Experiment: MoLS4 without Folic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1521 and DVU1522 are separated by 429 nucleotides DVU1522 and DVU1523 are separated by 45 nucleotides DVU1523 and DVU1524 are separated by 2 nucleotides DVU1524 and DVU1525 are separated by 19 nucleotides
DVU1521: DVU1521 - hypothetical protein (TIGR), at 1,590,141 to 1,590,320
DVU1521
DVU1522: DVU1522 - hypothetical protein (TIGR), at 1,590,750 to 1,591,145
DVU1522
DVU1523: DVU1523 - hypothetical protein (TIGR), at 1,591,191 to 1,592,219
DVU1523
DVU1524: DVU1524 - conserved hypothetical protein (TIGR), at 1,592,222 to 1,593,118
DVU1524
DVU1525: DVU1525 - conserved domain protein (TIGR), at 1,593,138 to 1,594,130
DVU1525
Position (kb)
1591
1592
1593 Strain fitness (log2 ratio)
-1
0
1
2 at 1590.493 kb on + strand at 1590.501 kb on + strand at 1590.509 kb on - strand at 1590.524 kb on + strand at 1590.535 kb on - strand at 1590.726 kb on - strand at 1590.768 kb on + strand at 1590.768 kb on + strand at 1590.786 kb on - strand at 1590.792 kb on + strand, within DVU1522 at 1590.829 kb on - strand, within DVU1522 at 1590.869 kb on - strand, within DVU1522 at 1590.875 kb on - strand, within DVU1522 at 1590.896 kb on - strand, within DVU1522 at 1590.998 kb on + strand, within DVU1522 at 1591.006 kb on - strand, within DVU1522 at 1591.044 kb on - strand, within DVU1522 at 1591.066 kb on - strand, within DVU1522 at 1591.091 kb on + strand, within DVU1522 at 1591.147 kb on + strand at 1591.189 kb on + strand at 1591.239 kb on - strand at 1591.268 kb on - strand at 1591.293 kb on - strand at 1591.331 kb on + strand, within DVU1523 at 1591.339 kb on - strand, within DVU1523 at 1591.339 kb on - strand, within DVU1523 at 1591.370 kb on + strand, within DVU1523 at 1591.370 kb on + strand, within DVU1523 at 1591.378 kb on - strand, within DVU1523 at 1591.378 kb on - strand, within DVU1523 at 1591.378 kb on - strand, within DVU1523 at 1591.381 kb on + strand, within DVU1523 at 1591.389 kb on - strand, within DVU1523 at 1591.549 kb on + strand, within DVU1523 at 1591.585 kb on - strand, within DVU1523 at 1591.603 kb on - strand, within DVU1523 at 1591.743 kb on - strand, within DVU1523 at 1591.775 kb on + strand, within DVU1523 at 1591.783 kb on - strand, within DVU1523 at 1591.813 kb on - strand, within DVU1523 at 1591.824 kb on + strand, within DVU1523 at 1591.832 kb on - strand, within DVU1523 at 1591.866 kb on + strand, within DVU1523 at 1591.984 kb on - strand, within DVU1523 at 1592.001 kb on - strand, within DVU1523 at 1592.001 kb on - strand, within DVU1523 at 1592.098 kb on + strand, within DVU1523 at 1592.106 kb on - strand, within DVU1523 at 1592.213 kb on + strand at 1592.213 kb on + strand at 1592.221 kb on - strand at 1592.221 kb on - strand at 1592.221 kb on - strand at 1592.221 kb on - strand at 1592.221 kb on - strand at 1592.319 kb on + strand, within DVU1524 at 1592.398 kb on - strand, within DVU1524 at 1592.407 kb on + strand, within DVU1524 at 1592.466 kb on - strand, within DVU1524 at 1592.558 kb on + strand, within DVU1524 at 1592.588 kb on - strand, within DVU1524 at 1592.633 kb on - strand, within DVU1524 at 1592.650 kb on + strand, within DVU1524 at 1592.659 kb on + strand, within DVU1524 at 1592.673 kb on - strand, within DVU1524 at 1592.729 kb on - strand, within DVU1524 at 1592.743 kb on - strand, within DVU1524 at 1592.748 kb on - strand, within DVU1524 at 1592.748 kb on - strand, within DVU1524 at 1592.764 kb on + strand, within DVU1524 at 1592.764 kb on + strand, within DVU1524 at 1592.807 kb on + strand, within DVU1524 at 1592.817 kb on - strand, within DVU1524 at 1592.875 kb on + strand, within DVU1524 at 1592.973 kb on - strand, within DVU1524 at 1592.992 kb on + strand, within DVU1524 at 1593.000 kb on - strand, within DVU1524 at 1593.039 kb on + strand at 1593.064 kb on + strand at 1593.072 kb on - strand at 1593.072 kb on - strand at 1593.072 kb on - strand at 1593.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without Folic remove 1,590,493 + +1.1 1,590,501 + +0.8 1,590,509 - +0.0 1,590,524 + -0.6 1,590,535 - -0.6 1,590,726 - -0.7 1,590,768 + -0.7 1,590,768 + +0.2 1,590,786 - +1.4 1,590,792 + DVU1522 0.11 -0.7 1,590,829 - DVU1522 0.20 -0.1 1,590,869 - DVU1522 0.30 +0.3 1,590,875 - DVU1522 0.32 -0.7 1,590,896 - DVU1522 0.37 -1.2 1,590,998 + DVU1522 0.63 -0.0 1,591,006 - DVU1522 0.65 +1.3 1,591,044 - DVU1522 0.74 -0.3 1,591,066 - DVU1522 0.80 -0.2 1,591,091 + DVU1522 0.86 -0.3 1,591,147 + -0.1 1,591,189 + +0.2 1,591,239 - +0.6 1,591,268 - -0.1 1,591,293 - +0.4 1,591,331 + DVU1523 0.14 +0.8 1,591,339 - DVU1523 0.14 +0.1 1,591,339 - DVU1523 0.14 -0.6 1,591,370 + DVU1523 0.17 +0.1 1,591,370 + DVU1523 0.17 +0.0 1,591,378 - DVU1523 0.18 +0.5 1,591,378 - DVU1523 0.18 -0.5 1,591,378 - DVU1523 0.18 +0.1 1,591,381 + DVU1523 0.18 -1.0 1,591,389 - DVU1523 0.19 -0.7 1,591,549 + DVU1523 0.35 -0.1 1,591,585 - DVU1523 0.38 +1.0 1,591,603 - DVU1523 0.40 -0.0 1,591,743 - DVU1523 0.54 -0.8 1,591,775 + DVU1523 0.57 +0.4 1,591,783 - DVU1523 0.58 +0.9 1,591,813 - DVU1523 0.60 +1.6 1,591,824 + DVU1523 0.62 +0.4 1,591,832 - DVU1523 0.62 -0.1 1,591,866 + DVU1523 0.66 -0.6 1,591,984 - DVU1523 0.77 -0.4 1,592,001 - DVU1523 0.79 -0.2 1,592,001 - DVU1523 0.79 -1.0 1,592,098 + DVU1523 0.88 -0.4 1,592,106 - DVU1523 0.89 +0.7 1,592,213 + -0.3 1,592,213 + -0.5 1,592,221 - -0.1 1,592,221 - -0.1 1,592,221 - -0.9 1,592,221 - -0.3 1,592,221 - -0.6 1,592,319 + DVU1524 0.11 +1.9 1,592,398 - DVU1524 0.20 +0.2 1,592,407 + DVU1524 0.21 -0.3 1,592,466 - DVU1524 0.27 -0.9 1,592,558 + DVU1524 0.37 -0.4 1,592,588 - DVU1524 0.41 -0.2 1,592,633 - DVU1524 0.46 +0.0 1,592,650 + DVU1524 0.48 +0.8 1,592,659 + DVU1524 0.49 +0.1 1,592,673 - DVU1524 0.50 -0.0 1,592,729 - DVU1524 0.57 -0.5 1,592,743 - DVU1524 0.58 -0.4 1,592,748 - DVU1524 0.59 -0.3 1,592,748 - DVU1524 0.59 -0.2 1,592,764 + DVU1524 0.60 -0.1 1,592,764 + DVU1524 0.60 -0.5 1,592,807 + DVU1524 0.65 -1.5 1,592,817 - DVU1524 0.66 -0.2 1,592,875 + DVU1524 0.73 -0.9 1,592,973 - DVU1524 0.84 +0.0 1,592,992 + DVU1524 0.86 +0.4 1,593,000 - DVU1524 0.87 -0.1 1,593,039 + -0.4 1,593,064 + -0.9 1,593,072 - +0.6 1,593,072 - +0.1 1,593,072 - +0.1 1,593,200 - -0.2
Or see this region's nucleotide sequence