Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16435

Experiment: malate (C) and Ammonium chloride (N); with MOPS; with PEG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with MOPS; with PEG
3,728,286	+		PFLU_RS16425	0.81	-1.6
3,728,462	+		PFLU_RS16425	0.87	-0.6
3,728,462	+		PFLU_RS16425	0.87	+1.0
3,728,496	+		PFLU_RS16425	0.89	-0.5
3,728,496	+		PFLU_RS16425	0.89	+0.1
3,728,496	+		PFLU_RS16425	0.89	-1.6
3,728,496	+		PFLU_RS16425	0.89	-0.2
3,728,496	+		PFLU_RS16425	0.89	-0.7
3,728,496	+		PFLU_RS16425	0.89	-3.0
3,728,496	+		PFLU_RS16425	0.89	+1.2
3,728,496	+		PFLU_RS16425	0.89	-1.4
3,728,497	-		PFLU_RS16425	0.89	-1.3
3,728,497	-		PFLU_RS16425	0.89	+1.1
3,728,497	-		PFLU_RS16425	0.89	-2.2
3,728,497	-		PFLU_RS16425	0.89	-0.2
3,728,497	-		PFLU_RS16425	0.89	+0.3
3,728,497	-		PFLU_RS16425	0.89	-1.9
3,728,497	-		PFLU_RS16425	0.89	+1.8
3,728,497	-		PFLU_RS16425	0.89	-0.9
3,728,497	-		PFLU_RS16425	0.89	-1.2
3,728,498	+		PFLU_RS16425	0.89	-1.6
3,728,498	+		PFLU_RS16425	0.89	-0.8
3,728,498	+		PFLU_RS16425	0.89	-1.6
3,728,498	+		PFLU_RS16425	0.89	-1.1
3,728,498	+		PFLU_RS16425	0.89	+0.8
3,728,498	+		PFLU_RS16425	0.89	+0.3
3,728,498	+		PFLU_RS16425	0.89	-1.8
3,728,498	+		PFLU_RS16425	0.89	-1.4
3,728,498	+		PFLU_RS16425	0.89	-0.8
3,728,498	+		PFLU_RS16425	0.89	-2.0
3,728,498	+		PFLU_RS16425	0.89	+1.0
3,728,498	+		PFLU_RS16425	0.89	-0.7
3,728,499	-		PFLU_RS16425	0.89	-0.6
3,728,499	-		PFLU_RS16425	0.89	-0.4
3,728,499	-		PFLU_RS16425	0.89	-0.2
3,728,499	-		PFLU_RS16425	0.89	-1.0
3,728,499	-		PFLU_RS16425	0.89	-0.3
3,728,499	-		PFLU_RS16425	0.89	-0.6
3,728,499	-		PFLU_RS16425	0.89	-0.0
3,728,499	-		PFLU_RS16425	0.89	+0.8
3,728,499	-		PFLU_RS16425	0.89	-1.0
3,728,499	-		PFLU_RS16425	0.89	-2.4
3,728,499	-		PFLU_RS16425	0.89	-0.7
3,728,568	+				-1.9
3,728,568	+				+0.0
3,728,568	+				+0.2
3,728,569	-				-1.0
3,728,569	-				-2.7
3,728,711	+				+0.1
3,728,711	+				-0.8
3,728,839	+				+0.8
3,728,839	+				-0.7
3,728,839	+				-2.0
3,728,856	+				+0.0
3,729,097	+				-0.0
3,729,097	+				-0.2
3,729,097	+				-0.3
3,729,098	-				-1.0
3,729,156	+				+0.3
3,729,157	-				+0.2
3,729,428	-				-0.8
3,729,428	-				+0.0
3,729,428	-				-1.6
3,729,452	-		PFLU_RS16435	0.10	-2.1
3,729,481	+		PFLU_RS16435	0.12	-0.9
3,729,481	+		PFLU_RS16435	0.12	-0.8
3,729,481	+		PFLU_RS16435	0.12	-2.0
3,729,481	+		PFLU_RS16435	0.12	-0.7
3,729,497	-		PFLU_RS16435	0.13	-1.4
3,729,497	-		PFLU_RS16435	0.13	-1.1
3,729,497	-		PFLU_RS16435	0.13	-0.2
3,729,497	-		PFLU_RS16435	0.13	-1.1
3,729,505	+		PFLU_RS16435	0.13	+0.2
3,729,505	+		PFLU_RS16435	0.13	-2.3
3,729,506	-		PFLU_RS16435	0.13	-2.0
3,729,559	+		PFLU_RS16435	0.15	-0.7
3,729,559	+		PFLU_RS16435	0.15	-1.3
3,729,560	-		PFLU_RS16435	0.15	-1.7
3,729,611	-		PFLU_RS16435	0.18	-2.0
3,729,676	-		PFLU_RS16435	0.21	-2.3
3,729,744	+		PFLU_RS16435	0.24	-1.0
3,729,744	+		PFLU_RS16435	0.24	-2.0
3,729,744	+		PFLU_RS16435	0.24	-2.3
3,729,744	+		PFLU_RS16435	0.24	-1.2
3,729,754	+		PFLU_RS16435	0.24	-2.5
3,729,754	+		PFLU_RS16435	0.24	-0.5
3,729,754	+		PFLU_RS16435	0.24	+1.4
3,729,755	-		PFLU_RS16435	0.24	+0.2
3,729,780	+		PFLU_RS16435	0.26	-0.9
3,729,780	+		PFLU_RS16435	0.26	-1.9
3,729,780	+		PFLU_RS16435	0.26	-1.0
3,729,780	+		PFLU_RS16435	0.26	-0.1
3,729,781	-		PFLU_RS16435	0.26	-0.1
3,729,781	-		PFLU_RS16435	0.26	-0.6
3,729,781	-		PFLU_RS16435	0.26	-2.1
3,729,882	-		PFLU_RS16435	0.30	+0.8
3,729,882	-		PFLU_RS16435	0.30	-0.0
3,729,946	+		PFLU_RS16435	0.33	+1.8
3,729,946	+		PFLU_RS16435	0.33	-1.9
3,729,946	+		PFLU_RS16435	0.33	-1.7
3,729,947	-		PFLU_RS16435	0.33	+0.5
3,729,947	-		PFLU_RS16435	0.33	-3.0
3,729,947	-		PFLU_RS16435	0.33	-1.5
3,729,955	+		PFLU_RS16435	0.34	+0.5
3,729,955	+		PFLU_RS16435	0.34	-0.1
3,729,955	+		PFLU_RS16435	0.34	-0.7
3,729,956	-		PFLU_RS16435	0.34	-2.0
3,729,956	-		PFLU_RS16435	0.34	-0.0
3,729,956	-		PFLU_RS16435	0.34	-0.6
3,729,992	-		PFLU_RS16435	0.35	-2.3
3,729,992	-		PFLU_RS16435	0.35	-1.4
3,730,078	+		PFLU_RS16435	0.39	-1.1
3,730,078	+		PFLU_RS16435	0.39	-1.0
3,730,078	+		PFLU_RS16435	0.39	-1.5
3,730,078	+		PFLU_RS16435	0.39	+0.2
3,730,079	-		PFLU_RS16435	0.39	-2.7
3,730,079	-		PFLU_RS16435	0.39	-1.0
3,730,079	-		PFLU_RS16435	0.39	+0.9
3,730,079	-		PFLU_RS16435	0.39	-0.4
3,730,079	-		PFLU_RS16435	0.39	-1.2
3,730,147	+		PFLU_RS16435	0.43	-0.6
3,730,147	+		PFLU_RS16435	0.43	-0.8
3,730,148	-		PFLU_RS16435	0.43	-0.3
3,730,150	+		PFLU_RS16435	0.43	-1.2
3,730,180	+		PFLU_RS16435	0.44	-2.3
3,730,181	-		PFLU_RS16435	0.44	+0.5
3,730,233	-		PFLU_RS16435	0.47	-1.1
3,730,594	+		PFLU_RS16435	0.63	-1.4
3,730,595	-		PFLU_RS16435	0.63	-1.2
3,730,654	+		PFLU_RS16435	0.66	-1.3
3,730,654	+		PFLU_RS16435	0.66	-1.3
3,730,655	-		PFLU_RS16435	0.66	-1.1
3,730,655	-		PFLU_RS16435	0.66	-1.0
3,730,655	-		PFLU_RS16435	0.66	-1.6
3,730,655	-		PFLU_RS16435	0.66	-0.6
3,730,655	-		PFLU_RS16435	0.66	-1.0
3,730,655	-		PFLU_RS16435	0.66	-2.8
3,730,655	-		PFLU_RS16435	0.66	-2.8
3,730,655	-		PFLU_RS16435	0.66	-0.4
3,730,655	-		PFLU_RS16435	0.66	-1.0
3,730,702	-		PFLU_RS16435	0.68	-1.1
3,730,702	-		PFLU_RS16435	0.68	-1.0
3,730,788	+		PFLU_RS16435	0.72	-0.9
3,730,789	-		PFLU_RS16435	0.72	-0.6
3,730,789	-		PFLU_RS16435	0.72	-1.0
3,730,789	-		PFLU_RS16435	0.72	-0.1
3,730,789	-		PFLU_RS16435	0.72	-1.1
3,731,023	+		PFLU_RS16435	0.83	-2.7
3,731,023	+		PFLU_RS16435	0.83	-2.3
3,731,023	+		PFLU_RS16435	0.83	-1.2
3,731,024	-		PFLU_RS16435	0.83	-1.3
3,731,024	-		PFLU_RS16435	0.83	-1.7
3,731,024	-		PFLU_RS16435	0.83	-1.7
3,731,327	-				-1.0
3,731,327	-				+0.8
3,731,602	+		PFLU_RS16440	0.22	-0.1
3,731,811	+		PFLU_RS16440	0.42	+1.0
3,731,811	+		PFLU_RS16440	0.42	+0.2
3,731,812	-		PFLU_RS16440	0.43	+0.5
3,731,812	-		PFLU_RS16440	0.43	-0.4
3,731,939	+		PFLU_RS16440	0.55	+1.6
3,731,939	+		PFLU_RS16440	0.55	-0.3
3,732,090	+		PFLU_RS16440	0.70	-0.1
3,732,090	+		PFLU_RS16440	0.70	+1.3
3,732,091	-		PFLU_RS16440	0.70	+0.8
3,732,091	-		PFLU_RS16440	0.70	+0.3
3,732,299	+				+0.1
3,732,299	+				-1.0
3,732,299	+				-0.2
3,732,299	+				-0.2
3,732,299	+				+1.6
3,732,299	+				-0.2
3,732,299	+				-0.4
3,732,300	-				-0.3
3,732,300	-				-1.2
3,732,300	-				+0.6
3,732,381	+				+0.8
3,732,381	+				-1.5