Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18410

Experiment: malate (C) and Ammonium chloride (N); with MOPS; with PEG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with MOPS; with PEG
4,171,528	+				+0.4
4,171,528	+				+1.8
4,171,528	+				-0.0
4,171,528	+				+0.8
4,171,529	-				-0.0
4,171,529	-				-1.0
4,171,529	-				+0.1
4,171,529	-				-1.5
4,171,529	-				-0.5
4,171,529	-				-0.3
4,171,529	-				+0.4
4,171,529	-				+1.5
4,171,541	+				-0.2
4,171,541	+				-0.3
4,171,541	+				-0.1
4,171,541	+				-0.1
4,171,541	+				-0.5
4,171,541	+				+0.8
4,171,541	+				-0.1
4,171,541	+				+0.5
4,171,542	-				+0.4
4,171,542	-				+0.3
4,171,542	-				-1.1
4,171,542	-				-0.3
4,171,542	-				+0.2
4,171,572	-				-0.0
4,171,585	+				+0.2
4,171,585	+				+0.6
4,171,585	+				-1.1
4,171,596	+				-1.0
4,171,596	+				+0.8
4,171,596	+				-0.7
4,171,596	+				+0.5
4,171,596	+				+0.5
4,171,596	+				+0.6
4,171,596	+				-1.8
4,171,596	+				-1.2
4,171,597	-				-0.9
4,171,597	-				+0.5
4,171,597	-				-0.7
4,171,597	-				-0.7
4,171,597	-				+0.1
4,171,597	-				+0.6
4,171,597	-				+0.9
4,171,597	-				-0.2
4,171,597	-				+1.1
4,171,597	-				-0.1
4,171,597	-				+0.6
4,171,636	+		PFLU_RS18405	0.12	+0.6
4,171,636	+		PFLU_RS18405	0.12	+0.7
4,171,636	+		PFLU_RS18405	0.12	-1.9
4,171,793	+		PFLU_RS18405	0.43	-0.4
4,171,793	+		PFLU_RS18405	0.43	-0.1
4,171,793	+		PFLU_RS18405	0.43	-0.8
4,171,794	-		PFLU_RS18405	0.43	+1.5
4,171,794	-		PFLU_RS18405	0.43	+1.8
4,171,794	-		PFLU_RS18405	0.43	-0.4
4,171,836	-		PFLU_RS18405	0.51	-0.4
4,171,854	-		PFLU_RS18405	0.55	-0.1
4,171,863	+		PFLU_RS18405	0.56	+0.2
4,171,863	+		PFLU_RS18405	0.56	-0.2
4,171,863	+		PFLU_RS18405	0.56	+0.0
4,171,863	+		PFLU_RS18405	0.56	-0.5
4,171,863	+		PFLU_RS18405	0.56	+0.8
4,171,863	+		PFLU_RS18405	0.56	+1.1
4,171,864	-		PFLU_RS18405	0.57	+0.4
4,171,864	-		PFLU_RS18405	0.57	-0.8
4,171,864	-		PFLU_RS18405	0.57	-0.9
4,171,864	-		PFLU_RS18405	0.57	-0.7
4,171,864	-		PFLU_RS18405	0.57	-1.1
4,171,864	-		PFLU_RS18405	0.57	-1.9
4,171,864	-		PFLU_RS18405	0.57	-0.1
4,171,864	-		PFLU_RS18405	0.57	+0.5
4,171,864	-		PFLU_RS18405	0.57	-0.9
4,171,864	-		PFLU_RS18405	0.57	+0.1
4,171,864	-		PFLU_RS18405	0.57	-0.9
4,171,954	+		PFLU_RS18405	0.74	+1.8
4,171,954	+		PFLU_RS18405	0.74	+0.8
4,171,955	-		PFLU_RS18405	0.74	+0.1
4,172,013	+		PFLU_RS18405	0.85	+1.0
4,172,014	-		PFLU_RS18405	0.86	-0.5
4,172,031	+		PFLU_RS18405	0.89	+0.1
4,172,032	-		PFLU_RS18405	0.89	-0.8
4,172,086	-				-0.8
4,172,173	-		PFLU_RS30910	0.33	+0.4
4,172,221	+		PFLU_RS30910	0.61	-1.2
4,172,245	+		PFLU_RS30910	0.75	-0.0
4,172,245	+		PFLU_RS30910	0.75	+0.9
4,172,246	-		PFLU_RS30910	0.75	-0.8
4,172,246	-		PFLU_RS30910	0.75	+1.0
4,172,247	+		PFLU_RS30910	0.76	-0.4
4,172,247	+		PFLU_RS30910	0.76	-0.8
4,172,247	+		PFLU_RS30910	0.76	-0.2
4,172,247	+		PFLU_RS30910	0.76	+1.0
4,172,247	+		PFLU_RS30910	0.76	+0.8
4,172,247	+		PFLU_RS30910	0.76	-0.1
4,172,247	+		PFLU_RS30910	0.76	-0.0
4,172,247	+		PFLU_RS30910	0.76	+0.4
4,172,247	+		PFLU_RS30910	0.76	-1.2
4,172,247	+		PFLU_RS30910	0.76	-0.5
4,172,247	+		PFLU_RS30910	0.76	+1.8
4,172,247	+		PFLU_RS30910	0.76	+1.2
4,172,247	+		PFLU_RS30910	0.76	+1.4
4,172,247	+		PFLU_RS30910	0.76	-0.3
4,172,248	-		PFLU_RS30910	0.76	+0.1
4,172,248	-		PFLU_RS30910	0.76	+0.8
4,172,248	-		PFLU_RS30910	0.76	+1.2
4,172,248	-		PFLU_RS30910	0.76	-0.2
4,172,248	-		PFLU_RS30910	0.76	-0.8
4,172,248	-		PFLU_RS30910	0.76	-0.8
4,172,248	-		PFLU_RS30910	0.76	-0.6
4,172,248	-		PFLU_RS30910	0.76	+0.3
4,172,248	-		PFLU_RS30910	0.76	+0.1
4,172,248	-		PFLU_RS30910	0.76	-0.1
4,172,248	-		PFLU_RS30910	0.76	+0.5
4,172,248	-		PFLU_RS30910	0.76	-0.3
4,172,248	-		PFLU_RS30910	0.76	+0.7
4,172,248	-		PFLU_RS30910	0.76	+0.6
4,172,290	+				+0.0
4,172,291	-				-0.6
4,172,291	-				+1.0
4,172,291	-				+1.6
4,172,314	+				-0.5
4,172,315	-				+0.0
4,172,315	-				-0.8
4,172,334	+				-0.4
4,172,345	+				-0.3
4,172,352	+				+2.5
4,172,352	+				+0.3
4,172,352	+				+1.1
4,172,353	-				-1.7
4,172,353	-				+0.6
4,172,491	-				-1.3
4,172,494	+				-0.9
4,172,494	+				-1.2
4,172,494	+				-0.9
4,172,494	+				+1.3
4,172,494	+				-0.4
4,172,494	+				+0.2
4,172,495	-				-2.3
4,172,495	-				-2.3
4,172,495	-				-1.2
4,172,495	-				-2.6
4,172,495	-				-2.3
4,172,495	-				-1.4
4,172,495	-				-3.3
4,172,495	-				-2.0
4,172,539	+				-3.1
4,172,539	+				-1.3
4,172,539	+				-1.0
4,172,539	+				-1.8
4,172,540	-				-1.8
4,172,540	-				-3.5
4,172,551	+				-2.3
4,172,551	+				-0.9
4,172,566	+				-2.9
4,172,567	-				-1.6
4,172,569	+				-3.5
4,172,569	+				-1.4
4,172,604	+				-3.5
4,172,604	+				-3.6
4,172,604	+				-3.1
4,172,604	+				-2.2
4,172,604	+				-2.0
4,172,605	-				-2.5
4,172,605	-				-2.3
4,172,893	-		PFLU_RS18410	0.14	-2.5
4,173,095	+		PFLU_RS18410	0.21	+0.8
4,173,096	-		PFLU_RS18410	0.21	-2.3
4,173,483	+		PFLU_RS18410	0.35	-2.2
4,173,484	-		PFLU_RS18410	0.35	-2.2
4,174,008	-		PFLU_RS18410	0.54	-3.6
4,174,825	-		PFLU_RS18410	0.84	-2.1
4,174,825	-		PFLU_RS18410	0.84	-3.1
4,174,825	-		PFLU_RS18410	0.84	-2.2
4,175,009	+				-3.5
4,175,010	-				-1.7
4,175,140	+				-3.2
4,175,275	+				+0.4
4,175,275	+				-0.9
4,175,276	-				-0.5
4,175,276	-				-0.1
4,175,282	+				-0.7
4,175,345	+				+0.2
4,175,345	+				+1.6
4,175,345	+				-0.2
4,175,345	+				+1.4
4,175,345	+				+0.1
4,175,346	-				+0.2
4,175,346	-				+1.1
4,175,395	+				+0.0
4,175,395	+				+0.8
4,175,396	-				+0.8
4,175,396	-				-0.8
4,175,396	-				+0.8
4,175,599	+		PFLU_RS18415	0.24	-1.1
4,175,600	-		PFLU_RS18415	0.24	-1.1
4,175,600	-		PFLU_RS18415	0.24	-0.5
4,175,735	-		PFLU_RS18415	0.37	-1.7
4,175,735	-		PFLU_RS18415	0.37	+2.1
4,175,881	+		PFLU_RS18415	0.52	+1.0
4,175,881	+		PFLU_RS18415	0.52	+0.5
4,175,882	-		PFLU_RS18415	0.52	-0.3
4,175,926	+		PFLU_RS18415	0.57	+0.1
4,175,926	+		PFLU_RS18415	0.57	-0.9
4,175,927	-		PFLU_RS18415	0.57	+0.8
4,175,927	-		PFLU_RS18415	0.57	-0.5
4,175,930	+		PFLU_RS18415	0.57	+0.6
4,175,930	+		PFLU_RS18415	0.57	+2.3
4,175,930	+		PFLU_RS18415	0.57	+0.2
4,175,930	+		PFLU_RS18415	0.57	-2.5
4,175,930	+		PFLU_RS18415	0.57	-1.0
4,175,930	+		PFLU_RS18415	0.57	-1.1
4,175,931	-		PFLU_RS18415	0.57	-0.1
4,176,142	+		PFLU_RS18415	0.78	+0.7
4,176,142	+		PFLU_RS18415	0.78	+1.1
4,176,142	+		PFLU_RS18415	0.78	-0.7
4,176,142	+		PFLU_RS18415	0.78	-0.5
4,176,142	+		PFLU_RS18415	0.78	-0.6
4,176,142	+		PFLU_RS18415	0.78	+0.5
4,176,142	+		PFLU_RS18415	0.78	+1.2
4,176,142	+		PFLU_RS18415	0.78	+0.8
4,176,143	-		PFLU_RS18415	0.79	+1.1
4,176,143	-		PFLU_RS18415	0.79	-0.2
4,176,143	-		PFLU_RS18415	0.79	-1.4
4,176,143	-		PFLU_RS18415	0.79	-0.3
4,176,143	-		PFLU_RS18415	0.79	-1.4
4,176,143	-		PFLU_RS18415	0.79	-0.8
4,176,143	-		PFLU_RS18415	0.79	+0.0
4,176,143	-		PFLU_RS18415	0.79	-0.0
4,176,143	-		PFLU_RS18415	0.79	+1.4
4,176,143	-		PFLU_RS18415	0.79	-0.9
4,176,143	-		PFLU_RS18415	0.79	+1.0
4,176,143	-		PFLU_RS18415	0.79	-0.7
4,176,143	-		PFLU_RS18415	0.79	-0.5