Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_576

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_575 and Pf6N2E2_576 are separated by 138 nucleotidesPf6N2E2_576 and Pf6N2E2_577 are separated by 642 nucleotides Pf6N2E2_575 - Transcriptional regulator, AraC family, at 649,505 to 650,329 _575 Pf6N2E2_576 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 650,468 to 651,430 _576 Pf6N2E2_577 - Mobile element protein, at 652,073 to 653,641 _577 Position (kb) 650 651 652Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 649.504 kb on - strandat 649.516 kb on - strandat 649.710 kb on + strand, within Pf6N2E2_575at 649.710 kb on + strand, within Pf6N2E2_575at 649.711 kb on - strand, within Pf6N2E2_575at 649.780 kb on + strand, within Pf6N2E2_575at 649.781 kb on - strand, within Pf6N2E2_575at 649.914 kb on - strand, within Pf6N2E2_575at 649.926 kb on + strand, within Pf6N2E2_575at 650.052 kb on + strand, within Pf6N2E2_575at 650.052 kb on + strand, within Pf6N2E2_575at 650.052 kb on + strand, within Pf6N2E2_575at 650.053 kb on - strand, within Pf6N2E2_575at 650.053 kb on - strand, within Pf6N2E2_575at 650.053 kb on - strand, within Pf6N2E2_575at 650.064 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.170 kb on - strand, within Pf6N2E2_575at 650.170 kb on - strand, within Pf6N2E2_575at 650.170 kb on - strand, within Pf6N2E2_575at 650.366 kb on + strandat 650.366 kb on + strandat 650.366 kb on + strandat 650.367 kb on - strandat 650.367 kb on - strandat 650.369 kb on + strandat 650.369 kb on + strandat 650.836 kb on + strand, within Pf6N2E2_576at 650.848 kb on + strand, within Pf6N2E2_576at 650.848 kb on + strand, within Pf6N2E2_576at 650.848 kb on + strand, within Pf6N2E2_576at 650.848 kb on + strand, within Pf6N2E2_576at 650.848 kb on + strand, within Pf6N2E2_576at 651.157 kb on + strand, within Pf6N2E2_576at 651.158 kb on - strand, within Pf6N2E2_576at 651.308 kb on + strand, within Pf6N2E2_576at 651.375 kb on + strandat 651.376 kb on - strandat 651.376 kb on - strandat 651.401 kb on + strandat 651.401 kb on + strandat 651.401 kb on + strandat 651.402 kb on - strandat 651.429 kb on - strandat 651.461 kb on + strandat 651.461 kb on + strandat 651.461 kb on + strandat 651.462 kb on - strandat 651.462 kb on - strandat 651.476 kb on + strandat 651.476 kb on + strandat 651.476 kb on + strandat 651.477 kb on - strandat 651.477 kb on - strandat 651.511 kb on + strandat 651.512 kb on - strandat 651.528 kb on - strandat 651.564 kb on - strandat 651.564 kb on - strandat 651.601 kb on + strandat 651.604 kb on - strandat 651.604 kb on - strandat 651.645 kb on - strandat 651.645 kb on - strandat 651.645 kb on - strandat 651.708 kb on + strandat 651.708 kb on + strandat 651.708 kb on + strandat 651.708 kb on + strandat 651.711 kb on - strandat 651.711 kb on - strandat 651.782 kb on - strandat 651.824 kb on + strandat 651.840 kb on - strandat 651.840 kb on - strandat 651.840 kb on - strandat 651.840 kb on - strandat 651.844 kb on + strandat 651.844 kb on + strandat 651.848 kb on + strandat 651.849 kb on - strandat 651.849 kb on - strandat 651.866 kb on + strandat 651.875 kb on + strandat 651.876 kb on - strandat 651.876 kb on - strandat 651.936 kb on + strandat 651.936 kb on + strandat 651.937 kb on - strandat 651.946 kb on + strandat 651.946 kb on + strandat 651.947 kb on - strandat 651.985 kb on + strandat 651.985 kb on + strandat 651.986 kb on - strandat 651.986 kb on - strandat 652.025 kb on - strandat 652.025 kb on - strandat 652.039 kb on + strandat 652.040 kb on - strandat 652.040 kb on - strandat 652.155 kb on - strandat 652.155 kb on - strandat 652.159 kb on - strandat 652.304 kb on - strand, within Pf6N2E2_577at 652.304 kb on - strand, within Pf6N2E2_577at 652.304 kb on - strand, within Pf6N2E2_577at 652.368 kb on + strand, within Pf6N2E2_577at 652.368 kb on + strand, within Pf6N2E2_577at 652.369 kb on - strand, within Pf6N2E2_577

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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649,504 - +0.3
649,516 - +0.6
649,710 + Pf6N2E2_575 0.25 -2.4
649,710 + Pf6N2E2_575 0.25 -0.4
649,711 - Pf6N2E2_575 0.25 +0.5
649,780 + Pf6N2E2_575 0.33 -1.6
649,781 - Pf6N2E2_575 0.33 -0.8
649,914 - Pf6N2E2_575 0.50 -0.3
649,926 + Pf6N2E2_575 0.51 -0.1
650,052 + Pf6N2E2_575 0.66 +0.3
650,052 + Pf6N2E2_575 0.66 -0.4
650,052 + Pf6N2E2_575 0.66 -0.4
650,053 - Pf6N2E2_575 0.66 -1.4
650,053 - Pf6N2E2_575 0.66 -0.7
650,053 - Pf6N2E2_575 0.66 +0.6
650,064 + Pf6N2E2_575 0.68 +0.6
650,169 + Pf6N2E2_575 0.80 -0.4
650,169 + Pf6N2E2_575 0.80 +0.6
650,169 + Pf6N2E2_575 0.80 -0.4
650,169 + Pf6N2E2_575 0.80 +0.2
650,169 + Pf6N2E2_575 0.80 +0.6
650,170 - Pf6N2E2_575 0.81 +0.5
650,170 - Pf6N2E2_575 0.81 -2.4
650,170 - Pf6N2E2_575 0.81 -1.4
650,366 + -0.4
650,366 + -0.4
650,366 + -0.4
650,367 - -0.4
650,367 - +0.6
650,369 + -0.4
650,369 + -0.4
650,836 + Pf6N2E2_576 0.38 +2.0
650,848 + Pf6N2E2_576 0.39 -0.4
650,848 + Pf6N2E2_576 0.39 -1.4
650,848 + Pf6N2E2_576 0.39 -2.4
650,848 + Pf6N2E2_576 0.39 -0.4
650,848 + Pf6N2E2_576 0.39 -1.0
651,157 + Pf6N2E2_576 0.72 -0.4
651,158 - Pf6N2E2_576 0.72 -0.4
651,308 + Pf6N2E2_576 0.87 -3.7
651,375 + -0.4
651,376 - +1.8
651,376 - +0.6
651,401 + +0.4
651,401 + -1.7
651,401 + -0.2
651,402 - +0.6
651,429 - -0.4
651,461 + -0.4
651,461 + +0.6
651,461 + -0.4
651,462 - +0.4
651,462 - -0.4
651,476 + -1.7
651,476 + -1.1
651,476 + -0.4
651,477 - -0.4
651,477 - -0.4
651,511 + -1.4
651,512 - +1.2
651,528 - +1.0
651,564 - -0.4
651,564 - -0.4
651,601 + -0.4
651,604 - -0.4
651,604 - -2.0
651,645 - +1.9
651,645 - +0.6
651,645 - -0.4
651,708 + +1.0
651,708 + +0.9
651,708 + +1.0
651,708 + -0.4
651,711 - +1.9
651,711 - -0.1
651,782 - -0.4
651,824 + +0.4
651,840 - +1.2
651,840 - +1.4
651,840 - -0.4
651,840 - +0.6
651,844 + -0.4
651,844 + -0.4
651,848 + +0.6
651,849 - -1.0
651,849 - +0.5
651,866 + -0.4
651,875 + +1.7
651,876 - +0.0
651,876 - -2.4
651,936 + +0.2
651,936 + +0.2
651,937 - -0.2
651,946 + +0.6
651,946 + +0.6
651,947 - +0.6
651,985 + -1.4
651,985 + -1.4
651,986 - -0.4
651,986 - -0.4
652,025 - -0.4
652,025 - +0.9
652,039 + +0.8
652,040 - -1.7
652,040 - +1.3
652,155 - +0.6
652,155 - +1.9
652,159 - +0.4
652,304 - Pf6N2E2_577 0.15 +0.3
652,304 - Pf6N2E2_577 0.15 -0.7
652,304 - Pf6N2E2_577 0.15 -0.6
652,368 + Pf6N2E2_577 0.19 -0.4
652,368 + Pf6N2E2_577 0.19 -0.1
652,369 - Pf6N2E2_577 0.19 -1.4

Or see this region's nucleotide sequence