Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04310

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04290 and PGA1_c04300 are separated by 23 nucleotidesPGA1_c04300 and PGA1_c04310 overlap by 19 nucleotidesPGA1_c04310 and PGA1_c04320 are separated by 52 nucleotides PGA1_c04290: PGA1_c04290 - phosphonates transport ATP-binding protein PhnL, at 415,479 to 416,162 _c04290 PGA1_c04300: PGA1_c04300 - putative ATP-binding protein PhnN, at 416,186 to 416,731 _c04300 PGA1_c04310: PGA1_c04310 - Protein of unknown function (DUF1045)., at 416,713 to 417,396 _c04310 PGA1_c04320: PGA1_c04320 - protein PhnM, at 417,449 to 418,591 _c04320 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1 2at 415.767 kb on + strand, within PGA1_c04290at 415.778 kb on - strand, within PGA1_c04290at 415.816 kb on - strand, within PGA1_c04290at 415.852 kb on + strand, within PGA1_c04290at 415.860 kb on - strand, within PGA1_c04290at 415.869 kb on + strand, within PGA1_c04290at 416.002 kb on + strand, within PGA1_c04290at 416.036 kb on - strand, within PGA1_c04290at 416.036 kb on - strand, within PGA1_c04290at 416.062 kb on + strand, within PGA1_c04290at 416.108 kb on + strandat 416.108 kb on + strandat 416.108 kb on + strandat 416.186 kb on - strandat 416.238 kb on + strandat 416.242 kb on + strand, within PGA1_c04300at 416.248 kb on - strand, within PGA1_c04300at 416.304 kb on + strand, within PGA1_c04300at 416.347 kb on + strand, within PGA1_c04300at 416.347 kb on + strand, within PGA1_c04300at 416.355 kb on - strand, within PGA1_c04300at 416.355 kb on - strand, within PGA1_c04300at 416.364 kb on + strand, within PGA1_c04300at 416.372 kb on - strand, within PGA1_c04300at 416.382 kb on - strand, within PGA1_c04300at 416.384 kb on + strand, within PGA1_c04300at 416.384 kb on + strand, within PGA1_c04300at 416.384 kb on + strand, within PGA1_c04300at 416.384 kb on + strand, within PGA1_c04300at 416.384 kb on + strand, within PGA1_c04300at 416.390 kb on + strand, within PGA1_c04300at 416.390 kb on + strand, within PGA1_c04300at 416.390 kb on + strand, within PGA1_c04300at 416.390 kb on + strand, within PGA1_c04300at 416.390 kb on + strand, within PGA1_c04300at 416.392 kb on - strand, within PGA1_c04300at 416.398 kb on - strand, within PGA1_c04300at 416.442 kb on + strand, within PGA1_c04300at 416.445 kb on - strand, within PGA1_c04300at 416.565 kb on + strand, within PGA1_c04300at 416.567 kb on + strand, within PGA1_c04300at 416.573 kb on - strand, within PGA1_c04300at 416.607 kb on + strand, within PGA1_c04300at 416.696 kb on + strandat 417.046 kb on + strand, within PGA1_c04310at 417.054 kb on - strand, within PGA1_c04310at 417.065 kb on - strand, within PGA1_c04310at 417.225 kb on + strand, within PGA1_c04310at 417.390 kb on - strandat 417.402 kb on + strandat 417.405 kb on + strandat 417.434 kb on - strandat 417.458 kb on + strandat 417.458 kb on + strandat 417.458 kb on + strandat 417.480 kb on + strandat 417.488 kb on - strandat 417.488 kb on - strandat 417.488 kb on - strandat 417.488 kb on - strandat 417.488 kb on - strandat 417.488 kb on - strandat 417.488 kb on - strandat 417.552 kb on - strandat 417.576 kb on + strand, within PGA1_c04320at 417.576 kb on + strand, within PGA1_c04320at 417.681 kb on - strand, within PGA1_c04320at 417.735 kb on - strand, within PGA1_c04320at 417.768 kb on - strand, within PGA1_c04320at 417.773 kb on - strand, within PGA1_c04320at 417.890 kb on - strand, within PGA1_c04320at 417.944 kb on - strand, within PGA1_c04320at 418.015 kb on - strand, within PGA1_c04320at 418.031 kb on - strand, within PGA1_c04320at 418.136 kb on + strand, within PGA1_c04320at 418.146 kb on + strand, within PGA1_c04320at 418.218 kb on + strand, within PGA1_c04320at 418.226 kb on - strand, within PGA1_c04320at 418.254 kb on + strand, within PGA1_c04320at 418.254 kb on + strand, within PGA1_c04320at 418.262 kb on - strand, within PGA1_c04320at 418.262 kb on - strand, within PGA1_c04320at 418.275 kb on + strand, within PGA1_c04320at 418.275 kb on + strand, within PGA1_c04320at 418.285 kb on + strand, within PGA1_c04320at 418.293 kb on - strand, within PGA1_c04320at 418.374 kb on - strand, within PGA1_c04320at 418.387 kb on - strand, within PGA1_c04320at 418.387 kb on - strand, within PGA1_c04320

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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415,767 + PGA1_c04290 0.42 -0.2
415,778 - PGA1_c04290 0.44 -0.6
415,816 - PGA1_c04290 0.49 +0.1
415,852 + PGA1_c04290 0.55 +0.4
415,860 - PGA1_c04290 0.56 +2.1
415,869 + PGA1_c04290 0.57 +1.2
416,002 + PGA1_c04290 0.76 -0.5
416,036 - PGA1_c04290 0.81 +0.6
416,036 - PGA1_c04290 0.81 +0.1
416,062 + PGA1_c04290 0.85 +0.1
416,108 + +0.0
416,108 + +1.7
416,108 + +1.7
416,186 - -0.3
416,238 + +0.0
416,242 + PGA1_c04300 0.10 +0.3
416,248 - PGA1_c04300 0.11 -0.8
416,304 + PGA1_c04300 0.22 +1.2
416,347 + PGA1_c04300 0.29 -2.2
416,347 + PGA1_c04300 0.29 +0.7
416,355 - PGA1_c04300 0.31 +0.5
416,355 - PGA1_c04300 0.31 -0.2
416,364 + PGA1_c04300 0.33 +0.2
416,372 - PGA1_c04300 0.34 +0.6
416,382 - PGA1_c04300 0.36 -0.3
416,384 + PGA1_c04300 0.36 +0.8
416,384 + PGA1_c04300 0.36 -1.3
416,384 + PGA1_c04300 0.36 +0.2
416,384 + PGA1_c04300 0.36 +0.2
416,384 + PGA1_c04300 0.36 -0.0
416,390 + PGA1_c04300 0.37 +0.2
416,390 + PGA1_c04300 0.37 +0.8
416,390 + PGA1_c04300 0.37 +0.1
416,390 + PGA1_c04300 0.37 +0.5
416,390 + PGA1_c04300 0.37 -1.5
416,392 - PGA1_c04300 0.38 -0.4
416,398 - PGA1_c04300 0.39 -0.7
416,442 + PGA1_c04300 0.47 +1.1
416,445 - PGA1_c04300 0.47 -0.5
416,565 + PGA1_c04300 0.69 +0.0
416,567 + PGA1_c04300 0.70 -0.1
416,573 - PGA1_c04300 0.71 -0.9
416,607 + PGA1_c04300 0.77 +0.2
416,696 + -0.4
417,046 + PGA1_c04310 0.49 +0.3
417,054 - PGA1_c04310 0.50 -2.3
417,065 - PGA1_c04310 0.51 -1.8
417,225 + PGA1_c04310 0.75 -0.7
417,390 - +0.3
417,402 + +0.9
417,405 + +0.1
417,434 - -2.0
417,458 + -1.7
417,458 + +0.4
417,458 + -0.9
417,480 + +0.3
417,488 - -1.3
417,488 - -0.3
417,488 - +1.2
417,488 - +0.3
417,488 - -0.8
417,488 - +1.1
417,488 - +0.2
417,552 - +1.1
417,576 + PGA1_c04320 0.11 -1.0
417,576 + PGA1_c04320 0.11 +0.4
417,681 - PGA1_c04320 0.20 -0.3
417,735 - PGA1_c04320 0.25 +0.7
417,768 - PGA1_c04320 0.28 -0.5
417,773 - PGA1_c04320 0.28 +0.1
417,890 - PGA1_c04320 0.39 -0.5
417,944 - PGA1_c04320 0.43 +0.5
418,015 - PGA1_c04320 0.50 -0.5
418,031 - PGA1_c04320 0.51 +0.5
418,136 + PGA1_c04320 0.60 +0.2
418,146 + PGA1_c04320 0.61 -0.8
418,218 + PGA1_c04320 0.67 +0.7
418,226 - PGA1_c04320 0.68 +0.7
418,254 + PGA1_c04320 0.70 -2.0
418,254 + PGA1_c04320 0.70 +0.9
418,262 - PGA1_c04320 0.71 +0.0
418,262 - PGA1_c04320 0.71 -0.0
418,275 + PGA1_c04320 0.72 +0.6
418,275 + PGA1_c04320 0.72 -0.3
418,285 + PGA1_c04320 0.73 +0.2
418,293 - PGA1_c04320 0.74 -0.1
418,374 - PGA1_c04320 0.81 -0.4
418,387 - PGA1_c04320 0.82 -0.6
418,387 - PGA1_c04320 0.82 +0.4

Or see this region's nucleotide sequence