.76 -0.5 930,968 + Pf6N2E2_798 0.76 +1.5
Or see this region's nucleotide sequence