Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c32440 and PGA1_c32450 are separated by 244 nucleotides PGA1_c32450 and PGA1_c32460 are separated by 496 nucleotides
PGA1_c32440: PGA1_c32440 - chaperone protein ClpB, at 3,399,959 to 3,402,658
_c32440
PGA1_c32450: PGA1_c32450 - orotidine 5'-phosphate decarboxylase PyrF, at 3,402,903 to 3,403,634
_c32450
PGA1_c32460: PGA1_c32460 - putative NUDIX hydrolase, at 3,404,131 to 3,404,547
_c32460
Position (kb)
3402
3403
3404 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3401.919 kb on + strand, within PGA1_c32440 at 3401.927 kb on - strand, within PGA1_c32440 at 3401.927 kb on - strand, within PGA1_c32440 at 3401.978 kb on + strand, within PGA1_c32440 at 3401.993 kb on + strand, within PGA1_c32440 at 3402.001 kb on - strand, within PGA1_c32440 at 3402.004 kb on + strand, within PGA1_c32440 at 3402.074 kb on - strand, within PGA1_c32440 at 3402.183 kb on + strand, within PGA1_c32440 at 3402.213 kb on + strand, within PGA1_c32440 at 3402.215 kb on - strand, within PGA1_c32440 at 3402.225 kb on + strand, within PGA1_c32440 at 3402.257 kb on - strand, within PGA1_c32440 at 3402.267 kb on - strand, within PGA1_c32440 at 3402.310 kb on + strand, within PGA1_c32440 at 3402.318 kb on - strand, within PGA1_c32440 at 3402.318 kb on - strand, within PGA1_c32440 at 3402.348 kb on - strand, within PGA1_c32440 at 3402.365 kb on - strand, within PGA1_c32440 at 3402.469 kb on - strand at 3402.504 kb on + strand at 3402.521 kb on + strand at 3402.521 kb on + strand at 3402.521 kb on + strand at 3402.594 kb on - strand at 3402.596 kb on + strand at 3402.597 kb on - strand at 3402.638 kb on + strand at 3402.646 kb on - strand at 3402.646 kb on - strand at 3402.660 kb on - strand at 3402.679 kb on + strand at 3402.685 kb on - strand at 3402.725 kb on + strand at 3402.725 kb on + strand at 3402.725 kb on + strand at 3402.725 kb on + strand at 3402.733 kb on - strand at 3402.733 kb on - strand at 3402.733 kb on - strand at 3402.733 kb on - strand at 3402.733 kb on - strand at 3402.761 kb on - strand at 3402.763 kb on + strand at 3402.808 kb on + strand at 3402.834 kb on - strand at 3402.860 kb on - strand at 3402.867 kb on - strand at 3402.867 kb on - strand at 3402.867 kb on - strand at 3402.867 kb on - strand at 3402.867 kb on - strand at 3402.871 kb on + strand at 3402.882 kb on + strand at 3402.890 kb on - strand at 3402.897 kb on + strand at 3402.927 kb on - strand at 3403.044 kb on + strand, within PGA1_c32450 at 3403.068 kb on + strand, within PGA1_c32450 at 3403.076 kb on - strand, within PGA1_c32450 at 3403.077 kb on - strand, within PGA1_c32450 at 3403.123 kb on + strand, within PGA1_c32450 at 3403.171 kb on + strand, within PGA1_c32450 at 3403.283 kb on + strand, within PGA1_c32450 at 3403.288 kb on + strand, within PGA1_c32450 at 3403.289 kb on - strand, within PGA1_c32450 at 3403.289 kb on - strand, within PGA1_c32450 at 3403.298 kb on - strand, within PGA1_c32450 at 3403.330 kb on - strand, within PGA1_c32450 at 3403.347 kb on - strand, within PGA1_c32450 at 3403.358 kb on - strand, within PGA1_c32450 at 3403.444 kb on - strand, within PGA1_c32450 at 3403.463 kb on + strand, within PGA1_c32450 at 3403.473 kb on - strand, within PGA1_c32450 at 3403.481 kb on + strand, within PGA1_c32450 at 3403.543 kb on + strand, within PGA1_c32450 at 3403.602 kb on + strand at 3403.606 kb on + strand at 3403.620 kb on + strand at 3403.651 kb on + strand at 3403.651 kb on + strand at 3403.678 kb on + strand at 3403.678 kb on + strand at 3403.686 kb on + strand at 3403.694 kb on - strand at 3403.733 kb on + strand at 3403.748 kb on - strand at 3403.821 kb on + strand at 3403.823 kb on - strand at 3403.837 kb on + strand at 3403.855 kb on - strand at 3403.865 kb on - strand at 3403.865 kb on - strand at 3403.914 kb on + strand at 3403.922 kb on - strand at 3403.922 kb on - strand at 3403.932 kb on - strand at 3403.958 kb on + strand at 3404.008 kb on + strand at 3404.016 kb on - strand at 3404.016 kb on - strand at 3404.016 kb on - strand at 3404.016 kb on - strand at 3404.016 kb on - strand at 3404.016 kb on - strand at 3404.030 kb on - strand at 3404.039 kb on - strand at 3404.068 kb on + strand at 3404.167 kb on - strand at 3404.167 kb on - strand at 3404.230 kb on - strand, within PGA1_c32460 at 3404.239 kb on + strand, within PGA1_c32460 at 3404.247 kb on - strand, within PGA1_c32460 at 3404.247 kb on - strand, within PGA1_c32460 at 3404.247 kb on - strand, within PGA1_c32460 at 3404.315 kb on + strand, within PGA1_c32460 at 3404.315 kb on + strand, within PGA1_c32460 at 3404.315 kb on + strand, within PGA1_c32460 at 3404.323 kb on - strand, within PGA1_c32460 at 3404.323 kb on - strand, within PGA1_c32460 at 3404.323 kb on - strand, within PGA1_c32460 at 3404.323 kb on - strand, within PGA1_c32460 at 3404.395 kb on - strand, within PGA1_c32460 at 3404.397 kb on + strand, within PGA1_c32460 at 3404.397 kb on + strand, within PGA1_c32460 at 3404.397 kb on + strand, within PGA1_c32460 at 3404.397 kb on + strand, within PGA1_c32460 at 3404.397 kb on + strand, within PGA1_c32460 at 3404.405 kb on - strand, within PGA1_c32460 at 3404.405 kb on - strand, within PGA1_c32460 at 3404.405 kb on - strand, within PGA1_c32460 at 3404.405 kb on - strand, within PGA1_c32460 at 3404.480 kb on + strand, within PGA1_c32460 at 3404.480 kb on + strand, within PGA1_c32460 at 3404.502 kb on + strand, within PGA1_c32460 at 3404.526 kb on + strand at 3404.552 kb on + strand at 3404.555 kb on - strand at 3404.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 3,401,919 + PGA1_c32440 0.73 +1.5 3,401,927 - PGA1_c32440 0.73 +0.4 3,401,927 - PGA1_c32440 0.73 +0.4 3,401,978 + PGA1_c32440 0.75 -0.5 3,401,993 + PGA1_c32440 0.75 +0.1 3,402,001 - PGA1_c32440 0.76 -0.4 3,402,004 + PGA1_c32440 0.76 -0.1 3,402,074 - PGA1_c32440 0.78 -0.2 3,402,183 + PGA1_c32440 0.82 +1.5 3,402,213 + PGA1_c32440 0.83 -0.3 3,402,215 - PGA1_c32440 0.84 -1.3 3,402,225 + PGA1_c32440 0.84 +0.9 3,402,257 - PGA1_c32440 0.85 -1.4 3,402,267 - PGA1_c32440 0.85 -0.3 3,402,310 + PGA1_c32440 0.87 -0.8 3,402,318 - PGA1_c32440 0.87 +0.6 3,402,318 - PGA1_c32440 0.87 -3.1 3,402,348 - PGA1_c32440 0.88 +0.1 3,402,365 - PGA1_c32440 0.89 -1.2 3,402,469 - +0.1 3,402,504 + -1.4 3,402,521 + +0.2 3,402,521 + -0.9 3,402,521 + +0.9 3,402,594 - +0.1 3,402,596 + -0.9 3,402,597 - -0.5 3,402,638 + -0.2 3,402,646 - +0.5 3,402,646 - +0.8 3,402,660 - -0.9 3,402,679 + -0.5 3,402,685 - -1.0 3,402,725 + +1.1 3,402,725 + -1.3 3,402,725 + +1.5 3,402,725 + +0.9 3,402,733 - +0.5 3,402,733 - +1.2 3,402,733 - +0.2 3,402,733 - +0.1 3,402,733 - -0.5 3,402,761 - -0.3 3,402,763 + -1.5 3,402,808 + -0.5 3,402,834 - +1.1 3,402,860 - +0.7 3,402,867 - +0.7 3,402,867 - +1.5 3,402,867 - +0.1 3,402,867 - -0.4 3,402,867 - -0.3 3,402,871 + +0.5 3,402,882 + +1.2 3,402,890 - +1.2 3,402,897 + -0.5 3,402,927 - -1.0 3,403,044 + PGA1_c32450 0.19 -2.0 3,403,068 + PGA1_c32450 0.23 -1.7 3,403,076 - PGA1_c32450 0.24 -2.5 3,403,077 - PGA1_c32450 0.24 -1.6 3,403,123 + PGA1_c32450 0.30 -2.7 3,403,171 + PGA1_c32450 0.37 -2.4 3,403,283 + PGA1_c32450 0.52 -2.6 3,403,288 + PGA1_c32450 0.53 -1.2 3,403,289 - PGA1_c32450 0.53 -1.4 3,403,289 - PGA1_c32450 0.53 -1.9 3,403,298 - PGA1_c32450 0.54 -3.3 3,403,330 - PGA1_c32450 0.58 -1.7 3,403,347 - PGA1_c32450 0.61 -3.3 3,403,358 - PGA1_c32450 0.62 -1.8 3,403,444 - PGA1_c32450 0.74 -0.5 3,403,463 + PGA1_c32450 0.77 -0.9 3,403,473 - PGA1_c32450 0.78 -1.1 3,403,481 + PGA1_c32450 0.79 -1.7 3,403,543 + PGA1_c32450 0.87 -1.9 3,403,602 + -2.5 3,403,606 + -1.0 3,403,620 + -2.3 3,403,651 + -0.7 3,403,651 + -0.4 3,403,678 + +0.4 3,403,678 + -0.3 3,403,686 + +2.5 3,403,694 - -0.3 3,403,733 + +0.1 3,403,748 - +0.1 3,403,821 + -0.1 3,403,823 - +0.8 3,403,837 + +0.2 3,403,855 - -0.4 3,403,865 - +1.4 3,403,865 - +0.5 3,403,914 + +1.5 3,403,922 - +0.5 3,403,922 - +0.1 3,403,932 - +0.2 3,403,958 + +0.0 3,404,008 + -1.7 3,404,016 - +0.1 3,404,016 - -0.0 3,404,016 - +1.1 3,404,016 - +0.6 3,404,016 - +0.4 3,404,016 - +1.1 3,404,030 - +0.1 3,404,039 - -0.9 3,404,068 + +0.1 3,404,167 - +0.8 3,404,167 - +0.6 3,404,230 - PGA1_c32460 0.24 -0.1 3,404,239 + PGA1_c32460 0.26 -1.0 3,404,247 - PGA1_c32460 0.28 +0.8 3,404,247 - PGA1_c32460 0.28 -0.4 3,404,247 - PGA1_c32460 0.28 +1.3 3,404,315 + PGA1_c32460 0.44 -0.1 3,404,315 + PGA1_c32460 0.44 -0.5 3,404,315 + PGA1_c32460 0.44 -0.2 3,404,323 - PGA1_c32460 0.46 +0.5 3,404,323 - PGA1_c32460 0.46 +0.7 3,404,323 - PGA1_c32460 0.46 -0.2 3,404,323 - PGA1_c32460 0.46 +0.6 3,404,395 - PGA1_c32460 0.63 +1.7 3,404,397 + PGA1_c32460 0.64 +0.5 3,404,397 + PGA1_c32460 0.64 -0.6 3,404,397 + PGA1_c32460 0.64 +1.1 3,404,397 + PGA1_c32460 0.64 -0.1 3,404,397 + PGA1_c32460 0.64 +0.5 3,404,405 - PGA1_c32460 0.66 -1.3 3,404,405 - PGA1_c32460 0.66 -2.6 3,404,405 - PGA1_c32460 0.66 +0.6 3,404,405 - PGA1_c32460 0.66 -0.6 3,404,480 + PGA1_c32460 0.84 -0.4 3,404,480 + PGA1_c32460 0.84 +0.4 3,404,502 + PGA1_c32460 0.89 -1.1 3,404,526 + -0.1 3,404,552 + +0.4 3,404,555 - +1.1 3,404,578 + -0.5
Or see this region's nucleotide sequence