Experiment: D-Glucose 5 mM in soil extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003820 and ABIE53_003821 are separated by 236 nucleotides ABIE53_003821 and ABIE53_001630 are separated by 75 nucleotides ABIE53_001630 and ABIE53_001631 are separated by 22 nucleotides
ABIE53_003820: ABIE53_003820 - 23S ribosomal RNA, at 1,813,705 to 1,816,588
_003820
ABIE53_003821: ABIE53_003821 - 5S ribosomal RNA, at 1,816,825 to 1,816,938
_003821
ABIE53_001630: ABIE53_001630 - putative secreted hydrolase, at 1,817,014 to 1,817,208
_001630
ABIE53_001631: ABIE53_001631 - hypothetical protein, at 1,817,231 to 1,817,935
_001631
Position (kb) 1816
1817 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1816.738 kb on + strand at 1816.738 kb on + strand at 1816.738 kb on + strand at 1816.770 kb on + strand at 1816.770 kb on + strand at 1816.771 kb on - strand at 1816.790 kb on + strand at 1816.790 kb on + strand at 1816.790 kb on + strand at 1817.063 kb on + strand, within ABIE53_001630 at 1817.063 kb on + strand, within ABIE53_001630 at 1817.064 kb on - strand, within ABIE53_001630 at 1817.064 kb on - strand, within ABIE53_001630 at 1817.118 kb on - strand, within ABIE53_001630 at 1817.220 kb on - strand at 1817.286 kb on - strand at 1817.306 kb on - strand, within ABIE53_001631 at 1817.332 kb on + strand, within ABIE53_001631 at 1817.333 kb on - strand, within ABIE53_001631 at 1817.333 kb on - strand, within ABIE53_001631 at 1817.333 kb on - strand, within ABIE53_001631 at 1817.333 kb on - strand, within ABIE53_001631 at 1817.392 kb on + strand, within ABIE53_001631 at 1817.393 kb on - strand, within ABIE53_001631 at 1817.393 kb on - strand, within ABIE53_001631 at 1817.416 kb on + strand, within ABIE53_001631 at 1817.417 kb on - strand, within ABIE53_001631 at 1817.495 kb on + strand, within ABIE53_001631 at 1817.495 kb on + strand, within ABIE53_001631 at 1817.496 kb on - strand, within ABIE53_001631 at 1817.496 kb on - strand, within ABIE53_001631 at 1817.496 kb on - strand, within ABIE53_001631 at 1817.496 kb on - strand, within ABIE53_001631 at 1817.627 kb on - strand, within ABIE53_001631 at 1817.827 kb on + strand, within ABIE53_001631 at 1817.827 kb on + strand, within ABIE53_001631 at 1817.827 kb on + strand, within ABIE53_001631 at 1817.827 kb on + strand, within ABIE53_001631 at 1817.828 kb on - strand, within ABIE53_001631 at 1817.828 kb on - strand, within ABIE53_001631 at 1817.828 kb on - strand, within ABIE53_001631 at 1817.828 kb on - strand, within ABIE53_001631 at 1817.828 kb on - strand, within ABIE53_001631
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 5 mM in soil extract remove 1,816,738 + +1.0 1,816,738 + -0.1 1,816,738 + +0.7 1,816,770 + -0.2 1,816,770 + -0.1 1,816,771 - -2.9 1,816,790 + -1.1 1,816,790 + -2.4 1,816,790 + +2.0 1,817,063 + ABIE53_001630 0.25 -1.1 1,817,063 + ABIE53_001630 0.25 -1.4 1,817,064 - ABIE53_001630 0.26 -2.5 1,817,064 - ABIE53_001630 0.26 -1.6 1,817,118 - ABIE53_001630 0.53 -2.7 1,817,220 - -0.9 1,817,286 - +0.1 1,817,306 - ABIE53_001631 0.11 -1.6 1,817,332 + ABIE53_001631 0.14 -1.4 1,817,333 - ABIE53_001631 0.14 -0.1 1,817,333 - ABIE53_001631 0.14 -1.4 1,817,333 - ABIE53_001631 0.14 -0.3 1,817,333 - ABIE53_001631 0.14 +0.4 1,817,392 + ABIE53_001631 0.23 -0.8 1,817,393 - ABIE53_001631 0.23 +1.7 1,817,393 - ABIE53_001631 0.23 -0.6 1,817,416 + ABIE53_001631 0.26 -0.5 1,817,417 - ABIE53_001631 0.26 +0.7 1,817,495 + ABIE53_001631 0.37 -0.6 1,817,495 + ABIE53_001631 0.37 -1.4 1,817,496 - ABIE53_001631 0.38 +0.7 1,817,496 - ABIE53_001631 0.38 -1.6 1,817,496 - ABIE53_001631 0.38 +0.6 1,817,496 - ABIE53_001631 0.38 -0.7 1,817,627 - ABIE53_001631 0.56 -0.6 1,817,827 + ABIE53_001631 0.85 -0.3 1,817,827 + ABIE53_001631 0.85 +0.1 1,817,827 + ABIE53_001631 0.85 +1.3 1,817,827 + ABIE53_001631 0.85 +0.8 1,817,828 - ABIE53_001631 0.85 -0.4 1,817,828 - ABIE53_001631 0.85 -0.3 1,817,828 - ABIE53_001631 0.85 +1.5 1,817,828 - ABIE53_001631 0.85 +0.1 1,817,828 - ABIE53_001631 0.85 +0.8
Or see this region's nucleotide sequence