Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27380

Experiment: malate (C) and Ammonium chloride (N); with MOPS; with PEG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with MOPS; with PEG
6,088,536	+				-1.0
6,088,699	+		PFLU_RS27375	0.28	-0.4
6,088,700	-		PFLU_RS27375	0.28	-1.2
6,088,793	+		PFLU_RS27375	0.43	-2.0
6,088,793	+		PFLU_RS27375	0.43	-0.2
6,088,793	+		PFLU_RS27375	0.43	-0.1
6,088,793	+		PFLU_RS27375	0.43	-1.9
6,088,793	+		PFLU_RS27375	0.43	-0.6
6,088,793	+		PFLU_RS27375	0.43	-0.5
6,088,793	+		PFLU_RS27375	0.43	+0.8
6,088,793	+		PFLU_RS27375	0.43	-0.2
6,088,793	+		PFLU_RS27375	0.43	-0.7
6,088,794	-		PFLU_RS27375	0.44	+0.1
6,088,794	-		PFLU_RS27375	0.44	+0.0
6,088,794	-		PFLU_RS27375	0.44	+0.8
6,088,794	-		PFLU_RS27375	0.44	+0.6
6,088,895	+		PFLU_RS27375	0.61	-0.2
6,088,895	+		PFLU_RS27375	0.61	+1.2
6,088,895	+		PFLU_RS27375	0.61	+1.1
6,088,895	+		PFLU_RS27375	0.61	-1.0
6,088,895	+		PFLU_RS27375	0.61	-1.1
6,088,895	+		PFLU_RS27375	0.61	+0.4
6,088,896	-		PFLU_RS27375	0.61	+0.4
6,088,896	-		PFLU_RS27375	0.61	-1.9
6,088,896	-		PFLU_RS27375	0.61	-0.7
6,088,896	-		PFLU_RS27375	0.61	-0.3
6,088,896	-		PFLU_RS27375	0.61	-0.2
6,088,926	+		PFLU_RS27375	0.66	-0.3
6,088,926	+		PFLU_RS27375	0.66	-1.1
6,088,927	-		PFLU_RS27375	0.66	+0.5
6,089,077	-				+0.8
6,089,077	-				-0.6
6,089,077	-				+0.5
6,089,077	-				+1.0
6,089,077	-				-0.6
6,089,091	+				-1.0
6,089,091	+				-1.7
6,089,091	+				-0.4
6,089,091	+				-1.4
6,089,091	+				+0.2
6,089,091	+				-1.5
6,089,091	+				-0.8
6,089,091	+				+0.8
6,089,091	+				-1.6
6,089,091	+				-2.4
6,089,091	+				-0.6
6,089,091	+				-0.6
6,089,091	+				-0.8
6,089,091	+				-2.6
6,089,091	+				-1.9
6,089,091	+				-2.4
6,089,091	+				-2.3
6,089,092	-				+0.2
6,089,092	-				+0.8
6,089,092	-				-0.6
6,089,092	-				+0.0
6,089,092	-				-0.2
6,089,092	-				+1.3
6,089,092	-				-0.2
6,089,092	-				-0.8
6,089,092	-				-0.2
6,089,092	-				-1.6
6,089,092	-				-1.6
6,089,092	-				-0.4
6,089,095	+				-1.7
6,089,095	+				-1.9
6,089,096	-				-0.6
6,089,096	-				+0.4
6,089,106	+				-2.8
6,089,106	+				+1.0
6,089,106	+				-0.3
6,089,106	+				+0.0
6,089,106	+				-0.3
6,089,106	+				+0.5
6,089,106	+				-1.7
6,089,106	+				-1.3
6,089,106	+				-1.8
6,089,106	+				+1.8
6,089,106	+				-0.6
6,089,107	-				-0.2
6,089,107	-				-1.2
6,089,107	-				-0.5
6,089,107	-				-0.2
6,089,107	-				-0.3
6,089,110	+				-2.3
6,089,110	+				-1.2
6,089,111	-				-0.8
6,089,111	-				+0.2
6,089,111	-				+0.2
6,089,111	-				-1.0
6,089,111	-				-0.7
6,089,111	-				+1.1
6,089,111	-				-1.5
6,089,111	-				+0.4
6,089,111	-				-1.9
6,089,111	-				+0.4
6,089,335	+		PFLU_RS27380	0.13	+0.2
6,089,336	-		PFLU_RS27380	0.13	-1.3
6,089,521	+		PFLU_RS27380	0.26	+0.2
6,089,521	+		PFLU_RS27380	0.26	+0.2
6,089,521	+		PFLU_RS27380	0.26	-0.1
6,089,522	-		PFLU_RS27380	0.26	-0.8
6,089,522	-		PFLU_RS27380	0.26	-0.1
6,089,588	+		PFLU_RS27380	0.30	+0.4
6,089,588	+		PFLU_RS27380	0.30	-1.1
6,089,589	-		PFLU_RS27380	0.30	+1.0
6,089,696	+		PFLU_RS27380	0.38	-3.4
6,089,794	+		PFLU_RS27380	0.44	+0.2
6,089,794	+		PFLU_RS27380	0.44	-0.6
6,089,794	+		PFLU_RS27380	0.44	-2.3
6,089,794	+		PFLU_RS27380	0.44	-1.8
6,089,794	+		PFLU_RS27380	0.44	-2.7
6,089,794	+		PFLU_RS27380	0.44	-0.0
6,089,794	+		PFLU_RS27380	0.44	+0.5
6,089,794	+		PFLU_RS27380	0.44	-1.5
6,089,794	+		PFLU_RS27380	0.44	+1.2
6,089,794	+		PFLU_RS27380	0.44	-0.1
6,089,794	+		PFLU_RS27380	0.44	-1.6
6,089,794	+		PFLU_RS27380	0.44	-1.4
6,089,794	+		PFLU_RS27380	0.44	-2.0
6,089,794	+		PFLU_RS27380	0.44	-2.7
6,089,794	+		PFLU_RS27380	0.44	-1.4
6,089,794	+		PFLU_RS27380	0.44	-1.2
6,089,794	+		PFLU_RS27380	0.44	-3.6
6,089,794	+		PFLU_RS27380	0.44	-1.0
6,089,794	+		PFLU_RS27380	0.44	-1.4
6,089,794	+		PFLU_RS27380	0.44	-0.4
6,089,794	+		PFLU_RS27380	0.44	-2.0
6,089,794	+		PFLU_RS27380	0.44	-0.3
6,089,794	+		PFLU_RS27380	0.44	-2.8
6,089,795	-		PFLU_RS27380	0.44	-0.4
6,089,795	-		PFLU_RS27380	0.44	-0.6
6,089,795	-		PFLU_RS27380	0.44	-1.4
6,089,795	-		PFLU_RS27380	0.44	-0.9
6,089,795	-		PFLU_RS27380	0.44	+0.8
6,089,795	-		PFLU_RS27380	0.44	-0.6
6,089,795	-		PFLU_RS27380	0.44	+0.3
6,089,795	-		PFLU_RS27380	0.44	+0.3
6,089,795	-		PFLU_RS27380	0.44	-1.1
6,089,795	-		PFLU_RS27380	0.44	-1.2
6,089,795	-		PFLU_RS27380	0.44	-2.7
6,089,795	-		PFLU_RS27380	0.44	+0.0
6,089,795	-		PFLU_RS27380	0.44	-0.4
6,089,795	-		PFLU_RS27380	0.44	-0.4
6,089,795	-		PFLU_RS27380	0.44	+0.2
6,089,795	-		PFLU_RS27380	0.44	-0.2
6,089,800	+		PFLU_RS27380	0.45	+0.8
6,089,800	+		PFLU_RS27380	0.45	-3.0
6,089,800	+		PFLU_RS27380	0.45	-0.6
6,089,800	+		PFLU_RS27380	0.45	-1.3
6,089,800	+		PFLU_RS27380	0.45	-2.2
6,089,800	+		PFLU_RS27380	0.45	-1.4
6,089,800	+		PFLU_RS27380	0.45	-1.1
6,089,800	+		PFLU_RS27380	0.45	+0.3
6,089,800	+		PFLU_RS27380	0.45	-1.2
6,089,800	+		PFLU_RS27380	0.45	-3.0
6,089,800	+		PFLU_RS27380	0.45	-1.9
6,089,800	+		PFLU_RS27380	0.45	-0.7
6,089,800	+		PFLU_RS27380	0.45	-2.3
6,089,800	+		PFLU_RS27380	0.45	-3.1
6,089,800	+		PFLU_RS27380	0.45	-1.2
6,089,800	+		PFLU_RS27380	0.45	-3.0
6,089,800	+		PFLU_RS27380	0.45	-1.0
6,089,800	+		PFLU_RS27380	0.45	-0.7
6,089,801	-		PFLU_RS27380	0.45	+0.8
6,089,801	-		PFLU_RS27380	0.45	-0.7
6,089,801	-		PFLU_RS27380	0.45	+0.0
6,089,801	-		PFLU_RS27380	0.45	+0.3
6,089,801	-		PFLU_RS27380	0.45	-1.6
6,089,801	-		PFLU_RS27380	0.45	-0.2
6,089,801	-		PFLU_RS27380	0.45	-0.9
6,089,801	-		PFLU_RS27380	0.45	-1.0
6,089,801	-		PFLU_RS27380	0.45	+0.0
6,089,801	-		PFLU_RS27380	0.45	-1.2
6,089,801	-		PFLU_RS27380	0.45	-0.6
6,089,801	-		PFLU_RS27380	0.45	+0.2
6,089,801	-		PFLU_RS27380	0.45	-0.5
6,089,801	-		PFLU_RS27380	0.45	-0.5
6,089,801	-		PFLU_RS27380	0.45	-1.2
6,089,833	+		PFLU_RS27380	0.47	-1.6
6,089,833	+		PFLU_RS27380	0.47	-0.6
6,089,834	-		PFLU_RS27380	0.47	+0.0
6,089,834	-		PFLU_RS27380	0.47	-1.2
6,089,914	+		PFLU_RS27380	0.52	-0.8
6,089,914	+		PFLU_RS27380	0.52	-1.8
6,089,914	+		PFLU_RS27380	0.52	-1.4
6,089,914	+		PFLU_RS27380	0.52	-3.6
6,089,914	+		PFLU_RS27380	0.52	-2.8
6,089,914	+		PFLU_RS27380	0.52	-2.0
6,089,914	+		PFLU_RS27380	0.52	-2.3
6,089,914	+		PFLU_RS27380	0.52	-1.5
6,089,914	+		PFLU_RS27380	0.52	-1.8
6,089,914	+		PFLU_RS27380	0.52	-1.5
6,089,914	+		PFLU_RS27380	0.52	-2.3
6,089,915	-		PFLU_RS27380	0.52	-1.0
6,089,915	-		PFLU_RS27380	0.52	+1.4
6,089,915	-		PFLU_RS27380	0.52	-0.6
6,089,915	-		PFLU_RS27380	0.52	-0.5
6,089,915	-		PFLU_RS27380	0.52	-0.8
6,089,915	-		PFLU_RS27380	0.52	-1.6
6,089,915	-		PFLU_RS27380	0.52	-1.8
6,089,915	-		PFLU_RS27380	0.52	+0.6
6,089,915	-		PFLU_RS27380	0.52	-0.6
6,089,915	-		PFLU_RS27380	0.52	-0.2
6,089,915	-		PFLU_RS27380	0.52	-1.6
6,089,915	-		PFLU_RS27380	0.52	+0.4
6,089,915	-		PFLU_RS27380	0.52	+0.8
6,089,915	-		PFLU_RS27380	0.52	-1.5
6,089,944	+		PFLU_RS27380	0.54	+0.5
6,089,944	+		PFLU_RS27380	0.54	-3.2
6,089,944	+		PFLU_RS27380	0.54	-0.9
6,089,944	+		PFLU_RS27380	0.54	-2.3
6,089,945	-		PFLU_RS27380	0.54	-0.5
6,089,945	-		PFLU_RS27380	0.54	-0.6
6,089,945	-		PFLU_RS27380	0.54	-0.9
6,089,945	-		PFLU_RS27380	0.54	+1.8
6,089,957	+		PFLU_RS27380	0.55	-2.8
6,089,957	+		PFLU_RS27380	0.55	-3.8
6,090,232	+		PFLU_RS27380	0.74	-3.1
6,090,233	-		PFLU_RS27380	0.74	-0.3
6,090,233	-		PFLU_RS27380	0.74	-2.0
6,090,233	-		PFLU_RS27380	0.74	-2.0
6,090,256	+		PFLU_RS27380	0.75	-1.8
6,090,256	+		PFLU_RS27380	0.75	-0.9
6,090,256	+		PFLU_RS27380	0.75	-3.0
6,090,256	+		PFLU_RS27380	0.75	-3.2
6,090,256	+		PFLU_RS27380	0.75	-2.0
6,090,257	-		PFLU_RS27380	0.75	-0.8
6,090,257	-		PFLU_RS27380	0.75	-0.2
6,090,257	-		PFLU_RS27380	0.75	-1.3
6,090,310	+		PFLU_RS27380	0.79	-2.1
6,090,310	+		PFLU_RS27380	0.79	-3.0
6,090,311	-		PFLU_RS27380	0.79	-1.7
6,090,311	-		PFLU_RS27380	0.79	+0.4
6,090,386	+		PFLU_RS27380	0.84	-3.4
6,090,386	+		PFLU_RS27380	0.84	-1.5
6,090,387	-		PFLU_RS27380	0.84	-0.9
6,090,387	-		PFLU_RS27380	0.84	-1.0
6,090,408	+		PFLU_RS27380	0.86	+0.1
6,090,408	+		PFLU_RS27380	0.86	-1.3
6,090,408	+		PFLU_RS27380	0.86	+0.5
6,090,409	-		PFLU_RS27380	0.86	+1.2
6,090,409	-		PFLU_RS27380	0.86	-1.0
6,090,409	-		PFLU_RS27380	0.86	+1.4
6,090,409	-		PFLU_RS27380	0.86	-0.8
6,090,490	+				-1.9
6,090,491	-				-0.2
6,090,491	-				-0.2
6,090,520	+				-1.1
6,090,520	+				-2.3
6,090,520	+				-0.2
6,090,520	+				-1.9
6,090,521	-				+0.6
6,090,521	-				-1.2
6,090,521	-				-0.3
6,090,521	-				+0.2
6,090,572	+				-1.4
6,090,573	-				-1.5
6,090,573	-				+0.0
6,090,578	+				-2.3
6,090,579	-				-1.8
6,090,579	-				-2.0
6,090,579	-				-1.3
6,090,580	+				-3.0
6,090,580	+				-2.3
6,090,580	+				-2.8
6,090,581	-				-1.2
6,090,623	+				-0.2
6,090,623	+				-1.7
6,090,623	+				-1.6
6,090,623	+				-1.7
6,090,623	+				-1.8
6,090,623	+				-0.7
6,090,623	+				-0.3
6,090,623	+				-1.7
6,090,624	-				-2.8
6,090,624	-				-0.1
6,090,624	-				-0.5
6,090,624	-				-0.1
6,090,624	-				-2.2
6,090,624	-				+1.6
6,090,624	-				-0.4
6,090,624	-				-0.1
6,090,645	+				+0.1
6,090,645	+				+0.0
6,090,645	+				+0.9
6,090,645	+				-0.6
6,090,645	+				-0.5
6,090,646	-				+0.0
6,090,646	-				+0.2
6,090,646	-				+1.3
6,090,646	-				-0.2
6,090,646	-				+1.8
6,090,646	-				-1.4
6,090,657	-				+0.3
6,090,657	-				+0.1
6,090,657	-				+1.0
6,090,726	+				+0.0
6,090,726	+				+0.9
6,090,726	+				-0.1
6,090,802	+		PFLU_RS27385	0.14	+0.6
6,090,802	+		PFLU_RS27385	0.14	+0.6
6,090,802	+		PFLU_RS27385	0.14	-0.7
6,090,802	+		PFLU_RS27385	0.14	+0.2
6,090,802	+		PFLU_RS27385	0.14	-0.2
6,090,802	+		PFLU_RS27385	0.14	-1.2
6,090,802	+		PFLU_RS27385	0.14	-0.1
6,090,802	+		PFLU_RS27385	0.14	-0.3
6,090,802	-		PFLU_RS27385	0.14	+0.5
6,090,803	-		PFLU_RS27385	0.14	-0.4
6,090,803	-		PFLU_RS27385	0.14	+0.2
6,090,803	-		PFLU_RS27385	0.14	+0.2
6,090,803	-		PFLU_RS27385	0.14	-0.6
6,090,803	-		PFLU_RS27385	0.14	+0.5
6,090,836	-		PFLU_RS27385	0.18	-0.1
6,090,897	+		PFLU_RS27385	0.25	+0.2
6,090,897	+		PFLU_RS27385	0.25	+1.2
6,090,897	+		PFLU_RS27385	0.25	+0.0
6,090,898	-		PFLU_RS27385	0.25	-0.3
6,090,898	-		PFLU_RS27385	0.25	+0.3
6,090,898	-		PFLU_RS27385	0.25	-0.6
6,090,898	-		PFLU_RS27385	0.25	+1.0
6,090,899	+		PFLU_RS27385	0.25	+0.4
6,090,900	-		PFLU_RS27385	0.26	-1.6
6,090,900	-		PFLU_RS27385	0.26	+1.8
6,090,900	-		PFLU_RS27385	0.26	-0.3
6,090,905	+		PFLU_RS27385	0.26	-0.7
6,090,905	+		PFLU_RS27385	0.26	-0.7
6,090,906	-		PFLU_RS27385	0.26	+0.2
6,090,906	-		PFLU_RS27385	0.26	+1.0
6,090,917	-		PFLU_RS27385	0.28	-0.1
6,090,917	-		PFLU_RS27385	0.28	+0.3
6,090,917	-		PFLU_RS27385	0.28	+0.4
6,090,917	-		PFLU_RS27385	0.28	-0.6
6,090,996	+		PFLU_RS27385	0.37	+0.2
6,090,996	+		PFLU_RS27385	0.37	-0.7
6,090,997	-		PFLU_RS27385	0.37	+1.2
6,091,082	+		PFLU_RS27385	0.48	+1.8
6,091,082	+		PFLU_RS27385	0.48	+0.3
6,091,082	+		PFLU_RS27385	0.48	+1.8
6,091,082	+		PFLU_RS27385	0.48	+0.4
6,091,443	+				+0.6
6,091,443	+				+1.5
6,091,444	-				+0.3
6,091,444	-				-1.3