Experiment: D-Glucose 5 mM in soil extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004184 and ABIE53_004185 are separated by 79 nucleotides ABIE53_004185 and ABIE53_004186 overlap by 4 nucleotides ABIE53_004186 and ABIE53_004187 are separated by 16 nucleotides ABIE53_004187 and ABIE53_004188 overlap by 20 nucleotides
ABIE53_004184: ABIE53_004184 - 2-dehydropantoate 2-reductase, at 358,713 to 359,648
_004184
ABIE53_004185: ABIE53_004185 - purine nucleosidase, at 359,728 to 360,693
_004185
ABIE53_004186: ABIE53_004186 - cytidine deaminase, at 360,690 to 361,079
_004186
ABIE53_004187: ABIE53_004187 - nucleoside permease NupC, at 361,096 to 361,236
_004187
ABIE53_004188: ABIE53_004188 - nucleoside transporter, at 361,217 to 362,374
_004188
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 358.741 kb on + strand at 358.741 kb on + strand at 358.742 kb on - strand at 358.742 kb on - strand at 358.758 kb on - strand at 358.759 kb on + strand at 358.835 kb on + strand, within ABIE53_004184 at 358.866 kb on + strand, within ABIE53_004184 at 358.867 kb on - strand, within ABIE53_004184 at 358.950 kb on - strand, within ABIE53_004184 at 359.060 kb on + strand, within ABIE53_004184 at 359.060 kb on + strand, within ABIE53_004184 at 359.060 kb on + strand, within ABIE53_004184 at 359.061 kb on - strand, within ABIE53_004184 at 359.061 kb on - strand, within ABIE53_004184 at 359.327 kb on + strand, within ABIE53_004184 at 359.327 kb on + strand, within ABIE53_004184 at 359.413 kb on + strand, within ABIE53_004184 at 359.414 kb on - strand, within ABIE53_004184 at 359.414 kb on - strand, within ABIE53_004184 at 359.414 kb on - strand, within ABIE53_004184 at 359.414 kb on - strand, within ABIE53_004184 at 359.414 kb on - strand, within ABIE53_004184 at 359.414 kb on - strand, within ABIE53_004184 at 359.414 kb on - strand, within ABIE53_004184 at 359.492 kb on + strand, within ABIE53_004184 at 359.608 kb on + strand at 359.688 kb on + strand at 359.689 kb on - strand at 359.689 kb on - strand at 359.689 kb on - strand at 359.756 kb on + strand at 359.756 kb on + strand at 359.756 kb on + strand at 359.757 kb on - strand at 359.759 kb on - strand at 359.918 kb on + strand, within ABIE53_004185 at 359.919 kb on - strand, within ABIE53_004185 at 359.919 kb on - strand, within ABIE53_004185 at 359.919 kb on - strand, within ABIE53_004185 at 359.940 kb on - strand, within ABIE53_004185 at 359.966 kb on + strand, within ABIE53_004185 at 359.966 kb on + strand, within ABIE53_004185 at 359.966 kb on + strand, within ABIE53_004185 at 359.966 kb on + strand, within ABIE53_004185 at 359.967 kb on - strand, within ABIE53_004185 at 359.967 kb on - strand, within ABIE53_004185 at 359.967 kb on - strand, within ABIE53_004185 at 359.967 kb on - strand, within ABIE53_004185 at 359.977 kb on + strand, within ABIE53_004185 at 360.008 kb on + strand, within ABIE53_004185 at 360.009 kb on - strand, within ABIE53_004185 at 360.020 kb on - strand, within ABIE53_004185 at 360.075 kb on - strand, within ABIE53_004185 at 360.075 kb on - strand, within ABIE53_004185 at 360.247 kb on + strand, within ABIE53_004185 at 360.248 kb on - strand, within ABIE53_004185 at 360.672 kb on - strand at 360.693 kb on + strand at 360.693 kb on + strand at 360.697 kb on + strand at 360.698 kb on - strand at 360.698 kb on - strand at 360.698 kb on - strand at 360.698 kb on - strand at 360.912 kb on - strand, within ABIE53_004186 at 360.937 kb on + strand, within ABIE53_004186 at 360.937 kb on + strand, within ABIE53_004186 at 360.937 kb on + strand, within ABIE53_004186 at 360.937 kb on + strand, within ABIE53_004186 at 361.028 kb on - strand, within ABIE53_004186 at 361.028 kb on - strand, within ABIE53_004186 at 361.107 kb on + strand at 361.267 kb on + strand at 361.285 kb on - strand at 361.368 kb on - strand, within ABIE53_004188
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 5 mM in soil extract remove 358,741 + +1.5 358,741 + -0.4 358,742 - -2.3 358,742 - +1.4 358,758 - +1.4 358,759 + +0.5 358,835 + ABIE53_004184 0.13 -0.8 358,866 + ABIE53_004184 0.16 -0.6 358,867 - ABIE53_004184 0.16 +0.2 358,950 - ABIE53_004184 0.25 +0.3 359,060 + ABIE53_004184 0.37 -0.5 359,060 + ABIE53_004184 0.37 -1.8 359,060 + ABIE53_004184 0.37 -0.8 359,061 - ABIE53_004184 0.37 -1.1 359,061 - ABIE53_004184 0.37 +0.2 359,327 + ABIE53_004184 0.66 -2.3 359,327 + ABIE53_004184 0.66 -1.1 359,413 + ABIE53_004184 0.75 +1.2 359,414 - ABIE53_004184 0.75 -0.5 359,414 - ABIE53_004184 0.75 +0.7 359,414 - ABIE53_004184 0.75 +0.9 359,414 - ABIE53_004184 0.75 +0.1 359,414 - ABIE53_004184 0.75 +0.2 359,414 - ABIE53_004184 0.75 -1.0 359,414 - ABIE53_004184 0.75 -1.2 359,492 + ABIE53_004184 0.83 +0.4 359,608 + -0.8 359,688 + -1.8 359,689 - -1.3 359,689 - -0.1 359,689 - +0.3 359,756 + +3.7 359,756 + -0.0 359,756 + -1.7 359,757 - -1.7 359,759 - -1.4 359,918 + ABIE53_004185 0.20 +3.1 359,919 - ABIE53_004185 0.20 +0.5 359,919 - ABIE53_004185 0.20 +1.0 359,919 - ABIE53_004185 0.20 +1.3 359,940 - ABIE53_004185 0.22 -1.7 359,966 + ABIE53_004185 0.25 -1.6 359,966 + ABIE53_004185 0.25 +1.3 359,966 + ABIE53_004185 0.25 +0.1 359,966 + ABIE53_004185 0.25 +0.7 359,967 - ABIE53_004185 0.25 -1.3 359,967 - ABIE53_004185 0.25 -0.1 359,967 - ABIE53_004185 0.25 +1.0 359,967 - ABIE53_004185 0.25 +0.4 359,977 + ABIE53_004185 0.26 -1.4 360,008 + ABIE53_004185 0.29 -1.7 360,009 - ABIE53_004185 0.29 +0.7 360,020 - ABIE53_004185 0.30 +1.4 360,075 - ABIE53_004185 0.36 +0.9 360,075 - ABIE53_004185 0.36 +0.2 360,247 + ABIE53_004185 0.54 -0.1 360,248 - ABIE53_004185 0.54 -0.6 360,672 - +0.4 360,693 + -1.4 360,693 + +0.7 360,697 + -1.5 360,698 - -0.3 360,698 - -1.5 360,698 - -0.4 360,698 - +0.2 360,912 - ABIE53_004186 0.57 -0.5 360,937 + ABIE53_004186 0.63 +1.1 360,937 + ABIE53_004186 0.63 +0.1 360,937 + ABIE53_004186 0.63 +1.1 360,937 + ABIE53_004186 0.63 +2.3 361,028 - ABIE53_004186 0.87 +1.5 361,028 - ABIE53_004186 0.87 +0.8 361,107 + -0.2 361,267 + +1.4 361,285 - +0.0 361,368 - ABIE53_004188 0.13 -1.6
Or see this region's nucleotide sequence