Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4080

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4078 and Pf6N2E2_4079 are separated by 72 nucleotidesPf6N2E2_4079 and Pf6N2E2_4080 are separated by 101 nucleotidesPf6N2E2_4080 and Pf6N2E2_4081 are separated by 102 nucleotides Pf6N2E2_4078 - Aldose 1-epimerase, at 4,755,950 to 4,756,849 _4078 Pf6N2E2_4079 - lipoprotein, putative, at 4,756,922 to 4,757,446 _4079 Pf6N2E2_4080 - FIG00953722: hypothetical protein, at 4,757,548 to 4,757,793 _4080 Pf6N2E2_4081 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 4,757,896 to 4,758,981 _4081 Position (kb) 4757 4758Strain fitness (log2 ratio) -2 -1 0 1 2at 4756.592 kb on + strand, within Pf6N2E2_4078at 4756.592 kb on + strand, within Pf6N2E2_4078at 4756.592 kb on + strand, within Pf6N2E2_4078at 4756.592 kb on + strand, within Pf6N2E2_4078at 4756.592 kb on + strand, within Pf6N2E2_4078at 4756.592 kb on + strand, within Pf6N2E2_4078at 4756.593 kb on - strand, within Pf6N2E2_4078at 4756.593 kb on - strand, within Pf6N2E2_4078at 4756.593 kb on - strand, within Pf6N2E2_4078at 4756.593 kb on - strand, within Pf6N2E2_4078at 4756.593 kb on - strand, within Pf6N2E2_4078at 4756.593 kb on - strand, within Pf6N2E2_4078at 4756.752 kb on + strand, within Pf6N2E2_4078at 4756.752 kb on + strand, within Pf6N2E2_4078at 4756.752 kb on + strand, within Pf6N2E2_4078at 4756.752 kb on + strand, within Pf6N2E2_4078at 4756.752 kb on + strand, within Pf6N2E2_4078at 4756.752 kb on + strand, within Pf6N2E2_4078at 4756.752 kb on + strand, within Pf6N2E2_4078at 4756.752 kb on + strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.753 kb on - strand, within Pf6N2E2_4078at 4756.972 kb on - strandat 4756.972 kb on - strandat 4757.038 kb on + strand, within Pf6N2E2_4079at 4757.039 kb on - strand, within Pf6N2E2_4079at 4757.039 kb on - strand, within Pf6N2E2_4079at 4757.039 kb on - strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.040 kb on + strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.041 kb on - strand, within Pf6N2E2_4079at 4757.155 kb on + strand, within Pf6N2E2_4079at 4757.244 kb on + strand, within Pf6N2E2_4079at 4757.244 kb on + strand, within Pf6N2E2_4079at 4757.244 kb on + strand, within Pf6N2E2_4079at 4757.244 kb on + strand, within Pf6N2E2_4079at 4757.244 kb on + strand, within Pf6N2E2_4079at 4757.244 kb on + strand, within Pf6N2E2_4079at 4757.244 kb on + strand, within Pf6N2E2_4079at 4757.245 kb on - strand, within Pf6N2E2_4079at 4757.245 kb on - strand, within Pf6N2E2_4079at 4757.245 kb on - strand, within Pf6N2E2_4079at 4757.245 kb on - strand, within Pf6N2E2_4079at 4757.245 kb on - strand, within Pf6N2E2_4079at 4757.266 kb on + strand, within Pf6N2E2_4079at 4757.266 kb on + strand, within Pf6N2E2_4079at 4757.266 kb on + strand, within Pf6N2E2_4079at 4757.266 kb on + strand, within Pf6N2E2_4079at 4757.267 kb on - strand, within Pf6N2E2_4079at 4757.267 kb on - strand, within Pf6N2E2_4079at 4757.447 kb on + strandat 4757.447 kb on + strandat 4757.502 kb on + strandat 4757.503 kb on - strandat 4757.503 kb on - strandat 4757.536 kb on - strandat 4757.571 kb on - strandat 4757.571 kb on - strandat 4757.636 kb on + strand, within Pf6N2E2_4080at 4757.636 kb on + strand, within Pf6N2E2_4080at 4757.637 kb on - strand, within Pf6N2E2_4080at 4757.637 kb on - strand, within Pf6N2E2_4080at 4757.637 kb on - strand, within Pf6N2E2_4080at 4757.637 kb on - strand, within Pf6N2E2_4080at 4757.660 kb on + strand, within Pf6N2E2_4080at 4757.660 kb on + strand, within Pf6N2E2_4080at 4757.660 kb on + strand, within Pf6N2E2_4080at 4757.661 kb on - strand, within Pf6N2E2_4080at 4757.848 kb on + strandat 4757.848 kb on + strandat 4757.848 kb on + strandat 4757.849 kb on - strandat 4757.849 kb on - strandat 4757.849 kb on - strandat 4757.849 kb on - strandat 4757.897 kb on + strandat 4757.897 kb on + strandat 4757.897 kb on + strandat 4757.897 kb on + strandat 4757.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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4,756,592 + Pf6N2E2_4078 0.71 -1.0
4,756,592 + Pf6N2E2_4078 0.71 -0.8
4,756,592 + Pf6N2E2_4078 0.71 -0.6
4,756,592 + Pf6N2E2_4078 0.71 +0.3
4,756,592 + Pf6N2E2_4078 0.71 -0.3
4,756,592 + Pf6N2E2_4078 0.71 -1.0
4,756,593 - Pf6N2E2_4078 0.71 +0.1
4,756,593 - Pf6N2E2_4078 0.71 -0.6
4,756,593 - Pf6N2E2_4078 0.71 +0.5
4,756,593 - Pf6N2E2_4078 0.71 -0.8
4,756,593 - Pf6N2E2_4078 0.71 -0.3
4,756,593 - Pf6N2E2_4078 0.71 -0.1
4,756,752 + Pf6N2E2_4078 0.89 -0.6
4,756,752 + Pf6N2E2_4078 0.89 -2.2
4,756,752 + Pf6N2E2_4078 0.89 +0.6
4,756,752 + Pf6N2E2_4078 0.89 +0.8
4,756,752 + Pf6N2E2_4078 0.89 +0.2
4,756,752 + Pf6N2E2_4078 0.89 -0.4
4,756,752 + Pf6N2E2_4078 0.89 +0.2
4,756,752 + Pf6N2E2_4078 0.89 +1.2
4,756,753 - Pf6N2E2_4078 0.89 -0.0
4,756,753 - Pf6N2E2_4078 0.89 -0.6
4,756,753 - Pf6N2E2_4078 0.89 +0.5
4,756,753 - Pf6N2E2_4078 0.89 -0.5
4,756,753 - Pf6N2E2_4078 0.89 -0.6
4,756,753 - Pf6N2E2_4078 0.89 -0.2
4,756,753 - Pf6N2E2_4078 0.89 -0.5
4,756,753 - Pf6N2E2_4078 0.89 -1.1
4,756,753 - Pf6N2E2_4078 0.89 +0.8
4,756,753 - Pf6N2E2_4078 0.89 -0.2
4,756,753 - Pf6N2E2_4078 0.89 -0.4
4,756,972 - +0.6
4,756,972 - +0.1
4,757,038 + Pf6N2E2_4079 0.22 -0.7
4,757,039 - Pf6N2E2_4079 0.22 +0.6
4,757,039 - Pf6N2E2_4079 0.22 -0.1
4,757,039 - Pf6N2E2_4079 0.22 +1.0
4,757,040 + Pf6N2E2_4079 0.22 -0.0
4,757,040 + Pf6N2E2_4079 0.22 +0.6
4,757,040 + Pf6N2E2_4079 0.22 -1.0
4,757,040 + Pf6N2E2_4079 0.22 +1.9
4,757,040 + Pf6N2E2_4079 0.22 -0.4
4,757,040 + Pf6N2E2_4079 0.22 +0.6
4,757,040 + Pf6N2E2_4079 0.22 -0.1
4,757,040 + Pf6N2E2_4079 0.22 -0.0
4,757,040 + Pf6N2E2_4079 0.22 +0.4
4,757,040 + Pf6N2E2_4079 0.22 -0.2
4,757,040 + Pf6N2E2_4079 0.22 -0.4
4,757,040 + Pf6N2E2_4079 0.22 +0.6
4,757,040 + Pf6N2E2_4079 0.22 +0.3
4,757,040 + Pf6N2E2_4079 0.22 +0.4
4,757,040 + Pf6N2E2_4079 0.22 +1.4
4,757,040 + Pf6N2E2_4079 0.22 -1.0
4,757,040 + Pf6N2E2_4079 0.22 +0.4
4,757,040 + Pf6N2E2_4079 0.22 -1.0
4,757,040 + Pf6N2E2_4079 0.22 -0.0
4,757,040 + Pf6N2E2_4079 0.22 -0.4
4,757,040 + Pf6N2E2_4079 0.22 -0.2
4,757,040 + Pf6N2E2_4079 0.22 -0.4
4,757,040 + Pf6N2E2_4079 0.22 -0.4
4,757,040 + Pf6N2E2_4079 0.22 -0.2
4,757,040 + Pf6N2E2_4079 0.22 +0.3
4,757,040 + Pf6N2E2_4079 0.22 +0.7
4,757,040 + Pf6N2E2_4079 0.22 +0.9
4,757,040 + Pf6N2E2_4079 0.22 +1.6
4,757,041 - Pf6N2E2_4079 0.23 -0.0
4,757,041 - Pf6N2E2_4079 0.23 +1.6
4,757,041 - Pf6N2E2_4079 0.23 -1.2
4,757,041 - Pf6N2E2_4079 0.23 +0.2
4,757,041 - Pf6N2E2_4079 0.23 +0.3
4,757,041 - Pf6N2E2_4079 0.23 +0.1
4,757,041 - Pf6N2E2_4079 0.23 +1.2
4,757,041 - Pf6N2E2_4079 0.23 -0.1
4,757,041 - Pf6N2E2_4079 0.23 -1.4
4,757,041 - Pf6N2E2_4079 0.23 +0.2
4,757,041 - Pf6N2E2_4079 0.23 +0.6
4,757,155 + Pf6N2E2_4079 0.44 +0.6
4,757,244 + Pf6N2E2_4079 0.61 +1.3
4,757,244 + Pf6N2E2_4079 0.61 +0.2
4,757,244 + Pf6N2E2_4079 0.61 -0.4
4,757,244 + Pf6N2E2_4079 0.61 -0.6
4,757,244 + Pf6N2E2_4079 0.61 +0.6
4,757,244 + Pf6N2E2_4079 0.61 +0.5
4,757,244 + Pf6N2E2_4079 0.61 +0.2
4,757,245 - Pf6N2E2_4079 0.62 -0.1
4,757,245 - Pf6N2E2_4079 0.62 +0.1
4,757,245 - Pf6N2E2_4079 0.62 +0.6
4,757,245 - Pf6N2E2_4079 0.62 +0.9
4,757,245 - Pf6N2E2_4079 0.62 -0.1
4,757,266 + Pf6N2E2_4079 0.66 +1.6
4,757,266 + Pf6N2E2_4079 0.66 -0.4
4,757,266 + Pf6N2E2_4079 0.66 -0.4
4,757,266 + Pf6N2E2_4079 0.66 -0.0
4,757,267 - Pf6N2E2_4079 0.66 +1.1
4,757,267 - Pf6N2E2_4079 0.66 -0.7
4,757,447 + -1.2
4,757,447 + +2.0
4,757,502 + -0.1
4,757,503 - -0.3
4,757,503 - -1.4
4,757,536 - -1.2
4,757,571 - -1.0
4,757,571 - +0.6
4,757,636 + Pf6N2E2_4080 0.36 -1.6
4,757,636 + Pf6N2E2_4080 0.36 -1.6
4,757,637 - Pf6N2E2_4080 0.36 +1.6
4,757,637 - Pf6N2E2_4080 0.36 -0.4
4,757,637 - Pf6N2E2_4080 0.36 -1.0
4,757,637 - Pf6N2E2_4080 0.36 +0.6
4,757,660 + Pf6N2E2_4080 0.46 -0.4
4,757,660 + Pf6N2E2_4080 0.46 -0.9
4,757,660 + Pf6N2E2_4080 0.46 +1.2
4,757,661 - Pf6N2E2_4080 0.46 -1.4
4,757,848 + +0.3
4,757,848 + -0.8
4,757,848 + +0.9
4,757,849 - +0.6
4,757,849 - -0.1
4,757,849 - +0.3
4,757,849 - +2.2
4,757,897 + -1.0
4,757,897 + +0.6
4,757,897 + -0.9
4,757,897 + -1.4
4,757,898 - +0.3

Or see this region's nucleotide sequence