Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06060

Experiment: Carbon source L-Citrulline 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c06050 and PGA1_c06060 are separated by 183 nucleotidesPGA1_c06060 and PGA1_c06070 are separated by 19 nucleotidesPGA1_c06070 and PGA1_c06080 are separated by 40 nucleotides PGA1_c06050: PGA1_c06050 - hypothetical protein, at 619,355 to 620,662 _c06050 PGA1_c06060: PGA1_c06060 - Flp pilus assembly protein, protease CpaA, at 620,846 to 621,352 _c06060 PGA1_c06070: PGA1_c06070 - hypothetical protein, at 621,372 to 622,220 _c06070 PGA1_c06080: PGA1_c06080 - hypothetical protein, at 622,261 to 622,863 _c06080 Position (kb) 620 621 622Strain fitness (log2 ratio) -2 -1 0 1 2at 619.865 kb on - strand, within PGA1_c06050at 619.912 kb on - strand, within PGA1_c06050at 619.943 kb on - strand, within PGA1_c06050at 620.022 kb on + strand, within PGA1_c06050at 620.066 kb on + strand, within PGA1_c06050at 620.074 kb on - strand, within PGA1_c06050at 620.172 kb on - strand, within PGA1_c06050at 620.202 kb on + strand, within PGA1_c06050at 620.203 kb on + strand, within PGA1_c06050at 620.298 kb on + strand, within PGA1_c06050at 620.306 kb on - strand, within PGA1_c06050at 620.306 kb on - strand, within PGA1_c06050at 620.306 kb on - strand, within PGA1_c06050at 620.306 kb on - strand, within PGA1_c06050at 620.313 kb on + strand, within PGA1_c06050at 620.381 kb on + strand, within PGA1_c06050at 620.381 kb on + strand, within PGA1_c06050at 620.381 kb on + strand, within PGA1_c06050at 620.389 kb on - strand, within PGA1_c06050at 620.389 kb on - strand, within PGA1_c06050at 620.389 kb on - strand, within PGA1_c06050at 620.435 kb on - strand, within PGA1_c06050at 620.437 kb on + strand, within PGA1_c06050at 620.437 kb on + strand, within PGA1_c06050at 620.437 kb on + strand, within PGA1_c06050at 620.445 kb on - strand, within PGA1_c06050at 620.445 kb on - strand, within PGA1_c06050at 620.445 kb on - strand, within PGA1_c06050at 620.485 kb on + strand, within PGA1_c06050at 620.572 kb on + strandat 620.616 kb on - strandat 620.686 kb on + strandat 620.694 kb on - strandat 620.741 kb on + strandat 620.749 kb on - strandat 620.755 kb on + strandat 620.763 kb on - strandat 620.787 kb on + strandat 620.787 kb on + strandat 620.787 kb on + strandat 620.831 kb on - strandat 620.831 kb on - strandat 620.831 kb on - strandat 620.841 kb on - strandat 620.841 kb on - strandat 620.876 kb on + strandat 620.919 kb on - strand, within PGA1_c06060at 620.962 kb on + strand, within PGA1_c06060at 620.979 kb on + strand, within PGA1_c06060at 621.046 kb on - strand, within PGA1_c06060at 621.075 kb on - strand, within PGA1_c06060at 621.103 kb on + strand, within PGA1_c06060at 621.265 kb on - strand, within PGA1_c06060at 621.294 kb on - strand, within PGA1_c06060at 621.494 kb on + strand, within PGA1_c06070at 621.534 kb on - strand, within PGA1_c06070at 621.672 kb on - strand, within PGA1_c06070at 621.674 kb on + strand, within PGA1_c06070at 621.674 kb on + strand, within PGA1_c06070at 621.682 kb on - strand, within PGA1_c06070at 621.725 kb on - strand, within PGA1_c06070at 621.737 kb on + strand, within PGA1_c06070at 621.745 kb on - strand, within PGA1_c06070at 621.745 kb on - strand, within PGA1_c06070at 621.755 kb on - strand, within PGA1_c06070at 621.831 kb on - strand, within PGA1_c06070at 621.844 kb on + strand, within PGA1_c06070at 621.852 kb on - strand, within PGA1_c06070at 621.961 kb on - strand, within PGA1_c06070at 621.966 kb on - strand, within PGA1_c06070at 621.997 kb on + strand, within PGA1_c06070at 622.004 kb on + strand, within PGA1_c06070at 622.005 kb on - strand, within PGA1_c06070at 622.040 kb on + strand, within PGA1_c06070at 622.087 kb on - strand, within PGA1_c06070at 622.155 kb on - strandat 622.172 kb on + strandat 622.230 kb on + strandat 622.235 kb on + strandat 622.245 kb on + strandat 622.253 kb on - strandat 622.253 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
remove
619,865 - PGA1_c06050 0.39 +0.1
619,912 - PGA1_c06050 0.43 +1.0
619,943 - PGA1_c06050 0.45 -1.5
620,022 + PGA1_c06050 0.51 -0.2
620,066 + PGA1_c06050 0.54 -1.5
620,074 - PGA1_c06050 0.55 -0.8
620,172 - PGA1_c06050 0.62 -0.8
620,202 + PGA1_c06050 0.65 +1.3
620,203 + PGA1_c06050 0.65 -0.0
620,298 + PGA1_c06050 0.72 +0.3
620,306 - PGA1_c06050 0.73 +1.0
620,306 - PGA1_c06050 0.73 -0.1
620,306 - PGA1_c06050 0.73 +1.5
620,306 - PGA1_c06050 0.73 +1.3
620,313 + PGA1_c06050 0.73 -0.4
620,381 + PGA1_c06050 0.78 +1.9
620,381 + PGA1_c06050 0.78 -0.3
620,381 + PGA1_c06050 0.78 +0.0
620,389 - PGA1_c06050 0.79 +0.3
620,389 - PGA1_c06050 0.79 +0.7
620,389 - PGA1_c06050 0.79 +0.1
620,435 - PGA1_c06050 0.83 +0.1
620,437 + PGA1_c06050 0.83 +0.3
620,437 + PGA1_c06050 0.83 +1.4
620,437 + PGA1_c06050 0.83 -1.0
620,445 - PGA1_c06050 0.83 -0.6
620,445 - PGA1_c06050 0.83 -0.4
620,445 - PGA1_c06050 0.83 -0.7
620,485 + PGA1_c06050 0.86 +0.5
620,572 + -0.3
620,616 - +0.7
620,686 + -1.9
620,694 - +0.6
620,741 + -0.5
620,749 - +0.3
620,755 + -2.4
620,763 - -0.7
620,787 + +0.3
620,787 + +0.3
620,787 + +1.7
620,831 - +0.3
620,831 - +0.1
620,831 - -0.4
620,841 - +2.3
620,841 - -1.0
620,876 + -0.5
620,919 - PGA1_c06060 0.14 -1.3
620,962 + PGA1_c06060 0.23 +0.5
620,979 + PGA1_c06060 0.26 -0.9
621,046 - PGA1_c06060 0.39 -1.2
621,075 - PGA1_c06060 0.45 -2.0
621,103 + PGA1_c06060 0.51 +0.2
621,265 - PGA1_c06060 0.83 -0.8
621,294 - PGA1_c06060 0.88 -1.5
621,494 + PGA1_c06070 0.14 -1.1
621,534 - PGA1_c06070 0.19 +1.3
621,672 - PGA1_c06070 0.35 -1.7
621,674 + PGA1_c06070 0.36 +0.2
621,674 + PGA1_c06070 0.36 +1.6
621,682 - PGA1_c06070 0.37 -0.1
621,725 - PGA1_c06070 0.42 +0.2
621,737 + PGA1_c06070 0.43 +0.1
621,745 - PGA1_c06070 0.44 +1.1
621,745 - PGA1_c06070 0.44 -0.1
621,755 - PGA1_c06070 0.45 -1.2
621,831 - PGA1_c06070 0.54 -2.0
621,844 + PGA1_c06070 0.56 +0.3
621,852 - PGA1_c06070 0.57 -1.0
621,961 - PGA1_c06070 0.69 -0.5
621,966 - PGA1_c06070 0.70 -0.4
621,997 + PGA1_c06070 0.74 +1.5
622,004 + PGA1_c06070 0.74 -1.8
622,005 - PGA1_c06070 0.75 +0.1
622,040 + PGA1_c06070 0.79 +1.0
622,087 - PGA1_c06070 0.84 +0.5
622,155 - -1.0
622,172 + +1.4
622,230 + +0.7
622,235 + +0.7
622,245 + -1.6
622,253 - -0.8
622,253 - -1.3

Or see this region's nucleotide sequence