Experiment: Carbon source D-Glucose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02340 and PGA1_262p02350 are separated by 104 nucleotides PGA1_262p02350 and PGA1_262p02360 are separated by 40 nucleotides PGA1_262p02360 and PGA1_262p02370 are separated by 9 nucleotides PGA1_262p02370 and PGA1_262p02380 overlap by 4 nucleotides
PGA1_262p02340: PGA1_262p02340 - putative transcriptional regulator, TetR family, at 256,631 to 257,278
_262p02340
PGA1_262p02350: PGA1_262p02350 - histidine transport ATP-binding protein HisP, at 257,383 to 258,228
_262p02350
PGA1_262p02360: PGA1_262p02360 - putative histidine-binding periplasmic protein, at 258,269 to 259,048
_262p02360
PGA1_262p02370: PGA1_262p02370 - putative histidine transport system permease protein HisQ, at 259,058 to 259,810
_262p02370
PGA1_262p02380: PGA1_262p02380 - putative histidine transport system permease protein HisM, at 259,807 to 260,583
_262p02380
Position (kb) 258
259
260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 257.287 kb on + strand at 257.295 kb on - strand at 257.300 kb on + strand at 257.445 kb on - strand at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.570 kb on - strand, within PGA1_262p02350 at 257.619 kb on - strand, within PGA1_262p02350 at 257.676 kb on - strand, within PGA1_262p02350 at 257.699 kb on + strand, within PGA1_262p02350 at 257.737 kb on + strand, within PGA1_262p02350 at 257.742 kb on + strand, within PGA1_262p02350 at 257.745 kb on - strand, within PGA1_262p02350 at 257.852 kb on - strand, within PGA1_262p02350 at 257.852 kb on - strand, within PGA1_262p02350 at 258.018 kb on + strand, within PGA1_262p02350 at 258.197 kb on + strand at 258.439 kb on + strand, within PGA1_262p02360 at 258.439 kb on + strand, within PGA1_262p02360 at 258.477 kb on - strand, within PGA1_262p02360 at 258.501 kb on + strand, within PGA1_262p02360 at 258.691 kb on + strand, within PGA1_262p02360 at 258.761 kb on - strand, within PGA1_262p02360 at 258.795 kb on + strand, within PGA1_262p02360 at 258.876 kb on - strand, within PGA1_262p02360 at 258.877 kb on - strand, within PGA1_262p02360 at 258.931 kb on - strand, within PGA1_262p02360 at 259.041 kb on - strand at 259.046 kb on - strand at 259.095 kb on - strand at 259.274 kb on + strand, within PGA1_262p02370 at 259.274 kb on + strand, within PGA1_262p02370 at 259.274 kb on + strand, within PGA1_262p02370 at 259.282 kb on - strand, within PGA1_262p02370 at 259.329 kb on + strand, within PGA1_262p02370 at 259.524 kb on - strand, within PGA1_262p02370 at 259.533 kb on + strand, within PGA1_262p02370 at 259.568 kb on - strand, within PGA1_262p02370 at 259.809 kb on - strand at 259.916 kb on + strand, within PGA1_262p02380 at 259.985 kb on + strand, within PGA1_262p02380 at 259.985 kb on + strand, within PGA1_262p02380 at 259.986 kb on - strand, within PGA1_262p02380 at 260.030 kb on + strand, within PGA1_262p02380
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM remove 257,287 + -1.6 257,295 - +0.3 257,300 + -1.0 257,445 - +0.9 257,532 + PGA1_262p02350 0.18 -2.1 257,532 + PGA1_262p02350 0.18 +1.1 257,532 + PGA1_262p02350 0.18 +1.2 257,540 + PGA1_262p02350 0.19 +0.4 257,540 + PGA1_262p02350 0.19 +0.7 257,570 - PGA1_262p02350 0.22 +1.0 257,619 - PGA1_262p02350 0.28 +0.5 257,676 - PGA1_262p02350 0.35 +1.4 257,699 + PGA1_262p02350 0.37 +1.5 257,737 + PGA1_262p02350 0.42 +0.2 257,742 + PGA1_262p02350 0.42 -0.7 257,745 - PGA1_262p02350 0.43 +1.6 257,852 - PGA1_262p02350 0.55 -1.4 257,852 - PGA1_262p02350 0.55 -0.4 258,018 + PGA1_262p02350 0.75 -0.5 258,197 + -1.6 258,439 + PGA1_262p02360 0.22 -0.4 258,439 + PGA1_262p02360 0.22 -1.3 258,477 - PGA1_262p02360 0.27 -0.8 258,501 + PGA1_262p02360 0.30 +0.6 258,691 + PGA1_262p02360 0.54 -1.3 258,761 - PGA1_262p02360 0.63 -1.1 258,795 + PGA1_262p02360 0.67 -0.4 258,876 - PGA1_262p02360 0.78 +1.2 258,877 - PGA1_262p02360 0.78 -0.9 258,931 - PGA1_262p02360 0.85 -1.2 259,041 - -0.4 259,046 - -2.5 259,095 - +1.2 259,274 + PGA1_262p02370 0.29 +0.6 259,274 + PGA1_262p02370 0.29 -0.3 259,274 + PGA1_262p02370 0.29 +0.4 259,282 - PGA1_262p02370 0.30 -0.7 259,329 + PGA1_262p02370 0.36 -3.3 259,524 - PGA1_262p02370 0.62 -1.9 259,533 + PGA1_262p02370 0.63 +0.9 259,568 - PGA1_262p02370 0.68 -0.2 259,809 - -0.5 259,916 + PGA1_262p02380 0.14 +3.0 259,985 + PGA1_262p02380 0.23 +0.5 259,985 + PGA1_262p02380 0.23 -0.4 259,986 - PGA1_262p02380 0.23 -0.1 260,030 + PGA1_262p02380 0.29 -0.1
Or see this region's nucleotide sequence