Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07470

Experiment: Carbon source L-Citrulline 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c07460 and PGA1_c07465 are separated by 294 nucleotidesPGA1_c07465 and PGA1_c07470 are separated by 70 nucleotidesPGA1_c07470 and PGA1_c07480 are separated by 143 nucleotides PGA1_c07460: PGA1_c07460 - glutathione S-transferase domain-containing protein, at 769,600 to 770,214 _c07460 PGA1_c07465: PGA1_c07465 - putative dksA/traR C4-type zinc finger protein, at 770,509 to 770,778 _c07465 PGA1_c07470: PGA1_c07470 - putative oligoendopeptidase, at 770,849 to 772,693 _c07470 PGA1_c07480: PGA1_c07480 - Lysophospholipase, at 772,837 to 773,799 _c07480 Position (kb) 770 771 772 773Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.870 kb on - strand, within PGA1_c07460at 769.872 kb on - strand, within PGA1_c07460at 769.872 kb on - strand, within PGA1_c07460at 769.878 kb on + strand, within PGA1_c07460at 769.878 kb on + strand, within PGA1_c07460at 769.886 kb on + strand, within PGA1_c07460at 769.886 kb on - strand, within PGA1_c07460at 769.947 kb on - strand, within PGA1_c07460at 769.965 kb on - strand, within PGA1_c07460at 769.965 kb on - strand, within PGA1_c07460at 769.992 kb on + strand, within PGA1_c07460at 770.086 kb on - strand, within PGA1_c07460at 770.100 kb on - strand, within PGA1_c07460at 770.100 kb on - strand, within PGA1_c07460at 770.118 kb on + strand, within PGA1_c07460at 770.125 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.260 kb on - strandat 770.328 kb on + strandat 770.396 kb on + strandat 770.410 kb on - strandat 770.481 kb on + strandat 770.482 kb on + strandat 770.482 kb on + strandat 770.489 kb on - strandat 770.490 kb on - strandat 770.519 kb on - strandat 770.550 kb on + strand, within PGA1_c07465at 770.558 kb on - strand, within PGA1_c07465at 770.588 kb on + strand, within PGA1_c07465at 770.591 kb on - strand, within PGA1_c07465at 770.615 kb on + strand, within PGA1_c07465at 770.615 kb on + strand, within PGA1_c07465at 770.693 kb on - strand, within PGA1_c07465at 770.693 kb on - strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.738 kb on + strand, within PGA1_c07465at 770.746 kb on - strand, within PGA1_c07465at 770.746 kb on - strand, within PGA1_c07465at 770.746 kb on - strand, within PGA1_c07465at 770.759 kb on + strandat 770.767 kb on - strandat 770.847 kb on + strandat 770.955 kb on + strandat 770.965 kb on + strandat 771.012 kb on + strandat 771.022 kb on + strandat 771.022 kb on + strandat 771.075 kb on - strand, within PGA1_c07470at 771.117 kb on + strand, within PGA1_c07470at 771.145 kb on + strand, within PGA1_c07470at 771.154 kb on - strand, within PGA1_c07470at 771.180 kb on + strand, within PGA1_c07470at 771.182 kb on + strand, within PGA1_c07470at 771.188 kb on - strand, within PGA1_c07470at 771.188 kb on - strand, within PGA1_c07470at 771.188 kb on - strand, within PGA1_c07470at 771.205 kb on - strand, within PGA1_c07470at 771.301 kb on - strand, within PGA1_c07470at 771.330 kb on + strand, within PGA1_c07470at 771.330 kb on + strand, within PGA1_c07470at 771.330 kb on + strand, within PGA1_c07470at 771.338 kb on - strand, within PGA1_c07470at 771.338 kb on - strand, within PGA1_c07470at 771.338 kb on - strand, within PGA1_c07470at 771.338 kb on - strand, within PGA1_c07470at 771.373 kb on - strand, within PGA1_c07470at 771.383 kb on + strand, within PGA1_c07470at 771.425 kb on + strand, within PGA1_c07470at 771.444 kb on + strand, within PGA1_c07470at 771.478 kb on + strand, within PGA1_c07470at 771.493 kb on - strand, within PGA1_c07470at 771.533 kb on - strand, within PGA1_c07470at 771.533 kb on - strand, within PGA1_c07470at 771.600 kb on + strand, within PGA1_c07470at 771.646 kb on + strand, within PGA1_c07470at 771.654 kb on - strand, within PGA1_c07470at 771.755 kb on + strand, within PGA1_c07470at 771.810 kb on - strand, within PGA1_c07470at 771.810 kb on - strand, within PGA1_c07470at 771.935 kb on - strand, within PGA1_c07470at 771.940 kb on - strand, within PGA1_c07470at 772.030 kb on - strand, within PGA1_c07470at 772.080 kb on + strand, within PGA1_c07470at 772.202 kb on - strand, within PGA1_c07470at 772.256 kb on + strand, within PGA1_c07470at 772.270 kb on + strand, within PGA1_c07470at 772.354 kb on - strand, within PGA1_c07470at 772.411 kb on - strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.447 kb on + strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.455 kb on - strand, within PGA1_c07470at 772.460 kb on - strand, within PGA1_c07470at 772.460 kb on - strand, within PGA1_c07470at 772.462 kb on - strand, within PGA1_c07470at 772.465 kb on - strand, within PGA1_c07470at 772.465 kb on - strand, within PGA1_c07470at 772.530 kb on + strandat 772.615 kb on - strandat 772.625 kb on + strandat 772.644 kb on + strandat 772.646 kb on - strandat 772.718 kb on - strandat 772.749 kb on - strandat 772.792 kb on + strandat 772.815 kb on - strandat 772.817 kb on + strandat 772.817 kb on + strandat 772.819 kb on - strandat 772.909 kb on - strandat 772.937 kb on + strand, within PGA1_c07480at 772.972 kb on + strand, within PGA1_c07480at 773.019 kb on + strand, within PGA1_c07480at 773.024 kb on + strand, within PGA1_c07480at 773.032 kb on - strand, within PGA1_c07480at 773.053 kb on + strand, within PGA1_c07480at 773.078 kb on + strand, within PGA1_c07480at 773.090 kb on - strand, within PGA1_c07480at 773.135 kb on + strand, within PGA1_c07480at 773.135 kb on + strand, within PGA1_c07480at 773.143 kb on - strand, within PGA1_c07480at 773.143 kb on - strand, within PGA1_c07480at 773.161 kb on - strand, within PGA1_c07480at 773.200 kb on + strand, within PGA1_c07480at 773.200 kb on + strand, within PGA1_c07480at 773.298 kb on + strand, within PGA1_c07480at 773.298 kb on + strand, within PGA1_c07480at 773.301 kb on - strand, within PGA1_c07480at 773.301 kb on - strand, within PGA1_c07480at 773.326 kb on - strand, within PGA1_c07480at 773.352 kb on - strand, within PGA1_c07480at 773.352 kb on - strand, within PGA1_c07480at 773.362 kb on - strand, within PGA1_c07480at 773.379 kb on + strand, within PGA1_c07480at 773.382 kb on + strand, within PGA1_c07480at 773.409 kb on + strand, within PGA1_c07480at 773.562 kb on + strand, within PGA1_c07480at 773.582 kb on + strand, within PGA1_c07480at 773.586 kb on + strand, within PGA1_c07480at 773.586 kb on + strand, within PGA1_c07480at 773.587 kb on + strand, within PGA1_c07480at 773.587 kb on + strand, within PGA1_c07480at 773.587 kb on + strand, within PGA1_c07480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
remove
769,864 + PGA1_c07460 0.43 +0.1
769,864 + PGA1_c07460 0.43 -0.1
769,864 + PGA1_c07460 0.43 +0.6
769,864 + PGA1_c07460 0.43 +0.2
769,864 + PGA1_c07460 0.43 -0.6
769,870 - PGA1_c07460 0.44 -0.1
769,872 - PGA1_c07460 0.44 +0.3
769,872 - PGA1_c07460 0.44 +0.3
769,878 + PGA1_c07460 0.45 -0.2
769,878 + PGA1_c07460 0.45 -0.3
769,886 + PGA1_c07460 0.47 +0.2
769,886 - PGA1_c07460 0.47 -1.0
769,947 - PGA1_c07460 0.56 +0.5
769,965 - PGA1_c07460 0.59 -1.9
769,965 - PGA1_c07460 0.59 +0.2
769,992 + PGA1_c07460 0.64 -0.2
770,086 - PGA1_c07460 0.79 -0.0
770,100 - PGA1_c07460 0.81 -0.1
770,100 - PGA1_c07460 0.81 -0.9
770,118 + PGA1_c07460 0.84 +0.9
770,125 + PGA1_c07460 0.85 +1.0
770,135 + PGA1_c07460 0.87 +1.5
770,135 + PGA1_c07460 0.87 -1.4
770,135 + PGA1_c07460 0.87 -0.1
770,135 + PGA1_c07460 0.87 +1.2
770,135 + PGA1_c07460 0.87 -0.3
770,135 + PGA1_c07460 0.87 +0.2
770,135 + PGA1_c07460 0.87 +3.2
770,135 + PGA1_c07460 0.87 -0.2
770,135 + PGA1_c07460 0.87 +1.5
770,135 + PGA1_c07460 0.87 +0.7
770,135 + PGA1_c07460 0.87 -0.9
770,135 + PGA1_c07460 0.87 -0.4
770,135 + PGA1_c07460 0.87 -0.7
770,135 + PGA1_c07460 0.87 +0.7
770,135 + PGA1_c07460 0.87 +0.1
770,135 + PGA1_c07460 0.87 -1.0
770,135 + PGA1_c07460 0.87 -1.3
770,135 + PGA1_c07460 0.87 +0.6
770,135 + PGA1_c07460 0.87 -1.5
770,135 + PGA1_c07460 0.87 +0.5
770,135 + PGA1_c07460 0.87 +1.2
770,143 - PGA1_c07460 0.88 +0.5
770,143 - PGA1_c07460 0.88 -1.6
770,143 - PGA1_c07460 0.88 +0.0
770,143 - PGA1_c07460 0.88 +0.2
770,143 - PGA1_c07460 0.88 +0.5
770,143 - PGA1_c07460 0.88 -0.0
770,143 - PGA1_c07460 0.88 +0.3
770,143 - PGA1_c07460 0.88 -1.6
770,143 - PGA1_c07460 0.88 +0.2
770,143 - PGA1_c07460 0.88 +0.6
770,143 - PGA1_c07460 0.88 -0.0
770,143 - PGA1_c07460 0.88 -0.9
770,143 - PGA1_c07460 0.88 +0.7
770,143 - PGA1_c07460 0.88 +0.3
770,143 - PGA1_c07460 0.88 -1.0
770,143 - PGA1_c07460 0.88 +1.0
770,143 - PGA1_c07460 0.88 -0.0
770,143 - PGA1_c07460 0.88 +0.4
770,143 - PGA1_c07460 0.88 +0.1
770,143 - PGA1_c07460 0.88 +0.5
770,143 - PGA1_c07460 0.88 -1.5
770,143 - PGA1_c07460 0.88 -0.7
770,143 - PGA1_c07460 0.88 +0.1
770,143 - PGA1_c07460 0.88 -1.3
770,143 - PGA1_c07460 0.88 +0.8
770,143 - PGA1_c07460 0.88 +0.4
770,143 - PGA1_c07460 0.88 +0.0
770,143 - PGA1_c07460 0.88 +0.6
770,143 - PGA1_c07460 0.88 +0.5
770,143 - PGA1_c07460 0.88 +0.5
770,143 - PGA1_c07460 0.88 +0.1
770,143 - PGA1_c07460 0.88 +0.5
770,260 - +0.7
770,328 + -1.1
770,396 + -0.5
770,410 - +0.4
770,481 + -1.9
770,482 + -1.5
770,482 + +0.6
770,489 - -1.7
770,490 - +1.1
770,519 - -1.6
770,550 + PGA1_c07465 0.15 -0.9
770,558 - PGA1_c07465 0.18 +0.1
770,588 + PGA1_c07465 0.29 -0.3
770,591 - PGA1_c07465 0.30 -0.3
770,615 + PGA1_c07465 0.39 +0.1
770,615 + PGA1_c07465 0.39 -0.0
770,693 - PGA1_c07465 0.68 +0.5
770,693 - PGA1_c07465 0.68 -0.3
770,738 + PGA1_c07465 0.85 +0.9
770,738 + PGA1_c07465 0.85 +0.6
770,738 + PGA1_c07465 0.85 +0.2
770,738 + PGA1_c07465 0.85 -0.3
770,746 - PGA1_c07465 0.88 -0.2
770,746 - PGA1_c07465 0.88 +0.0
770,746 - PGA1_c07465 0.88 +0.4
770,759 + +0.2
770,767 - -0.0
770,847 + -1.4
770,955 + -1.3
770,965 + +0.9
771,012 + -0.1
771,022 + +0.9
771,022 + +1.5
771,075 - PGA1_c07470 0.12 +1.5
771,117 + PGA1_c07470 0.15 -0.1
771,145 + PGA1_c07470 0.16 +1.5
771,154 - PGA1_c07470 0.17 -1.9
771,180 + PGA1_c07470 0.18 -0.7
771,182 + PGA1_c07470 0.18 +0.5
771,188 - PGA1_c07470 0.18 -0.9
771,188 - PGA1_c07470 0.18 -0.9
771,188 - PGA1_c07470 0.18 +0.5
771,205 - PGA1_c07470 0.19 -0.5
771,301 - PGA1_c07470 0.24 -1.3
771,330 + PGA1_c07470 0.26 -0.9
771,330 + PGA1_c07470 0.26 -0.7
771,330 + PGA1_c07470 0.26 -0.9
771,338 - PGA1_c07470 0.27 -0.9
771,338 - PGA1_c07470 0.27 +3.3
771,338 - PGA1_c07470 0.27 +0.5
771,338 - PGA1_c07470 0.27 -0.7
771,373 - PGA1_c07470 0.28 +0.9
771,383 + PGA1_c07470 0.29 +1.5
771,425 + PGA1_c07470 0.31 +0.7
771,444 + PGA1_c07470 0.32 -1.7
771,478 + PGA1_c07470 0.34 +1.5
771,493 - PGA1_c07470 0.35 -1.1
771,533 - PGA1_c07470 0.37 +0.5
771,533 - PGA1_c07470 0.37 -0.9
771,600 + PGA1_c07470 0.41 -1.7
771,646 + PGA1_c07470 0.43 -1.9
771,654 - PGA1_c07470 0.44 -0.5
771,755 + PGA1_c07470 0.49 +1.5
771,810 - PGA1_c07470 0.52 -0.9
771,810 - PGA1_c07470 0.52 -0.7
771,935 - PGA1_c07470 0.59 -1.3
771,940 - PGA1_c07470 0.59 +1.5
772,030 - PGA1_c07470 0.64 -0.2
772,080 + PGA1_c07470 0.67 +0.1
772,202 - PGA1_c07470 0.73 -1.3
772,256 + PGA1_c07470 0.76 +0.5
772,270 + PGA1_c07470 0.77 +0.5
772,354 - PGA1_c07470 0.82 -0.1
772,411 - PGA1_c07470 0.85 +2.5
772,447 + PGA1_c07470 0.87 +0.5
772,447 + PGA1_c07470 0.87 -0.5
772,447 + PGA1_c07470 0.87 -0.1
772,447 + PGA1_c07470 0.87 +2.5
772,447 + PGA1_c07470 0.87 -0.1
772,447 + PGA1_c07470 0.87 -0.5
772,447 + PGA1_c07470 0.87 +0.1
772,455 - PGA1_c07470 0.87 +0.5
772,455 - PGA1_c07470 0.87 +0.5
772,455 - PGA1_c07470 0.87 -0.5
772,455 - PGA1_c07470 0.87 -1.5
772,455 - PGA1_c07470 0.87 -1.1
772,455 - PGA1_c07470 0.87 -1.1
772,455 - PGA1_c07470 0.87 +1.8
772,455 - PGA1_c07470 0.87 +2.5
772,455 - PGA1_c07470 0.87 +1.1
772,455 - PGA1_c07470 0.87 -0.5
772,455 - PGA1_c07470 0.87 -0.1
772,460 - PGA1_c07470 0.87 -1.3
772,460 - PGA1_c07470 0.87 +1.9
772,462 - PGA1_c07470 0.87 +0.9
772,465 - PGA1_c07470 0.88 -0.5
772,465 - PGA1_c07470 0.88 +0.9
772,530 + +0.9
772,615 - -1.9
772,625 + -1.1
772,644 + -0.5
772,646 - -0.5
772,718 - +1.1
772,749 - +1.5
772,792 + -0.7
772,815 - -0.9
772,817 + -0.1
772,817 + -2.8
772,819 - +0.6
772,909 - +1.5
772,937 + PGA1_c07480 0.10 -1.7
772,972 + PGA1_c07480 0.14 -1.3
773,019 + PGA1_c07480 0.19 -2.0
773,024 + PGA1_c07480 0.19 -0.4
773,032 - PGA1_c07480 0.20 +0.4
773,053 + PGA1_c07480 0.22 -1.1
773,078 + PGA1_c07480 0.25 +0.5
773,090 - PGA1_c07480 0.26 +0.3
773,135 + PGA1_c07480 0.31 +0.5
773,135 + PGA1_c07480 0.31 -0.4
773,143 - PGA1_c07480 0.32 -0.1
773,143 - PGA1_c07480 0.32 +2.1
773,161 - PGA1_c07480 0.34 -0.1
773,200 + PGA1_c07480 0.38 -2.0
773,200 + PGA1_c07480 0.38 -0.3
773,298 + PGA1_c07480 0.48 -1.6
773,298 + PGA1_c07480 0.48 +1.0
773,301 - PGA1_c07480 0.48 -1.1
773,301 - PGA1_c07480 0.48 -0.4
773,326 - PGA1_c07480 0.51 -1.5
773,352 - PGA1_c07480 0.53 +0.1
773,352 - PGA1_c07480 0.53 +0.4
773,362 - PGA1_c07480 0.55 +0.3
773,379 + PGA1_c07480 0.56 -1.7
773,382 + PGA1_c07480 0.57 -0.5
773,409 + PGA1_c07480 0.59 -1.2
773,562 + PGA1_c07480 0.75 -1.0
773,582 + PGA1_c07480 0.77 +0.7
773,586 + PGA1_c07480 0.78 -0.5
773,586 + PGA1_c07480 0.78 -1.4
773,587 + PGA1_c07480 0.78 -2.3
773,587 + PGA1_c07480 0.78 -0.8
773,587 + PGA1_c07480 0.78 -0.1

Or see this region's nucleotide sequence