Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07610 and PGA1_c07620 are separated by 114 nucleotides PGA1_c07620 and PGA1_c07630 are separated by 169 nucleotides PGA1_c07630 and PGA1_c07640 are separated by 67 nucleotides
PGA1_c07610: PGA1_c07610 - 4-hydroxyphenylpyruvate dioxygenase Hpd, at 786,673 to 787,773
_c07610
PGA1_c07620: PGA1_c07620 - Type IV pilus biogenesis., at 787,888 to 790,587
_c07620
PGA1_c07630: PGA1_c07630 - Uncharacterized conserved protein, at 790,757 to 791,473
_c07630
PGA1_c07640: PGA1_c07640 - O-acetylhomoserine / O-acetylserine sulfhydrylase, at 791,541 to 792,833
_c07640
Position (kb) 787
788
789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 787.037 kb on - strand, within PGA1_c07610 at 787.102 kb on - strand, within PGA1_c07610 at 787.127 kb on + strand, within PGA1_c07610 at 787.127 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.144 kb on - strand, within PGA1_c07610 at 787.144 kb on - strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.165 kb on - strand, within PGA1_c07610 at 787.174 kb on + strand, within PGA1_c07610 at 787.182 kb on - strand, within PGA1_c07610 at 787.182 kb on - strand, within PGA1_c07610 at 787.189 kb on - strand, within PGA1_c07610 at 787.293 kb on + strand, within PGA1_c07610 at 787.296 kb on - strand, within PGA1_c07610 at 787.303 kb on - strand, within PGA1_c07610 at 787.303 kb on - strand, within PGA1_c07610 at 787.313 kb on - strand, within PGA1_c07610 at 787.365 kb on + strand, within PGA1_c07610 at 787.400 kb on + strand, within PGA1_c07610 at 787.496 kb on + strand, within PGA1_c07610 at 787.504 kb on - strand, within PGA1_c07610 at 787.507 kb on - strand, within PGA1_c07610 at 787.510 kb on + strand, within PGA1_c07610 at 787.518 kb on - strand, within PGA1_c07610 at 787.578 kb on + strand, within PGA1_c07610 at 787.591 kb on + strand, within PGA1_c07610 at 787.671 kb on + strand at 787.679 kb on - strand at 787.679 kb on - strand at 787.686 kb on - strand at 787.758 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.777 kb on + strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.785 kb on - strand at 787.879 kb on + strand at 787.879 kb on + strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.887 kb on - strand at 787.922 kb on - strand at 787.956 kb on - strand at 787.999 kb on - strand at 788.051 kb on + strand at 788.078 kb on - strand at 788.098 kb on + strand at 788.120 kb on + strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.153 kb on - strand at 788.178 kb on + strand, within PGA1_c07620 at 788.218 kb on - strand, within PGA1_c07620 at 788.225 kb on + strand, within PGA1_c07620 at 788.228 kb on - strand, within PGA1_c07620 at 788.228 kb on - strand, within PGA1_c07620 at 788.263 kb on + strand, within PGA1_c07620 at 788.263 kb on + strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.271 kb on - strand, within PGA1_c07620 at 788.273 kb on - strand, within PGA1_c07620 at 788.381 kb on + strand, within PGA1_c07620 at 788.505 kb on + strand, within PGA1_c07620 at 788.506 kb on + strand, within PGA1_c07620 at 788.588 kb on + strand, within PGA1_c07620 at 788.596 kb on - strand, within PGA1_c07620 at 788.596 kb on - strand, within PGA1_c07620 at 788.633 kb on + strand, within PGA1_c07620 at 788.634 kb on + strand, within PGA1_c07620 at 788.634 kb on + strand, within PGA1_c07620 at 788.641 kb on - strand, within PGA1_c07620 at 788.642 kb on - strand, within PGA1_c07620 at 788.738 kb on + strand, within PGA1_c07620 at 788.746 kb on - strand, within PGA1_c07620 at 788.762 kb on + strand, within PGA1_c07620 at 788.780 kb on - strand, within PGA1_c07620 at 788.823 kb on - strand, within PGA1_c07620 at 788.829 kb on + strand, within PGA1_c07620 at 788.845 kb on - strand, within PGA1_c07620 at 788.895 kb on + strand, within PGA1_c07620 at 788.914 kb on + strand, within PGA1_c07620 at 788.914 kb on + strand, within PGA1_c07620 at 788.969 kb on + strand, within PGA1_c07620 at 788.997 kb on - strand, within PGA1_c07620 at 789.092 kb on + strand, within PGA1_c07620 at 789.119 kb on - strand, within PGA1_c07620 at 789.129 kb on + strand, within PGA1_c07620 at 789.129 kb on + strand, within PGA1_c07620 at 789.147 kb on - strand, within PGA1_c07620 at 789.203 kb on - strand, within PGA1_c07620 at 789.205 kb on + strand, within PGA1_c07620 at 789.303 kb on + strand, within PGA1_c07620 at 789.310 kb on + strand, within PGA1_c07620 at 789.372 kb on - strand, within PGA1_c07620 at 789.393 kb on - strand, within PGA1_c07620 at 789.393 kb on - strand, within PGA1_c07620 at 789.393 kb on - strand, within PGA1_c07620 at 789.411 kb on + strand, within PGA1_c07620 at 789.479 kb on + strand, within PGA1_c07620 at 789.503 kb on + strand, within PGA1_c07620 at 789.542 kb on - strand, within PGA1_c07620 at 789.568 kb on - strand, within PGA1_c07620 at 789.578 kb on + strand, within PGA1_c07620 at 789.621 kb on - strand, within PGA1_c07620 at 789.774 kb on - strand, within PGA1_c07620 at 789.815 kb on + strand, within PGA1_c07620 at 789.823 kb on - strand, within PGA1_c07620 at 789.833 kb on + strand, within PGA1_c07620 at 789.841 kb on - strand, within PGA1_c07620 at 789.854 kb on + strand, within PGA1_c07620 at 789.877 kb on + strand, within PGA1_c07620 at 789.885 kb on - strand, within PGA1_c07620 at 789.885 kb on - strand, within PGA1_c07620 at 789.919 kb on - strand, within PGA1_c07620 at 789.922 kb on + strand, within PGA1_c07620 at 790.065 kb on + strand, within PGA1_c07620 at 790.065 kb on + strand, within PGA1_c07620 at 790.065 kb on + strand, within PGA1_c07620 at 790.104 kb on + strand, within PGA1_c07620 at 790.108 kb on - strand, within PGA1_c07620 at 790.119 kb on - strand, within PGA1_c07620 at 790.190 kb on - strand, within PGA1_c07620 at 790.324 kb on - strand at 790.542 kb on + strand at 790.569 kb on + strand at 790.606 kb on + strand at 790.614 kb on - strand at 790.616 kb on + strand at 790.624 kb on - strand at 790.624 kb on - strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.803 kb on + strand at 790.808 kb on + strand at 790.808 kb on + strand at 790.910 kb on - strand, within PGA1_c07630 at 790.910 kb on - strand, within PGA1_c07630 at 790.939 kb on + strand, within PGA1_c07630 at 790.992 kb on + strand, within PGA1_c07630 at 791.038 kb on + strand, within PGA1_c07630 at 791.067 kb on + strand, within PGA1_c07630 at 791.111 kb on + strand, within PGA1_c07630 at 791.112 kb on + strand, within PGA1_c07630 at 791.242 kb on - strand, within PGA1_c07630 at 791.247 kb on - strand, within PGA1_c07630 at 791.301 kb on + strand, within PGA1_c07630 at 791.309 kb on - strand, within PGA1_c07630 at 791.359 kb on + strand, within PGA1_c07630 at 791.366 kb on + strand, within PGA1_c07630 at 791.372 kb on + strand, within PGA1_c07630 at 791.507 kb on + strand at 791.514 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 787,037 - PGA1_c07610 0.33 -2.7 787,102 - PGA1_c07610 0.39 -0.5 787,127 + PGA1_c07610 0.41 -0.7 787,127 + PGA1_c07610 0.41 +0.7 787,136 + PGA1_c07610 0.42 -1.2 787,136 + PGA1_c07610 0.42 +0.2 787,136 + PGA1_c07610 0.42 +0.0 787,136 + PGA1_c07610 0.42 +1.2 787,144 - PGA1_c07610 0.43 -0.3 787,144 - PGA1_c07610 0.43 -2.3 787,151 + PGA1_c07610 0.43 +0.3 787,151 + PGA1_c07610 0.43 -0.5 787,151 + PGA1_c07610 0.43 +0.5 787,165 - PGA1_c07610 0.45 -0.3 787,174 + PGA1_c07610 0.46 +0.9 787,182 - PGA1_c07610 0.46 -0.5 787,182 - PGA1_c07610 0.46 +0.4 787,189 - PGA1_c07610 0.47 +0.7 787,293 + PGA1_c07610 0.56 +0.4 787,296 - PGA1_c07610 0.57 -0.5 787,303 - PGA1_c07610 0.57 -0.7 787,303 - PGA1_c07610 0.57 -0.5 787,313 - PGA1_c07610 0.58 -0.1 787,365 + PGA1_c07610 0.63 -0.0 787,400 + PGA1_c07610 0.66 +0.8 787,496 + PGA1_c07610 0.75 +0.3 787,504 - PGA1_c07610 0.75 +0.8 787,507 - PGA1_c07610 0.76 +1.0 787,510 + PGA1_c07610 0.76 +1.1 787,518 - PGA1_c07610 0.77 -0.1 787,578 + PGA1_c07610 0.82 +0.9 787,591 + PGA1_c07610 0.83 +0.0 787,671 + +0.2 787,679 - -0.1 787,679 - +0.3 787,686 - -0.4 787,758 + -1.1 787,777 + -1.5 787,777 + -0.0 787,777 + +1.6 787,777 + -0.4 787,777 + +0.5 787,777 + +0.6 787,777 + -0.7 787,785 - +2.0 787,785 - -1.0 787,785 - -0.6 787,785 - -2.0 787,879 + +0.2 787,879 + +0.4 787,887 - -0.7 787,887 - +0.5 787,887 - +0.4 787,887 - +0.1 787,887 - -1.5 787,887 - +0.2 787,922 - -1.5 787,956 - -2.3 787,999 - -1.0 788,051 + -0.8 788,078 - +0.6 788,098 + -2.4 788,120 + -1.7 788,153 - -2.6 788,153 - -1.3 788,153 - -0.1 788,153 - +1.2 788,178 + PGA1_c07620 0.11 -1.3 788,218 - PGA1_c07620 0.12 +2.5 788,225 + PGA1_c07620 0.12 -2.3 788,228 - PGA1_c07620 0.13 -1.0 788,228 - PGA1_c07620 0.13 -1.0 788,263 + PGA1_c07620 0.14 -2.0 788,263 + PGA1_c07620 0.14 -1.2 788,271 - PGA1_c07620 0.14 -2.6 788,271 - PGA1_c07620 0.14 +0.3 788,271 - PGA1_c07620 0.14 -2.3 788,271 - PGA1_c07620 0.14 -0.5 788,273 - PGA1_c07620 0.14 +1.0 788,381 + PGA1_c07620 0.18 +0.0 788,505 + PGA1_c07620 0.23 +0.5 788,506 + PGA1_c07620 0.23 -0.9 788,588 + PGA1_c07620 0.26 -2.0 788,596 - PGA1_c07620 0.26 -1.8 788,596 - PGA1_c07620 0.26 -1.3 788,633 + PGA1_c07620 0.28 +0.6 788,634 + PGA1_c07620 0.28 -1.5 788,634 + PGA1_c07620 0.28 -0.5 788,641 - PGA1_c07620 0.28 -2.0 788,642 - PGA1_c07620 0.28 -0.3 788,738 + PGA1_c07620 0.31 -0.3 788,746 - PGA1_c07620 0.32 -3.4 788,762 + PGA1_c07620 0.32 -0.7 788,780 - PGA1_c07620 0.33 -1.3 788,823 - PGA1_c07620 0.35 -1.9 788,829 + PGA1_c07620 0.35 -1.9 788,845 - PGA1_c07620 0.35 -2.4 788,895 + PGA1_c07620 0.37 -2.2 788,914 + PGA1_c07620 0.38 -0.9 788,914 + PGA1_c07620 0.38 -0.1 788,969 + PGA1_c07620 0.40 -0.1 788,997 - PGA1_c07620 0.41 -3.1 789,092 + PGA1_c07620 0.45 -2.2 789,119 - PGA1_c07620 0.46 -0.9 789,129 + PGA1_c07620 0.46 -2.4 789,129 + PGA1_c07620 0.46 -1.3 789,147 - PGA1_c07620 0.47 -0.7 789,203 - PGA1_c07620 0.49 +0.5 789,205 + PGA1_c07620 0.49 +0.9 789,303 + PGA1_c07620 0.52 -0.6 789,310 + PGA1_c07620 0.53 -1.4 789,372 - PGA1_c07620 0.55 -0.9 789,393 - PGA1_c07620 0.56 -0.3 789,393 - PGA1_c07620 0.56 -1.3 789,393 - PGA1_c07620 0.56 -2.7 789,411 + PGA1_c07620 0.56 -1.2 789,479 + PGA1_c07620 0.59 -0.5 789,503 + PGA1_c07620 0.60 -1.0 789,542 - PGA1_c07620 0.61 -2.4 789,568 - PGA1_c07620 0.62 +0.9 789,578 + PGA1_c07620 0.63 -1.1 789,621 - PGA1_c07620 0.64 -0.9 789,774 - PGA1_c07620 0.70 -1.1 789,815 + PGA1_c07620 0.71 -0.5 789,823 - PGA1_c07620 0.72 -2.9 789,833 + PGA1_c07620 0.72 -1.1 789,841 - PGA1_c07620 0.72 -1.2 789,854 + PGA1_c07620 0.73 +0.0 789,877 + PGA1_c07620 0.74 -1.1 789,885 - PGA1_c07620 0.74 -2.2 789,885 - PGA1_c07620 0.74 -0.9 789,919 - PGA1_c07620 0.75 -1.1 789,922 + PGA1_c07620 0.75 -2.7 790,065 + PGA1_c07620 0.81 -0.9 790,065 + PGA1_c07620 0.81 -1.5 790,065 + PGA1_c07620 0.81 -1.7 790,104 + PGA1_c07620 0.82 -1.5 790,108 - PGA1_c07620 0.82 -1.2 790,119 - PGA1_c07620 0.83 +0.2 790,190 - PGA1_c07620 0.85 -1.3 790,324 - -1.0 790,542 + +0.7 790,569 + -2.1 790,606 + +0.0 790,614 - -0.7 790,616 + -0.2 790,624 - -1.1 790,624 - +0.7 790,654 + +0.9 790,654 + +0.7 790,654 + +0.5 790,654 + -2.1 790,654 + -0.1 790,662 - -0.5 790,662 - -0.1 790,662 - +0.5 790,662 - +1.6 790,662 - -0.1 790,803 + -0.5 790,808 + -0.7 790,808 + +0.6 790,910 - PGA1_c07630 0.21 +0.6 790,910 - PGA1_c07630 0.21 +0.1 790,939 + PGA1_c07630 0.25 +0.0 790,992 + PGA1_c07630 0.33 -1.0 791,038 + PGA1_c07630 0.39 -1.1 791,067 + PGA1_c07630 0.43 -0.7 791,111 + PGA1_c07630 0.49 -0.6 791,112 + PGA1_c07630 0.50 +0.6 791,242 - PGA1_c07630 0.68 -0.8 791,247 - PGA1_c07630 0.68 -1.1 791,301 + PGA1_c07630 0.76 -0.7 791,309 - PGA1_c07630 0.77 -2.4 791,359 + PGA1_c07630 0.84 -2.8 791,366 + PGA1_c07630 0.85 -0.8 791,372 + PGA1_c07630 0.86 -1.1 791,507 + +1.0 791,514 + +0.5
Or see this region's nucleotide sequence