Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07130

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07110 and PGA1_c07120 are separated by 19 nucleotidesPGA1_c07120 and PGA1_c07130 are separated by 147 nucleotidesPGA1_c07130 and PGA1_c07140 are separated by 4 nucleotides PGA1_c07110: PGA1_c07110 - putative sodium/alanine symporter, at 731,116 to 732,660 _c07110 PGA1_c07120: PGA1_c07120 - putative universal stress protein, at 732,680 to 733,114 _c07120 PGA1_c07130: PGA1_c07130 - putative leucine-responsive regulatory protein, at 733,262 to 733,717 _c07130 PGA1_c07140: PGA1_c07140 - putative methylamine utilization protein MauG, at 733,722 to 734,975 _c07140 Position (kb) 733 734Strain fitness (log2 ratio) -2 -1 0 1at 732.332 kb on + strand, within PGA1_c07110at 732.353 kb on + strand, within PGA1_c07110at 732.358 kb on + strand, within PGA1_c07110at 732.358 kb on + strand, within PGA1_c07110at 732.378 kb on + strand, within PGA1_c07110at 732.400 kb on - strand, within PGA1_c07110at 732.438 kb on + strand, within PGA1_c07110at 732.438 kb on + strand, within PGA1_c07110at 732.628 kb on + strandat 732.653 kb on + strandat 732.655 kb on + strandat 732.685 kb on + strandat 732.685 kb on + strandat 732.703 kb on - strandat 732.711 kb on + strandat 732.818 kb on + strand, within PGA1_c07120at 732.826 kb on - strand, within PGA1_c07120at 732.826 kb on - strand, within PGA1_c07120at 732.828 kb on - strand, within PGA1_c07120at 732.870 kb on - strand, within PGA1_c07120at 732.870 kb on - strand, within PGA1_c07120at 732.897 kb on + strand, within PGA1_c07120at 733.034 kb on - strand, within PGA1_c07120at 733.046 kb on - strand, within PGA1_c07120at 733.121 kb on + strandat 733.123 kb on + strandat 733.128 kb on + strandat 733.131 kb on - strandat 733.356 kb on - strand, within PGA1_c07130at 733.356 kb on - strand, within PGA1_c07130at 733.371 kb on - strand, within PGA1_c07130at 733.435 kb on + strand, within PGA1_c07130at 733.440 kb on + strand, within PGA1_c07130at 733.440 kb on + strand, within PGA1_c07130at 733.448 kb on - strand, within PGA1_c07130at 733.448 kb on - strand, within PGA1_c07130at 733.527 kb on + strand, within PGA1_c07130at 733.527 kb on + strand, within PGA1_c07130at 733.535 kb on - strand, within PGA1_c07130at 733.543 kb on - strand, within PGA1_c07130at 733.596 kb on + strand, within PGA1_c07130at 733.604 kb on - strand, within PGA1_c07130at 733.639 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.669 kb on + strand, within PGA1_c07130at 733.759 kb on + strandat 733.765 kb on + strandat 733.775 kb on - strandat 733.775 kb on - strandat 733.798 kb on + strandat 733.819 kb on - strandat 733.819 kb on - strandat 733.825 kb on - strandat 733.842 kb on - strandat 733.842 kb on - strandat 733.846 kb on - strandat 733.848 kb on + strand, within PGA1_c07140at 733.853 kb on + strand, within PGA1_c07140at 733.853 kb on + strand, within PGA1_c07140at 733.861 kb on - strand, within PGA1_c07140at 733.904 kb on + strand, within PGA1_c07140at 733.934 kb on + strand, within PGA1_c07140at 733.942 kb on - strand, within PGA1_c07140at 733.942 kb on - strand, within PGA1_c07140at 733.949 kb on + strand, within PGA1_c07140at 733.949 kb on + strand, within PGA1_c07140at 733.965 kb on - strand, within PGA1_c07140at 733.994 kb on + strand, within PGA1_c07140at 734.002 kb on - strand, within PGA1_c07140at 734.023 kb on + strand, within PGA1_c07140at 734.127 kb on + strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.169 kb on - strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.191 kb on - strand, within PGA1_c07140at 734.191 kb on - strand, within PGA1_c07140at 734.191 kb on - strand, within PGA1_c07140at 734.206 kb on + strand, within PGA1_c07140at 734.207 kb on - strand, within PGA1_c07140at 734.207 kb on - strand, within PGA1_c07140at 734.210 kb on - strand, within PGA1_c07140at 734.214 kb on - strand, within PGA1_c07140at 734.228 kb on + strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.394 kb on + strand, within PGA1_c07140at 734.394 kb on + strand, within PGA1_c07140at 734.394 kb on + strand, within PGA1_c07140at 734.408 kb on - strand, within PGA1_c07140at 734.443 kb on + strand, within PGA1_c07140at 734.512 kb on + strand, within PGA1_c07140at 734.534 kb on + strand, within PGA1_c07140at 734.542 kb on - strand, within PGA1_c07140at 734.542 kb on - strand, within PGA1_c07140at 734.552 kb on - strand, within PGA1_c07140at 734.554 kb on + strand, within PGA1_c07140at 734.579 kb on + strand, within PGA1_c07140at 734.579 kb on + strand, within PGA1_c07140at 734.587 kb on - strand, within PGA1_c07140at 734.619 kb on + strand, within PGA1_c07140at 734.619 kb on + strand, within PGA1_c07140at 734.619 kb on + strand, within PGA1_c07140at 734.627 kb on - strand, within PGA1_c07140at 734.627 kb on - strand, within PGA1_c07140at 734.644 kb on + strand, within PGA1_c07140at 734.650 kb on + strand, within PGA1_c07140at 734.652 kb on - strand, within PGA1_c07140at 734.657 kb on - strand, within PGA1_c07140at 734.657 kb on - strand, within PGA1_c07140

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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732,332 + PGA1_c07110 0.79 +0.3
732,353 + PGA1_c07110 0.80 -0.6
732,358 + PGA1_c07110 0.80 -0.9
732,358 + PGA1_c07110 0.80 -2.1
732,378 + PGA1_c07110 0.82 -1.5
732,400 - PGA1_c07110 0.83 +1.5
732,438 + PGA1_c07110 0.86 -0.3
732,438 + PGA1_c07110 0.86 -2.4
732,628 + -0.8
732,653 + -1.6
732,655 + -0.9
732,685 + +0.9
732,685 + -1.0
732,703 - +0.1
732,711 + -1.1
732,818 + PGA1_c07120 0.32 -0.1
732,826 - PGA1_c07120 0.34 -0.3
732,826 - PGA1_c07120 0.34 +0.3
732,828 - PGA1_c07120 0.34 +0.2
732,870 - PGA1_c07120 0.44 +0.6
732,870 - PGA1_c07120 0.44 -0.4
732,897 + PGA1_c07120 0.50 -0.6
733,034 - PGA1_c07120 0.81 +0.5
733,046 - PGA1_c07120 0.84 -1.6
733,121 + -0.9
733,123 + -0.5
733,128 + -0.2
733,131 - +0.5
733,356 - PGA1_c07130 0.21 +0.2
733,356 - PGA1_c07130 0.21 +0.3
733,371 - PGA1_c07130 0.24 -0.9
733,435 + PGA1_c07130 0.38 +0.2
733,440 + PGA1_c07130 0.39 +0.7
733,440 + PGA1_c07130 0.39 +1.5
733,448 - PGA1_c07130 0.41 +0.6
733,448 - PGA1_c07130 0.41 -1.0
733,527 + PGA1_c07130 0.58 +1.4
733,527 + PGA1_c07130 0.58 -1.3
733,535 - PGA1_c07130 0.60 -0.7
733,543 - PGA1_c07130 0.62 -0.1
733,596 + PGA1_c07130 0.73 -0.7
733,604 - PGA1_c07130 0.75 -0.2
733,639 + PGA1_c07130 0.83 +0.1
733,657 + PGA1_c07130 0.87 -1.0
733,657 + PGA1_c07130 0.87 +0.9
733,657 + PGA1_c07130 0.87 +0.9
733,657 + PGA1_c07130 0.87 +0.3
733,657 + PGA1_c07130 0.87 -0.6
733,657 + PGA1_c07130 0.87 -0.3
733,657 + PGA1_c07130 0.87 -1.3
733,665 - PGA1_c07130 0.88 +0.2
733,665 - PGA1_c07130 0.88 +0.2
733,665 - PGA1_c07130 0.88 +0.1
733,665 - PGA1_c07130 0.88 -2.1
733,665 - PGA1_c07130 0.88 +0.5
733,669 + PGA1_c07130 0.89 -1.7
733,759 + -0.2
733,765 + -0.4
733,775 - -0.0
733,775 - -0.2
733,798 + +1.1
733,819 - -0.0
733,819 - +1.3
733,825 - -0.1
733,842 - -1.1
733,842 - -0.0
733,846 - -0.1
733,848 + PGA1_c07140 0.10 +0.7
733,853 + PGA1_c07140 0.10 +0.9
733,853 + PGA1_c07140 0.10 +0.7
733,861 - PGA1_c07140 0.11 -1.2
733,904 + PGA1_c07140 0.15 -0.4
733,934 + PGA1_c07140 0.17 -0.4
733,942 - PGA1_c07140 0.18 +0.0
733,942 - PGA1_c07140 0.18 +0.9
733,949 + PGA1_c07140 0.18 -0.5
733,949 + PGA1_c07140 0.18 +0.3
733,965 - PGA1_c07140 0.19 +0.5
733,994 + PGA1_c07140 0.22 +0.1
734,002 - PGA1_c07140 0.22 -2.0
734,023 + PGA1_c07140 0.24 +0.2
734,127 + PGA1_c07140 0.32 +0.5
734,135 - PGA1_c07140 0.33 -0.1
734,135 - PGA1_c07140 0.33 +0.7
734,135 - PGA1_c07140 0.33 -1.2
734,135 - PGA1_c07140 0.33 +0.6
734,169 - PGA1_c07140 0.36 +0.7
734,183 + PGA1_c07140 0.37 +0.2
734,183 + PGA1_c07140 0.37 -1.2
734,183 + PGA1_c07140 0.37 +1.0
734,183 + PGA1_c07140 0.37 +1.3
734,183 + PGA1_c07140 0.37 -0.5
734,191 - PGA1_c07140 0.37 -0.2
734,191 - PGA1_c07140 0.37 -0.1
734,191 - PGA1_c07140 0.37 +0.6
734,206 + PGA1_c07140 0.39 -0.2
734,207 - PGA1_c07140 0.39 -1.3
734,207 - PGA1_c07140 0.39 +0.5
734,210 - PGA1_c07140 0.39 -1.0
734,214 - PGA1_c07140 0.39 +0.2
734,228 + PGA1_c07140 0.40 +0.9
734,236 - PGA1_c07140 0.41 -1.1
734,236 - PGA1_c07140 0.41 -0.0
734,236 - PGA1_c07140 0.41 +0.5
734,236 - PGA1_c07140 0.41 -0.5
734,394 + PGA1_c07140 0.54 -0.1
734,394 + PGA1_c07140 0.54 -0.7
734,394 + PGA1_c07140 0.54 +1.4
734,408 - PGA1_c07140 0.55 +0.7
734,443 + PGA1_c07140 0.57 +0.6
734,512 + PGA1_c07140 0.63 +0.3
734,534 + PGA1_c07140 0.65 -2.5
734,542 - PGA1_c07140 0.65 -1.0
734,542 - PGA1_c07140 0.65 +0.5
734,552 - PGA1_c07140 0.66 +0.1
734,554 + PGA1_c07140 0.66 +0.9
734,579 + PGA1_c07140 0.68 -0.8
734,579 + PGA1_c07140 0.68 -0.4
734,587 - PGA1_c07140 0.69 +0.2
734,619 + PGA1_c07140 0.72 -0.6
734,619 + PGA1_c07140 0.72 -0.1
734,619 + PGA1_c07140 0.72 +0.9
734,627 - PGA1_c07140 0.72 -0.5
734,627 - PGA1_c07140 0.72 +0.5
734,644 + PGA1_c07140 0.74 +1.0
734,650 + PGA1_c07140 0.74 -0.6
734,652 - PGA1_c07140 0.74 -0.6
734,657 - PGA1_c07140 0.75 +0.7
734,657 - PGA1_c07140 0.75 +0.2

Or see this region's nucleotide sequence