Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12095

Experiment: Sucrose (C) and Glycine betaine (N); with TAPS; with PEG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose (C) and Glycine betaine (N); with TAPS; with PEG
2,685,057	+				-0.1
2,685,164	+		PFLU_RS12090	0.18	+0.3
2,685,164	+		PFLU_RS12090	0.18	-1.6
2,685,165	-		PFLU_RS12090	0.18	+0.6
2,685,165	-		PFLU_RS12090	0.18	-1.7
2,685,225	+		PFLU_RS12090	0.23	-0.3
2,685,225	+		PFLU_RS12090	0.23	-0.1
2,685,225	+		PFLU_RS12090	0.23	+0.2
2,685,225	+		PFLU_RS12090	0.23	-0.6
2,685,225	+		PFLU_RS12090	0.23	+0.6
2,685,225	+		PFLU_RS12090	0.23	+0.7
2,685,226	-		PFLU_RS12090	0.23	-0.4
2,685,226	-		PFLU_RS12090	0.23	+1.3
2,685,226	-		PFLU_RS12090	0.23	-0.2
2,685,226	-		PFLU_RS12090	0.23	-1.1
2,685,334	+		PFLU_RS12090	0.34	+0.7
2,685,334	+		PFLU_RS12090	0.34	+0.9
2,685,335	-		PFLU_RS12090	0.34	-0.5
2,685,335	-		PFLU_RS12090	0.34	-0.0
2,685,507	+		PFLU_RS12090	0.50	+0.5
2,685,507	+		PFLU_RS12090	0.50	-0.5
2,685,508	-		PFLU_RS12090	0.50	-0.2
2,685,508	-		PFLU_RS12090	0.50	-0.1
2,685,553	+		PFLU_RS12090	0.55	+0.4
2,685,555	+		PFLU_RS12090	0.55	-1.6
2,685,555	+		PFLU_RS12090	0.55	+0.2
2,685,555	+		PFLU_RS12090	0.55	+0.2
2,685,555	+		PFLU_RS12090	0.55	-0.3
2,685,555	+		PFLU_RS12090	0.55	-0.2
2,685,555	+		PFLU_RS12090	0.55	+0.3
2,685,555	+		PFLU_RS12090	0.55	+0.1
2,685,555	+		PFLU_RS12090	0.55	-1.0
2,685,556	-		PFLU_RS12090	0.55	+0.4
2,685,624	+		PFLU_RS12090	0.62	-0.2
2,685,624	+		PFLU_RS12090	0.62	+1.2
2,685,625	-		PFLU_RS12090	0.62	-0.5
2,685,696	+		PFLU_RS12090	0.68	+0.2
2,685,696	+		PFLU_RS12090	0.68	-0.1
2,685,696	+		PFLU_RS12090	0.68	+0.4
2,685,696	+		PFLU_RS12090	0.68	+1.6
2,685,696	+		PFLU_RS12090	0.68	-1.8
2,685,696	+		PFLU_RS12090	0.68	+0.6
2,685,697	-		PFLU_RS12090	0.69	-0.1
2,685,697	-		PFLU_RS12090	0.69	-1.4
2,685,819	+		PFLU_RS12090	0.80	-0.3
2,685,840	-		PFLU_RS12090	0.82	+0.1
2,685,840	-		PFLU_RS12090	0.82	-0.5
2,685,941	-				+0.3
2,686,012	+				-1.0
2,686,013	-				+0.3
2,686,013	-				-0.4
2,686,026	+				+0.3
2,686,026	+				-0.9
2,686,026	+				-0.6
2,686,026	+				-0.2
2,686,026	+				-0.1
2,686,027	-				+1.0
2,686,027	-				-0.0
2,686,027	-				+0.3
2,686,027	-				+0.5
2,686,027	-				-1.1
2,686,027	-				+0.6
2,686,027	-				+0.9
2,686,027	-				+0.4
2,686,027	-				-0.0
2,686,027	-				-0.9
2,686,027	-				+0.1
2,686,028	+				-2.0
2,686,028	+				-0.3
2,686,028	+				+0.1
2,686,028	+				+0.9
2,686,028	+				-0.9
2,686,028	+				+0.5
2,686,028	+				-0.4
2,686,029	-				-2.0
2,686,029	-				+0.1
2,686,029	-				+0.5
2,686,029	-				+1.0
2,686,029	-				+0.1
2,686,050	-				+1.2
2,686,064	+				-0.3
2,686,064	+				+1.3
2,686,065	-				+2.6
2,686,065	-				+1.5
2,686,067	+				+2.3
2,686,067	+				+0.2
2,686,068	-				+1.8
2,686,155	-		PFLU_RS12095	0.12	+2.5
2,686,193	+		PFLU_RS12095	0.16	+1.4
2,686,271	+		PFLU_RS12095	0.24	+2.1
2,686,271	+		PFLU_RS12095	0.24	+2.2
2,686,272	-		PFLU_RS12095	0.25	+1.8
2,686,272	-		PFLU_RS12095	0.25	+1.2
2,686,289	+		PFLU_RS12095	0.26	+1.4
2,686,289	+		PFLU_RS12095	0.26	+1.8
2,686,289	+		PFLU_RS12095	0.26	-0.4
2,686,289	+		PFLU_RS12095	0.26	+0.4
2,686,289	+		PFLU_RS12095	0.26	+0.3
2,686,289	+		PFLU_RS12095	0.26	+1.0
2,686,289	+		PFLU_RS12095	0.26	+0.6
2,686,289	+		PFLU_RS12095	0.26	+1.5
2,686,289	+		PFLU_RS12095	0.26	+2.3
2,686,289	+		PFLU_RS12095	0.26	-0.6
2,686,289	+		PFLU_RS12095	0.26	+1.0
2,686,289	+		PFLU_RS12095	0.26	+2.0
2,686,289	+		PFLU_RS12095	0.26	+3.2
2,686,289	+		PFLU_RS12095	0.26	+0.4
2,686,289	+		PFLU_RS12095	0.26	+2.0
2,686,290	-		PFLU_RS12095	0.26	+1.4
2,686,290	-		PFLU_RS12095	0.26	+1.8
2,686,290	-		PFLU_RS12095	0.26	+1.8
2,686,290	-		PFLU_RS12095	0.26	+1.3
2,686,290	-		PFLU_RS12095	0.26	+1.2
2,686,290	-		PFLU_RS12095	0.26	+1.4
2,686,290	-		PFLU_RS12095	0.26	+1.0
2,686,290	-		PFLU_RS12095	0.26	+2.6
2,686,290	-		PFLU_RS12095	0.26	+1.2
2,686,290	-		PFLU_RS12095	0.26	+1.3
2,686,290	-		PFLU_RS12095	0.26	+2.3
2,686,290	-		PFLU_RS12095	0.26	+1.8
2,686,334	+		PFLU_RS12095	0.31	+0.6
2,686,334	+		PFLU_RS12095	0.31	+1.4
2,686,334	+		PFLU_RS12095	0.31	+1.6
2,686,334	+		PFLU_RS12095	0.31	+1.7
2,686,334	+		PFLU_RS12095	0.31	-0.0
2,686,334	+		PFLU_RS12095	0.31	+1.9
2,686,335	-		PFLU_RS12095	0.31	+0.6
2,686,335	-		PFLU_RS12095	0.31	+2.1
2,686,335	-		PFLU_RS12095	0.31	+2.0
2,686,335	-		PFLU_RS12095	0.31	+1.7
2,686,335	-		PFLU_RS12095	0.31	+1.5
2,686,335	-		PFLU_RS12095	0.31	+2.8
2,686,335	-		PFLU_RS12095	0.31	+0.4
2,686,367	+		PFLU_RS12095	0.35	+2.7
2,686,367	+		PFLU_RS12095	0.35	+1.9
2,686,367	+		PFLU_RS12095	0.35	+3.4
2,686,368	-		PFLU_RS12095	0.35	+1.2
2,686,368	-		PFLU_RS12095	0.35	-0.2
2,686,386	-		PFLU_RS12095	0.37	+1.7
2,686,386	-		PFLU_RS12095	0.37	+1.2
2,686,386	-		PFLU_RS12095	0.37	+2.2
2,686,409	+		PFLU_RS12095	0.39	+0.1
2,686,410	-		PFLU_RS12095	0.39	+0.7
2,686,469	+		PFLU_RS12095	0.45	+2.3
2,686,470	-		PFLU_RS12095	0.45	+2.0
2,686,470	-		PFLU_RS12095	0.45	+2.2
2,686,511	+		PFLU_RS12095	0.50	+1.0
2,686,511	+		PFLU_RS12095	0.50	+1.2
2,686,511	+		PFLU_RS12095	0.50	+2.0
2,686,512	-		PFLU_RS12095	0.50	+2.1
2,686,512	-		PFLU_RS12095	0.50	+1.6
2,686,512	-		PFLU_RS12095	0.50	+2.1
2,686,512	-		PFLU_RS12095	0.50	+1.9
2,686,532	+		PFLU_RS12095	0.52	+1.4
2,686,532	+		PFLU_RS12095	0.52	+0.3
2,686,532	+		PFLU_RS12095	0.52	+2.5
2,686,532	+		PFLU_RS12095	0.52	+1.6
2,686,532	+		PFLU_RS12095	0.52	+1.7
2,686,532	+		PFLU_RS12095	0.52	+1.4
2,686,532	+		PFLU_RS12095	0.52	+4.8
2,686,532	+		PFLU_RS12095	0.52	+0.9
2,686,533	-		PFLU_RS12095	0.52	+2.7
2,686,533	-		PFLU_RS12095	0.52	+2.0
2,686,533	-		PFLU_RS12095	0.52	+1.5
2,686,533	-		PFLU_RS12095	0.52	+1.6
2,686,533	-		PFLU_RS12095	0.52	+1.2
2,686,533	-		PFLU_RS12095	0.52	+0.8
2,686,533	-		PFLU_RS12095	0.52	-0.3
2,686,533	-		PFLU_RS12095	0.52	+0.4
2,686,533	-		PFLU_RS12095	0.52	+2.6
2,686,533	-		PFLU_RS12095	0.52	+2.4
2,686,533	-		PFLU_RS12095	0.52	+0.7
2,686,578	-		PFLU_RS12095	0.57	+1.7
2,686,590	+		PFLU_RS12095	0.58	+3.3
2,686,590	+		PFLU_RS12095	0.58	+2.3
2,686,590	+		PFLU_RS12095	0.58	+0.5
2,686,590	+		PFLU_RS12095	0.58	+1.4
2,686,590	+		PFLU_RS12095	0.58	+1.4
2,686,591	-		PFLU_RS12095	0.58	+2.0
2,686,591	-		PFLU_RS12095	0.58	+0.8
2,686,591	-		PFLU_RS12095	0.58	+1.5
2,686,591	-		PFLU_RS12095	0.58	+1.5
2,686,591	-		PFLU_RS12095	0.58	+3.1
2,686,591	-		PFLU_RS12095	0.58	-0.6
2,686,683	+		PFLU_RS12095	0.68	+2.6
2,686,685	+		PFLU_RS12095	0.68	-0.7
2,686,685	+		PFLU_RS12095	0.68	+1.2
2,686,685	+		PFLU_RS12095	0.68	+0.6
2,686,685	+		PFLU_RS12095	0.68	+2.8
2,686,685	+		PFLU_RS12095	0.68	+1.2
2,686,685	+		PFLU_RS12095	0.68	+1.6
2,686,685	+		PFLU_RS12095	0.68	+2.2
2,686,686	-		PFLU_RS12095	0.68	+2.0
2,686,686	-		PFLU_RS12095	0.68	+1.9
2,686,686	-		PFLU_RS12095	0.68	-0.7
2,686,686	-		PFLU_RS12095	0.68	+2.6
2,686,686	-		PFLU_RS12095	0.68	+0.9
2,686,686	-		PFLU_RS12095	0.68	+1.8
2,686,686	-		PFLU_RS12095	0.68	+1.5
2,686,691	+		PFLU_RS12095	0.69	+0.2
2,686,691	+		PFLU_RS12095	0.69	-0.5
2,686,692	-		PFLU_RS12095	0.69	+1.9
2,686,692	-		PFLU_RS12095	0.69	+1.7
2,686,693	+		PFLU_RS12095	0.69	+0.7
2,686,693	+		PFLU_RS12095	0.69	+1.4
2,686,693	+		PFLU_RS12095	0.69	+0.8
2,686,694	-		PFLU_RS12095	0.69	+1.0
2,686,694	-		PFLU_RS12095	0.69	+0.7
2,686,694	-		PFLU_RS12095	0.69	+1.9
2,686,694	-		PFLU_RS12095	0.69	+2.5
2,686,694	-		PFLU_RS12095	0.69	+1.5
2,686,721	+		PFLU_RS12095	0.72	+0.3
2,686,721	+		PFLU_RS12095	0.72	+1.7
2,686,721	+		PFLU_RS12095	0.72	+0.1
2,686,721	+		PFLU_RS12095	0.72	+0.9
2,686,721	+		PFLU_RS12095	0.72	+1.7
2,686,722	-		PFLU_RS12095	0.72	+2.0
2,686,728	-		PFLU_RS12095	0.73	+1.6
2,686,736	+		PFLU_RS12095	0.74	-0.0
2,686,736	+		PFLU_RS12095	0.74	+2.8
2,686,736	+		PFLU_RS12095	0.74	+2.5
2,686,737	-		PFLU_RS12095	0.74	+2.7
2,686,737	-		PFLU_RS12095	0.74	+2.1
2,686,737	-		PFLU_RS12095	0.74	+1.2
2,686,740	+		PFLU_RS12095	0.74	+1.3
2,686,740	+		PFLU_RS12095	0.74	+1.8
2,686,740	+		PFLU_RS12095	0.74	+0.2
2,686,740	+		PFLU_RS12095	0.74	+0.3
2,686,740	+		PFLU_RS12095	0.74	+1.7
2,686,740	+		PFLU_RS12095	0.74	+2.1
2,686,740	+		PFLU_RS12095	0.74	+0.3
2,686,740	+		PFLU_RS12095	0.74	+1.3
2,686,740	+		PFLU_RS12095	0.74	+1.1
2,686,740	+		PFLU_RS12095	0.74	+1.3
2,686,741	-		PFLU_RS12095	0.74	+1.6
2,686,741	-		PFLU_RS12095	0.74	+0.6
2,686,741	-		PFLU_RS12095	0.74	+2.4
2,686,741	-		PFLU_RS12095	0.74	+1.1
2,686,741	-		PFLU_RS12095	0.74	+1.1
2,686,741	-		PFLU_RS12095	0.74	+1.3
2,686,741	-		PFLU_RS12095	0.74	+1.4
2,686,820	+		PFLU_RS12095	0.82	+0.5
2,686,820	+		PFLU_RS12095	0.82	+1.4
2,686,820	+		PFLU_RS12095	0.82	+1.3
2,686,821	-		PFLU_RS12095	0.82	+1.3
2,686,821	-		PFLU_RS12095	0.82	+0.8
2,686,821	-		PFLU_RS12095	0.82	+0.6
2,686,939	+				-0.1
2,686,963	-				+1.0
2,687,081	+				+0.4
2,687,081	+				+0.3
2,687,081	+				-0.0
2,687,082	-				-0.5
2,687,082	-				-0.4
2,687,082	-				+0.3
2,687,127	+				-1.3
2,687,128	-				+0.2
2,687,269	+		PFLU_RS12100	0.14	+0.9
2,687,303	+		PFLU_RS12100	0.17	+1.6
2,687,303	+		PFLU_RS12100	0.17	-0.1
2,687,303	+		PFLU_RS12100	0.17	-1.4
2,687,304	-		PFLU_RS12100	0.17	+0.1
2,687,304	-		PFLU_RS12100	0.17	+0.8
2,687,304	-		PFLU_RS12100	0.17	-0.0
2,687,304	-		PFLU_RS12100	0.17	+0.8
2,687,304	-		PFLU_RS12100	0.17	+1.0
2,687,364	-		PFLU_RS12100	0.24	-0.4
2,687,476	+		PFLU_RS12100	0.36	-0.8
2,687,476	+		PFLU_RS12100	0.36	+0.9
2,687,477	-		PFLU_RS12100	0.36	-0.6
2,687,530	+		PFLU_RS12100	0.41	-0.1
2,687,530	+		PFLU_RS12100	0.41	+0.2
2,687,531	-		PFLU_RS12100	0.41	+1.0
2,687,661	+		PFLU_RS12100	0.55	+0.7
2,687,662	-		PFLU_RS12100	0.55	+0.3
2,687,679	-		PFLU_RS12100	0.57	-1.4
2,687,890	+		PFLU_RS12100	0.80	-0.2
2,687,891	-		PFLU_RS12100	0.80	-0.1
2,687,891	-		PFLU_RS12100	0.80	+0.2
2,687,891	-		PFLU_RS12100	0.80	-1.0
2,687,891	-		PFLU_RS12100	0.80	+1.1
2,687,891	-		PFLU_RS12100	0.80	-0.0
2,687,974	+		PFLU_RS12100	0.89	+0.6
2,687,974	+		PFLU_RS12100	0.89	-0.2
2,687,980	+		PFLU_RS12100	0.89	+0.9
2,687,980	+		PFLU_RS12100	0.89	+0.2
2,687,981	-		PFLU_RS12100	0.89	+0.2