Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07110

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07100 and PGA1_c07110 are separated by 53 nucleotidesPGA1_c07110 and PGA1_c07120 are separated by 19 nucleotidesPGA1_c07120 and PGA1_c07130 are separated by 147 nucleotides PGA1_c07100: PGA1_c07100 - RTX toxins and related Ca2+-binding proteins, at 728,705 to 731,062 _c07100 PGA1_c07110: PGA1_c07110 - putative sodium/alanine symporter, at 731,116 to 732,660 _c07110 PGA1_c07120: PGA1_c07120 - putative universal stress protein, at 732,680 to 733,114 _c07120 PGA1_c07130: PGA1_c07130 - putative leucine-responsive regulatory protein, at 733,262 to 733,717 _c07130 Position (kb) 731 732 733Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 730.127 kb on + strand, within PGA1_c07100at 730.135 kb on - strand, within PGA1_c07100at 730.173 kb on - strand, within PGA1_c07100at 730.192 kb on + strand, within PGA1_c07100at 730.219 kb on + strand, within PGA1_c07100at 730.219 kb on + strand, within PGA1_c07100at 730.324 kb on + strand, within PGA1_c07100at 730.332 kb on - strand, within PGA1_c07100at 730.349 kb on + strand, within PGA1_c07100at 730.354 kb on + strand, within PGA1_c07100at 730.357 kb on - strand, within PGA1_c07100at 730.357 kb on - strand, within PGA1_c07100at 730.357 kb on - strand, within PGA1_c07100at 730.357 kb on - strand, within PGA1_c07100at 730.419 kb on + strand, within PGA1_c07100at 730.426 kb on - strand, within PGA1_c07100at 730.452 kb on - strand, within PGA1_c07100at 730.463 kb on - strand, within PGA1_c07100at 730.463 kb on - strand, within PGA1_c07100at 730.478 kb on - strand, within PGA1_c07100at 730.517 kb on - strand, within PGA1_c07100at 730.569 kb on - strand, within PGA1_c07100at 730.623 kb on - strand, within PGA1_c07100at 730.687 kb on + strand, within PGA1_c07100at 730.762 kb on + strand, within PGA1_c07100at 730.826 kb on - strand, within PGA1_c07100at 730.873 kb on + strandat 730.876 kb on - strandat 730.910 kb on - strandat 730.928 kb on + strandat 730.936 kb on - strandat 730.936 kb on - strandat 730.936 kb on - strandat 730.961 kb on + strandat 730.969 kb on - strandat 731.013 kb on + strandat 731.013 kb on + strandat 731.021 kb on - strandat 731.021 kb on - strandat 731.021 kb on - strandat 731.045 kb on - strandat 731.073 kb on + strandat 731.073 kb on + strandat 731.073 kb on + strandat 731.073 kb on + strandat 731.073 kb on - strandat 731.081 kb on - strandat 731.081 kb on - strandat 731.210 kb on + strandat 731.330 kb on - strand, within PGA1_c07110at 731.353 kb on + strand, within PGA1_c07110at 731.353 kb on + strand, within PGA1_c07110at 731.354 kb on + strand, within PGA1_c07110at 731.354 kb on + strand, within PGA1_c07110at 731.354 kb on + strand, within PGA1_c07110at 731.361 kb on - strand, within PGA1_c07110at 731.362 kb on - strand, within PGA1_c07110at 731.362 kb on - strand, within PGA1_c07110at 731.362 kb on - strand, within PGA1_c07110at 731.362 kb on - strand, within PGA1_c07110at 731.362 kb on - strand, within PGA1_c07110at 731.367 kb on + strand, within PGA1_c07110at 731.435 kb on - strand, within PGA1_c07110at 731.480 kb on + strand, within PGA1_c07110at 731.510 kb on + strand, within PGA1_c07110at 731.524 kb on + strand, within PGA1_c07110at 731.586 kb on + strand, within PGA1_c07110at 731.632 kb on - strand, within PGA1_c07110at 731.638 kb on + strand, within PGA1_c07110at 731.869 kb on + strand, within PGA1_c07110at 731.876 kb on + strand, within PGA1_c07110at 731.876 kb on + strand, within PGA1_c07110at 731.884 kb on - strand, within PGA1_c07110at 732.108 kb on + strand, within PGA1_c07110at 732.198 kb on + strand, within PGA1_c07110at 732.206 kb on - strand, within PGA1_c07110at 732.229 kb on + strand, within PGA1_c07110at 732.229 kb on + strand, within PGA1_c07110at 732.229 kb on + strand, within PGA1_c07110at 732.237 kb on - strand, within PGA1_c07110at 732.237 kb on - strand, within PGA1_c07110at 732.332 kb on + strand, within PGA1_c07110at 732.353 kb on + strand, within PGA1_c07110at 732.358 kb on + strand, within PGA1_c07110at 732.358 kb on + strand, within PGA1_c07110at 732.378 kb on + strand, within PGA1_c07110at 732.400 kb on - strand, within PGA1_c07110at 732.438 kb on + strand, within PGA1_c07110at 732.438 kb on + strand, within PGA1_c07110at 732.628 kb on + strandat 732.653 kb on + strandat 732.655 kb on + strandat 732.685 kb on + strandat 732.685 kb on + strandat 732.703 kb on - strandat 732.711 kb on + strandat 732.818 kb on + strand, within PGA1_c07120at 732.826 kb on - strand, within PGA1_c07120at 732.826 kb on - strand, within PGA1_c07120at 732.828 kb on - strand, within PGA1_c07120at 732.870 kb on - strand, within PGA1_c07120at 732.870 kb on - strand, within PGA1_c07120at 732.897 kb on + strand, within PGA1_c07120at 733.034 kb on - strand, within PGA1_c07120at 733.046 kb on - strand, within PGA1_c07120at 733.121 kb on + strandat 733.123 kb on + strandat 733.128 kb on + strandat 733.131 kb on - strandat 733.356 kb on - strand, within PGA1_c07130at 733.356 kb on - strand, within PGA1_c07130at 733.371 kb on - strand, within PGA1_c07130at 733.435 kb on + strand, within PGA1_c07130at 733.440 kb on + strand, within PGA1_c07130at 733.440 kb on + strand, within PGA1_c07130at 733.448 kb on - strand, within PGA1_c07130at 733.448 kb on - strand, within PGA1_c07130at 733.527 kb on + strand, within PGA1_c07130at 733.527 kb on + strand, within PGA1_c07130at 733.535 kb on - strand, within PGA1_c07130at 733.543 kb on - strand, within PGA1_c07130at 733.596 kb on + strand, within PGA1_c07130at 733.604 kb on - strand, within PGA1_c07130at 733.639 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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730,127 + PGA1_c07100 0.60 +0.8
730,135 - PGA1_c07100 0.61 -0.4
730,173 - PGA1_c07100 0.62 +0.1
730,192 + PGA1_c07100 0.63 -1.1
730,219 + PGA1_c07100 0.64 -0.7
730,219 + PGA1_c07100 0.64 -0.2
730,324 + PGA1_c07100 0.69 +0.8
730,332 - PGA1_c07100 0.69 +1.2
730,349 + PGA1_c07100 0.70 -0.5
730,354 + PGA1_c07100 0.70 +0.6
730,357 - PGA1_c07100 0.70 +0.1
730,357 - PGA1_c07100 0.70 +0.2
730,357 - PGA1_c07100 0.70 -0.1
730,357 - PGA1_c07100 0.70 -1.0
730,419 + PGA1_c07100 0.73 -1.7
730,426 - PGA1_c07100 0.73 -0.8
730,452 - PGA1_c07100 0.74 +0.4
730,463 - PGA1_c07100 0.75 +0.2
730,463 - PGA1_c07100 0.75 +1.0
730,478 - PGA1_c07100 0.75 -0.1
730,517 - PGA1_c07100 0.77 +0.8
730,569 - PGA1_c07100 0.79 -0.1
730,623 - PGA1_c07100 0.81 +0.4
730,687 + PGA1_c07100 0.84 -2.3
730,762 + PGA1_c07100 0.87 -0.2
730,826 - PGA1_c07100 0.90 -0.8
730,873 + -0.3
730,876 - -0.1
730,910 - -0.8
730,928 + +1.5
730,936 - -0.3
730,936 - +0.3
730,936 - -0.2
730,961 + -0.1
730,969 - +0.0
731,013 + -0.4
731,013 + +0.1
731,021 - -1.2
731,021 - +1.2
731,021 - +0.6
731,045 - -0.3
731,073 + +0.2
731,073 + -0.2
731,073 + -0.7
731,073 + +0.7
731,073 - +0.6
731,081 - +0.1
731,081 - -0.2
731,210 + +1.5
731,330 - PGA1_c07110 0.14 -1.5
731,353 + PGA1_c07110 0.15 -1.0
731,353 + PGA1_c07110 0.15 -1.0
731,354 + PGA1_c07110 0.15 -2.1
731,354 + PGA1_c07110 0.15 -2.3
731,354 + PGA1_c07110 0.15 +0.2
731,361 - PGA1_c07110 0.16 -0.7
731,362 - PGA1_c07110 0.16 -1.1
731,362 - PGA1_c07110 0.16 -1.0
731,362 - PGA1_c07110 0.16 +1.9
731,362 - PGA1_c07110 0.16 +0.5
731,362 - PGA1_c07110 0.16 -3.0
731,367 + PGA1_c07110 0.16 -0.7
731,435 - PGA1_c07110 0.21 -1.1
731,480 + PGA1_c07110 0.24 -1.1
731,510 + PGA1_c07110 0.26 -1.2
731,524 + PGA1_c07110 0.26 -1.7
731,586 + PGA1_c07110 0.30 -0.5
731,632 - PGA1_c07110 0.33 -3.2
731,638 + PGA1_c07110 0.34 -1.6
731,869 + PGA1_c07110 0.49 -0.3
731,876 + PGA1_c07110 0.49 -0.8
731,876 + PGA1_c07110 0.49 -3.4
731,884 - PGA1_c07110 0.50 -2.0
732,108 + PGA1_c07110 0.64 -0.5
732,198 + PGA1_c07110 0.70 -1.8
732,206 - PGA1_c07110 0.71 -0.7
732,229 + PGA1_c07110 0.72 -0.2
732,229 + PGA1_c07110 0.72 -1.9
732,229 + PGA1_c07110 0.72 +0.5
732,237 - PGA1_c07110 0.73 +0.1
732,237 - PGA1_c07110 0.73 +0.3
732,332 + PGA1_c07110 0.79 +0.3
732,353 + PGA1_c07110 0.80 -0.6
732,358 + PGA1_c07110 0.80 -0.9
732,358 + PGA1_c07110 0.80 -2.1
732,378 + PGA1_c07110 0.82 -1.5
732,400 - PGA1_c07110 0.83 +1.5
732,438 + PGA1_c07110 0.86 -0.3
732,438 + PGA1_c07110 0.86 -2.4
732,628 + -0.8
732,653 + -1.6
732,655 + -0.9
732,685 + +0.9
732,685 + -1.0
732,703 - +0.1
732,711 + -1.1
732,818 + PGA1_c07120 0.32 -0.1
732,826 - PGA1_c07120 0.34 -0.3
732,826 - PGA1_c07120 0.34 +0.3
732,828 - PGA1_c07120 0.34 +0.2
732,870 - PGA1_c07120 0.44 +0.6
732,870 - PGA1_c07120 0.44 -0.4
732,897 + PGA1_c07120 0.50 -0.6
733,034 - PGA1_c07120 0.81 +0.5
733,046 - PGA1_c07120 0.84 -1.6
733,121 + -0.9
733,123 + -0.5
733,128 + -0.2
733,131 - +0.5
733,356 - PGA1_c07130 0.21 +0.2
733,356 - PGA1_c07130 0.21 +0.3
733,371 - PGA1_c07130 0.24 -0.9
733,435 + PGA1_c07130 0.38 +0.2
733,440 + PGA1_c07130 0.39 +0.7
733,440 + PGA1_c07130 0.39 +1.5
733,448 - PGA1_c07130 0.41 +0.6
733,448 - PGA1_c07130 0.41 -1.0
733,527 + PGA1_c07130 0.58 +1.4
733,527 + PGA1_c07130 0.58 -1.3
733,535 - PGA1_c07130 0.60 -0.7
733,543 - PGA1_c07130 0.62 -0.1
733,596 + PGA1_c07130 0.73 -0.7
733,604 - PGA1_c07130 0.75 -0.2
733,639 + PGA1_c07130 0.83 +0.1
733,657 + PGA1_c07130 0.87 -1.0
733,657 + PGA1_c07130 0.87 +0.9
733,657 + PGA1_c07130 0.87 +0.9
733,657 + PGA1_c07130 0.87 +0.3
733,657 + PGA1_c07130 0.87 -0.6
733,657 + PGA1_c07130 0.87 -0.3
733,657 + PGA1_c07130 0.87 -1.3

Or see this region's nucleotide sequence