Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05820 and PGA1_c05830 are separated by 105 nucleotides PGA1_c05830 and PGA1_c05840 are separated by 206 nucleotides PGA1_c05840 and PGA1_c05850 are separated by 361 nucleotides PGA1_c05850 and PGA1_c05860 overlap by 4 nucleotides
PGA1_c05820: PGA1_c05820 - ribosomal protein L11 methyltransferase PrmA, at 597,200 to 598,072
_c05820
PGA1_c05830: PGA1_c05830 - hypothetical protein, at 598,178 to 598,522
_c05830
PGA1_c05840: PGA1_c05840 - Uncharacterized conserved small protein, at 598,729 to 598,947
_c05840
PGA1_c05850: PGA1_c05850 - crossover junction endodeoxyribonuclease RuvC, at 599,309 to 599,806
_c05850
PGA1_c05860: PGA1_c05860 - holliday junction ATP-dependent DNA helicase RuvA, at 599,803 to 600,492
_c05860
Position (kb) 598
599 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 597.812 kb on - strand, within PGA1_c05820 at 597.828 kb on + strand, within PGA1_c05820 at 597.828 kb on + strand, within PGA1_c05820 at 597.828 kb on + strand, within PGA1_c05820 at 597.832 kb on + strand, within PGA1_c05820 at 597.838 kb on + strand, within PGA1_c05820 at 597.838 kb on + strand, within PGA1_c05820 at 597.846 kb on - strand, within PGA1_c05820 at 597.883 kb on + strand, within PGA1_c05820 at 598.005 kb on + strand at 598.011 kb on + strand at 598.011 kb on + strand at 598.019 kb on - strand at 598.159 kb on + strand at 598.160 kb on - strand at 598.179 kb on + strand at 598.181 kb on + strand at 598.182 kb on - strand at 598.189 kb on - strand at 598.216 kb on - strand, within PGA1_c05830 at 598.236 kb on + strand, within PGA1_c05830 at 598.244 kb on - strand, within PGA1_c05830 at 598.244 kb on - strand, within PGA1_c05830 at 598.249 kb on + strand, within PGA1_c05830 at 598.251 kb on + strand, within PGA1_c05830 at 598.251 kb on + strand, within PGA1_c05830 at 598.257 kb on + strand, within PGA1_c05830 at 598.257 kb on - strand, within PGA1_c05830 at 598.257 kb on - strand, within PGA1_c05830 at 598.280 kb on - strand, within PGA1_c05830 at 598.285 kb on - strand, within PGA1_c05830 at 598.360 kb on + strand, within PGA1_c05830 at 598.360 kb on + strand, within PGA1_c05830 at 598.368 kb on - strand, within PGA1_c05830 at 598.368 kb on - strand, within PGA1_c05830 at 598.369 kb on - strand, within PGA1_c05830 at 598.426 kb on + strand, within PGA1_c05830 at 598.466 kb on - strand, within PGA1_c05830 at 598.494 kb on - strand at 598.506 kb on + strand at 598.509 kb on - strand at 598.509 kb on - strand at 598.509 kb on - strand at 598.514 kb on - strand at 598.576 kb on + strand at 598.586 kb on + strand at 598.586 kb on + strand at 598.594 kb on - strand at 598.594 kb on - strand at 598.594 kb on - strand at 598.594 kb on - strand at 598.605 kb on + strand at 598.613 kb on - strand at 598.633 kb on - strand at 598.680 kb on + strand at 598.712 kb on + strand at 598.739 kb on + strand at 598.774 kb on + strand, within PGA1_c05840 at 598.782 kb on - strand, within PGA1_c05840 at 598.782 kb on - strand, within PGA1_c05840 at 598.787 kb on - strand, within PGA1_c05840 at 598.787 kb on - strand, within PGA1_c05840 at 598.787 kb on - strand, within PGA1_c05840 at 598.943 kb on + strand at 599.009 kb on - strand at 599.103 kb on + strand at 599.111 kb on - strand at 599.144 kb on - strand at 599.291 kb on + strand at 599.296 kb on + strand at 599.304 kb on - strand at 599.309 kb on - strand at 599.309 kb on - strand at 599.357 kb on - strand at 599.562 kb on + strand, within PGA1_c05850 at 599.562 kb on - strand, within PGA1_c05850 at 599.577 kb on + strand, within PGA1_c05850 at 599.759 kb on - strand at 599.784 kb on + strand at 599.812 kb on + strand at 599.894 kb on - strand, within PGA1_c05860 at 599.921 kb on + strand, within PGA1_c05860 at 599.941 kb on + strand, within PGA1_c05860
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 597,812 - PGA1_c05820 0.70 -1.3 597,828 + PGA1_c05820 0.72 -1.3 597,828 + PGA1_c05820 0.72 -2.0 597,828 + PGA1_c05820 0.72 +0.2 597,832 + PGA1_c05820 0.72 -1.7 597,838 + PGA1_c05820 0.73 +0.5 597,838 + PGA1_c05820 0.73 -0.1 597,846 - PGA1_c05820 0.74 -1.1 597,883 + PGA1_c05820 0.78 -1.3 598,005 + -0.1 598,011 + -0.8 598,011 + -0.7 598,019 - +0.2 598,159 + +1.3 598,160 - +1.0 598,179 + +1.3 598,181 + -0.2 598,182 - +0.1 598,189 - +0.3 598,216 - PGA1_c05830 0.11 -1.3 598,236 + PGA1_c05830 0.17 -0.7 598,244 - PGA1_c05830 0.19 -0.2 598,244 - PGA1_c05830 0.19 +0.4 598,249 + PGA1_c05830 0.21 -0.8 598,251 + PGA1_c05830 0.21 +2.1 598,251 + PGA1_c05830 0.21 -2.0 598,257 + PGA1_c05830 0.23 -1.3 598,257 - PGA1_c05830 0.23 +0.3 598,257 - PGA1_c05830 0.23 -0.1 598,280 - PGA1_c05830 0.30 -0.0 598,285 - PGA1_c05830 0.31 -0.5 598,360 + PGA1_c05830 0.53 -0.2 598,360 + PGA1_c05830 0.53 +0.3 598,368 - PGA1_c05830 0.55 +0.3 598,368 - PGA1_c05830 0.55 +0.7 598,369 - PGA1_c05830 0.55 -0.7 598,426 + PGA1_c05830 0.72 -1.1 598,466 - PGA1_c05830 0.83 +1.5 598,494 - +0.5 598,506 + -0.0 598,509 - +0.1 598,509 - -0.0 598,509 - +1.9 598,514 - +0.4 598,576 + -0.2 598,586 + -2.1 598,586 + +0.5 598,594 - -1.5 598,594 - +1.1 598,594 - +0.0 598,594 - -0.4 598,605 + +0.3 598,613 - +0.3 598,633 - -0.2 598,680 + +0.3 598,712 + -0.8 598,739 + +0.6 598,774 + PGA1_c05840 0.21 -1.1 598,782 - PGA1_c05840 0.24 +0.8 598,782 - PGA1_c05840 0.24 -1.8 598,787 - PGA1_c05840 0.26 +0.1 598,787 - PGA1_c05840 0.26 -1.1 598,787 - PGA1_c05840 0.26 -1.0 598,943 + +0.3 599,009 - -0.3 599,103 + -0.1 599,111 - +1.1 599,144 - -2.2 599,291 + -2.3 599,296 + -0.2 599,304 - +0.7 599,309 - -0.5 599,309 - -0.7 599,357 - -1.1 599,562 + PGA1_c05850 0.51 +2.9 599,562 - PGA1_c05850 0.51 -0.8 599,577 + PGA1_c05850 0.54 +0.2 599,759 - -0.8 599,784 + +0.8 599,812 + -0.3 599,894 - PGA1_c05860 0.13 -1.3 599,921 + PGA1_c05860 0.17 +0.1 599,941 + PGA1_c05860 0.20 +1.5
Or see this region's nucleotide sequence