Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24720

Experiment: malate (C) and Ammonium chloride (N); with MOPS; with PEG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with MOPS; with PEG
5,538,590	+		PFLU_RS24715	0.48	-0.9
5,538,590	+		PFLU_RS24715	0.48	-1.9
5,538,590	+		PFLU_RS24715	0.48	+0.1
5,538,590	+		PFLU_RS24715	0.48	+1.0
5,538,590	+		PFLU_RS24715	0.48	-0.1
5,538,590	+		PFLU_RS24715	0.48	-0.8
5,538,590	+		PFLU_RS24715	0.48	-1.5
5,538,590	+		PFLU_RS24715	0.48	+0.5
5,538,590	+		PFLU_RS24715	0.48	-0.9
5,538,590	+		PFLU_RS24715	0.48	+0.4
5,538,590	+		PFLU_RS24715	0.48	+1.0
5,538,590	+		PFLU_RS24715	0.48	+0.2
5,538,590	+		PFLU_RS24715	0.48	-1.0
5,538,590	+		PFLU_RS24715	0.48	-0.7
5,538,590	+		PFLU_RS24715	0.48	-0.7
5,538,590	+		PFLU_RS24715	0.48	+0.3
5,538,590	+		PFLU_RS24715	0.48	+0.1
5,538,590	+		PFLU_RS24715	0.48	+2.4
5,538,590	+		PFLU_RS24715	0.48	+0.8
5,538,590	+		PFLU_RS24715	0.48	+0.3
5,538,591	-		PFLU_RS24715	0.48	+0.0
5,538,591	-		PFLU_RS24715	0.48	+0.5
5,538,591	-		PFLU_RS24715	0.48	-0.4
5,538,591	-		PFLU_RS24715	0.48	-0.2
5,538,591	-		PFLU_RS24715	0.48	+1.1
5,538,591	-		PFLU_RS24715	0.48	+0.4
5,538,591	-		PFLU_RS24715	0.48	+0.3
5,538,591	-		PFLU_RS24715	0.48	+0.3
5,538,591	-		PFLU_RS24715	0.48	-2.1
5,538,591	-		PFLU_RS24715	0.48	-0.0
5,538,591	-		PFLU_RS24715	0.48	+1.1
5,538,626	+		PFLU_RS24715	0.51	-0.2
5,538,627	-		PFLU_RS24715	0.51	+0.1
5,538,627	-		PFLU_RS24715	0.51	-0.1
5,538,660	+		PFLU_RS24715	0.53	-0.4
5,538,668	+		PFLU_RS24715	0.54	-0.8
5,538,668	+		PFLU_RS24715	0.54	+0.8
5,538,668	+		PFLU_RS24715	0.54	-0.0
5,538,668	+		PFLU_RS24715	0.54	-0.3
5,538,669	-		PFLU_RS24715	0.54	-1.0
5,538,669	-		PFLU_RS24715	0.54	+0.2
5,538,669	-		PFLU_RS24715	0.54	+0.5
5,538,710	+		PFLU_RS24715	0.57	-0.7
5,538,710	+		PFLU_RS24715	0.57	-0.7
5,538,711	-		PFLU_RS24715	0.57	+0.0
5,538,711	-		PFLU_RS24715	0.57	-0.5
5,538,711	-		PFLU_RS24715	0.57	+0.0
5,538,939	+		PFLU_RS24715	0.72	-0.3
5,538,940	-		PFLU_RS24715	0.73	+1.0
5,539,109	+		PFLU_RS24715	0.84	-0.4
5,539,110	-		PFLU_RS24715	0.84	-0.3
5,539,322	+				-0.8
5,539,323	-				-0.2
5,539,323	-				-0.3
5,539,323	-				-0.9
5,539,323	-				-0.1
5,539,323	-				-0.4
5,539,360	+				-1.6
5,539,401	+				-0.6
5,539,402	-				-0.2
5,539,402	-				-1.4
5,539,412	-				-1.1
5,539,412	-				-1.4
5,539,412	-				+0.9
5,539,412	-				+0.0
5,539,419	-				+0.3
5,539,437	+				-0.9
5,539,438	-				-1.3
5,539,456	-				-0.8
5,539,492	-				-1.3
5,539,506	-				-2.3
5,539,584	+				-1.1
5,539,584	+				-1.6
5,539,584	+				-0.1
5,539,584	+				+0.4
5,539,584	+				-2.0
5,539,584	+				-1.9
5,539,584	+				-1.2
5,539,584	+				+0.2
5,539,584	+				-1.8
5,539,584	+				-1.0
5,539,585	-				-0.2
5,539,585	-				+0.4
5,539,585	-				-0.4
5,539,585	-				-0.9
5,539,585	-				-0.9
5,539,596	+				-0.1
5,539,596	+				-0.7
5,539,596	+				-2.3
5,539,596	+				+1.5
5,539,596	+				-0.0
5,539,596	+				-1.6
5,539,596	+				-0.8
5,539,597	-				+0.1
5,539,597	-				-0.8
5,539,597	-				-1.4
5,539,597	-				-1.5
5,539,597	-				-2.7
5,539,680	+		PFLU_RS24720	0.15	-2.0
5,539,680	+		PFLU_RS24720	0.15	-0.2
5,539,680	+		PFLU_RS24720	0.15	+0.1
5,539,680	+		PFLU_RS24720	0.15	-1.0
5,539,680	+		PFLU_RS24720	0.15	-2.0
5,539,680	+		PFLU_RS24720	0.15	-1.1
5,539,680	+		PFLU_RS24720	0.15	-3.3
5,539,680	+		PFLU_RS24720	0.15	-1.9
5,539,680	+		PFLU_RS24720	0.15	-1.3
5,539,681	-		PFLU_RS24720	0.15	-2.7
5,539,681	-		PFLU_RS24720	0.15	-0.3
5,539,681	-		PFLU_RS24720	0.15	-1.3
5,539,681	-		PFLU_RS24720	0.15	-2.3
5,539,681	-		PFLU_RS24720	0.15	+0.0
5,539,681	-		PFLU_RS24720	0.15	-1.7
5,539,681	-		PFLU_RS24720	0.15	+0.0
5,539,852	+		PFLU_RS24720	0.39	-0.8
5,539,852	+		PFLU_RS24720	0.39	-1.2
5,539,852	+		PFLU_RS24720	0.39	-1.3
5,539,852	+		PFLU_RS24720	0.39	-0.1
5,539,852	+		PFLU_RS24720	0.39	+0.0
5,539,852	+		PFLU_RS24720	0.39	-1.4
5,539,852	+		PFLU_RS24720	0.39	-1.4
5,539,852	+		PFLU_RS24720	0.39	-0.7
5,539,852	+		PFLU_RS24720	0.39	-1.1
5,539,852	+		PFLU_RS24720	0.39	-1.0
5,539,852	+		PFLU_RS24720	0.39	+0.1
5,539,853	-		PFLU_RS24720	0.39	-1.7
5,539,853	-		PFLU_RS24720	0.39	-1.3
5,539,853	-		PFLU_RS24720	0.39	-0.0
5,539,853	-		PFLU_RS24720	0.39	-1.3
5,539,853	-		PFLU_RS24720	0.39	+0.8
5,539,853	-		PFLU_RS24720	0.39	+0.6
5,540,052	+		PFLU_RS24720	0.68	+0.7
5,540,053	-		PFLU_RS24720	0.68	-0.3
5,540,053	-		PFLU_RS24720	0.68	-1.5
5,540,053	-		PFLU_RS24720	0.68	-2.7
5,540,092	-		PFLU_RS24720	0.73	-0.2
5,540,092	-		PFLU_RS24720	0.73	-1.2
5,540,092	-		PFLU_RS24720	0.73	-0.3
5,540,220	+				-1.2
5,540,220	+				+0.0
5,540,221	-				-1.1
5,540,237	+				-0.4
5,540,237	+				-0.1
5,540,237	+				-2.1
5,540,237	+				-1.2
5,540,237	+				-0.0
5,540,237	+				-1.2
5,540,237	+				-0.5
5,540,237	+				-1.2
5,540,237	+				-1.4
5,540,237	+				-1.7
5,540,238	-				-1.4
5,540,238	-				-2.2
5,540,238	-				-1.1
5,540,238	-				-0.6
5,540,238	-				-1.6
5,540,246	+				-1.7
5,540,246	+				-1.9
5,540,247	-				-2.1
5,540,254	-				-0.5
5,540,283	+				-1.8
5,540,283	+				-0.5
5,540,283	+				+2.6
5,540,283	+				+0.4
5,540,283	+				-0.1
5,540,283	+				+0.1
5,540,283	+				+0.1
5,540,283	+				+0.9
5,540,283	+				-0.3
5,540,283	+				-0.8
5,540,284	-				+0.4
5,540,284	-				+2.5
5,540,284	-				+0.6
5,540,284	-				-0.5
5,540,284	-				-0.4
5,540,284	-				-0.2
5,540,284	-				-0.7
5,540,356	+				-0.7
5,540,356	+				+0.8
5,540,390	+				-1.2
5,540,390	+				+0.2
5,540,390	+				-0.4
5,540,391	-				+0.7
5,540,391	-				+0.5
5,540,392	+				+0.5
5,540,392	+				+1.0
5,540,392	+				-0.2
5,540,392	+				+0.0
5,540,392	+				+0.2
5,540,392	+				-0.3
5,540,392	+				+1.0
5,540,392	+				-1.8
5,540,392	+				-1.0
5,540,392	+				+0.1
5,540,392	+				+0.6
5,540,392	+				+0.2
5,540,392	+				-0.2
5,540,392	+				+0.4
5,540,393	-				-0.4
5,540,393	-				+0.8
5,540,393	-				+1.1
5,540,393	-				-0.0
5,540,393	-				+0.4
5,540,393	-				+0.4
5,540,393	-				+0.0
5,540,393	-				+0.5
5,540,393	-				-0.9
5,540,393	-				+0.4
5,540,393	-				+0.9
5,540,393	-				+0.8
5,540,412	-				-1.5
5,540,468	-		PFLU_RS31065	0.24	+0.1
5,540,483	+		PFLU_RS31065	0.30	-0.1
5,540,620	-		PFLU_RS31065	0.85	+0.9
5,540,628	+		PFLU_RS31065	0.89	+1.1
5,540,644	+				-0.8
5,540,645	-				+1.0
5,540,672	+				-1.0
5,540,672	+				+1.1
5,540,673	-				-1.5
5,540,673	-				+0.3
5,540,673	-				+0.3
5,540,673	-				-0.8
5,540,685	+				-0.1
5,540,685	+				-0.5
5,540,686	-				+2.2
5,540,686	-				+1.0
5,540,686	-				+0.3
5,540,689	+				-0.9
5,540,689	+				-0.3
5,540,689	+				-0.4
5,540,689	+				+0.3
5,540,689	+				+0.9
5,540,689	+				-0.4
5,540,689	+				-0.5
5,540,689	+				+1.5
5,540,690	-				-0.0
5,540,690	-				+1.2
5,540,690	-				+1.2
5,540,702	-				+1.2
5,540,702	-				-0.3
5,540,710	+				-1.4
5,540,710	+				+0.1
5,540,711	-				-0.5
5,540,712	+				-1.3
5,540,733	+				+0.3
5,540,733	+				-1.4
5,540,734	-				+2.0
5,540,734	-				-0.4
5,540,734	-				+0.1
5,540,734	-				-1.4
5,540,740	+				-1.2
5,540,740	+				-0.2
5,540,740	+				+1.9
5,540,740	+				+0.4
5,540,741	-				-1.1
5,540,747	+				+0.2
5,540,747	+				+0.1
5,540,748	-				+0.4
5,540,768	+				-0.6
5,540,768	+				+0.8
5,540,768	+				+0.8
5,540,768	+				+1.0
5,540,768	+				-1.3
5,540,768	+				+2.6
5,540,768	+				+0.4
5,540,768	+				+0.5
5,540,768	+				+0.4
5,540,768	+				+0.4
5,540,768	+				+0.9
5,540,769	-				-0.0
5,540,769	-				+0.0
5,540,769	-				-1.2
5,540,769	-				+0.5
5,540,769	-				-0.4
5,540,769	-				-0.3
5,540,769	-				+0.3
5,540,769	-				-0.8
5,540,769	-				+0.1
5,540,769	-				-0.2
5,540,769	-				+1.5
5,540,769	-				+0.9
5,540,769	-				+0.1
5,540,769	-				-0.4
5,540,778	-				+0.8
5,540,778	-				-0.9
5,540,814	-				-0.5
5,540,831	+				-1.5