Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31760

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c31750 and PGA1_c31760 are separated by 71 nucleotidesPGA1_c31760 and PGA1_c31770 are separated by 208 nucleotides PGA1_c31750: PGA1_c31750 - ABC transporter, ATP-binding protein, at 3,317,589 to 3,318,521 _c31750 PGA1_c31760: PGA1_c31760 - Uncharacterized protein conserved in bacteria, at 3,318,593 to 3,318,775 _c31760 PGA1_c31770: PGA1_c31770 - putative signaling protein with diguanylate cyclase/phosphodiesterase activity, at 3,318,984 to 3,321,038 _c31770 Position (kb) 3318 3319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3317.593 kb on - strandat 3317.644 kb on + strandat 3317.651 kb on - strandat 3317.652 kb on - strandat 3317.652 kb on - strandat 3317.741 kb on - strand, within PGA1_c31750at 3317.753 kb on + strand, within PGA1_c31750at 3317.753 kb on + strand, within PGA1_c31750at 3317.761 kb on - strand, within PGA1_c31750at 3317.761 kb on - strand, within PGA1_c31750at 3317.812 kb on + strand, within PGA1_c31750at 3317.812 kb on + strand, within PGA1_c31750at 3317.812 kb on + strand, within PGA1_c31750at 3317.812 kb on + strand, within PGA1_c31750at 3317.820 kb on - strand, within PGA1_c31750at 3317.877 kb on - strand, within PGA1_c31750at 3317.877 kb on - strand, within PGA1_c31750at 3317.918 kb on + strand, within PGA1_c31750at 3317.926 kb on - strand, within PGA1_c31750at 3317.932 kb on - strand, within PGA1_c31750at 3317.945 kb on + strand, within PGA1_c31750at 3317.955 kb on - strand, within PGA1_c31750at 3318.048 kb on - strand, within PGA1_c31750at 3318.066 kb on + strand, within PGA1_c31750at 3318.111 kb on - strand, within PGA1_c31750at 3318.268 kb on - strand, within PGA1_c31750at 3318.307 kb on + strand, within PGA1_c31750at 3318.331 kb on + strand, within PGA1_c31750at 3318.338 kb on + strand, within PGA1_c31750at 3318.338 kb on + strand, within PGA1_c31750at 3318.351 kb on - strand, within PGA1_c31750at 3318.423 kb on + strand, within PGA1_c31750at 3318.428 kb on + strandat 3318.428 kb on + strandat 3318.431 kb on - strandat 3318.436 kb on + strandat 3318.436 kb on - strandat 3318.521 kb on + strandat 3318.582 kb on - strandat 3318.701 kb on + strand, within PGA1_c31760at 3318.709 kb on - strand, within PGA1_c31760at 3318.709 kb on - strand, within PGA1_c31760at 3318.721 kb on + strand, within PGA1_c31760at 3318.729 kb on - strand, within PGA1_c31760at 3318.844 kb on + strandat 3318.844 kb on + strandat 3318.846 kb on + strandat 3318.846 kb on - strandat 3318.854 kb on - strandat 3318.891 kb on + strandat 3318.891 kb on + strandat 3318.891 kb on + strandat 3318.891 kb on + strandat 3318.899 kb on - strandat 3318.899 kb on - strandat 3318.899 kb on - strandat 3318.899 kb on - strandat 3318.906 kb on + strandat 3318.911 kb on + strandat 3318.919 kb on - strandat 3318.919 kb on - strandat 3318.919 kb on - strandat 3318.986 kb on + strandat 3318.986 kb on + strandat 3318.986 kb on + strandat 3318.989 kb on - strandat 3318.989 kb on - strandat 3318.994 kb on - strandat 3318.999 kb on - strandat 3319.004 kb on - strandat 3319.004 kb on - strandat 3319.019 kb on - strandat 3319.029 kb on - strandat 3319.063 kb on + strandat 3319.063 kb on + strandat 3319.085 kb on - strandat 3319.129 kb on + strandat 3319.134 kb on + strandat 3319.143 kb on + strandat 3319.184 kb on - strandat 3319.195 kb on + strand, within PGA1_c31770at 3319.220 kb on + strand, within PGA1_c31770at 3319.220 kb on + strand, within PGA1_c31770at 3319.227 kb on - strand, within PGA1_c31770at 3319.233 kb on - strand, within PGA1_c31770at 3319.238 kb on - strand, within PGA1_c31770at 3319.248 kb on - strand, within PGA1_c31770at 3319.294 kb on + strand, within PGA1_c31770at 3319.359 kb on + strand, within PGA1_c31770at 3319.367 kb on - strand, within PGA1_c31770at 3319.371 kb on + strand, within PGA1_c31770at 3319.447 kb on + strand, within PGA1_c31770at 3319.447 kb on + strand, within PGA1_c31770at 3319.447 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.452 kb on + strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.455 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.460 kb on - strand, within PGA1_c31770at 3319.497 kb on - strand, within PGA1_c31770at 3319.502 kb on + strand, within PGA1_c31770at 3319.510 kb on - strand, within PGA1_c31770at 3319.510 kb on - strand, within PGA1_c31770at 3319.510 kb on - strand, within PGA1_c31770at 3319.521 kb on + strand, within PGA1_c31770at 3319.529 kb on - strand, within PGA1_c31770at 3319.529 kb on - strand, within PGA1_c31770at 3319.578 kb on + strand, within PGA1_c31770at 3319.578 kb on + strand, within PGA1_c31770at 3319.583 kb on + strand, within PGA1_c31770at 3319.583 kb on + strand, within PGA1_c31770at 3319.583 kb on + strand, within PGA1_c31770at 3319.586 kb on - strand, within PGA1_c31770at 3319.586 kb on - strand, within PGA1_c31770at 3319.586 kb on - strand, within PGA1_c31770at 3319.588 kb on + strand, within PGA1_c31770at 3319.591 kb on - strand, within PGA1_c31770at 3319.591 kb on - strand, within PGA1_c31770at 3319.591 kb on - strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.592 kb on + strand, within PGA1_c31770at 3319.597 kb on + strand, within PGA1_c31770at 3319.597 kb on + strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.600 kb on - strand, within PGA1_c31770at 3319.605 kb on - strand, within PGA1_c31770at 3319.605 kb on - strand, within PGA1_c31770at 3319.605 kb on - strand, within PGA1_c31770at 3319.605 kb on - strand, within PGA1_c31770at 3319.648 kb on - strand, within PGA1_c31770at 3319.648 kb on - strand, within PGA1_c31770at 3319.668 kb on - strand, within PGA1_c31770at 3319.686 kb on + strand, within PGA1_c31770at 3319.686 kb on - strand, within PGA1_c31770at 3319.694 kb on - strand, within PGA1_c31770at 3319.704 kb on + strand, within PGA1_c31770at 3319.712 kb on - strand, within PGA1_c31770at 3319.741 kb on - strand, within PGA1_c31770at 3319.755 kb on + strand, within PGA1_c31770

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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3,317,593 - +1.6
3,317,644 + +0.8
3,317,651 - -1.5
3,317,652 - +0.7
3,317,652 - +0.5
3,317,741 - PGA1_c31750 0.16 -0.9
3,317,753 + PGA1_c31750 0.18 +0.9
3,317,753 + PGA1_c31750 0.18 +0.1
3,317,761 - PGA1_c31750 0.18 -0.3
3,317,761 - PGA1_c31750 0.18 +1.2
3,317,812 + PGA1_c31750 0.24 -0.0
3,317,812 + PGA1_c31750 0.24 +1.1
3,317,812 + PGA1_c31750 0.24 -0.7
3,317,812 + PGA1_c31750 0.24 +1.8
3,317,820 - PGA1_c31750 0.25 +0.4
3,317,877 - PGA1_c31750 0.31 +1.1
3,317,877 - PGA1_c31750 0.31 -0.1
3,317,918 + PGA1_c31750 0.35 -0.4
3,317,926 - PGA1_c31750 0.36 +1.5
3,317,932 - PGA1_c31750 0.37 -0.9
3,317,945 + PGA1_c31750 0.38 +0.6
3,317,955 - PGA1_c31750 0.39 +0.6
3,318,048 - PGA1_c31750 0.49 -0.1
3,318,066 + PGA1_c31750 0.51 -0.1
3,318,111 - PGA1_c31750 0.56 -1.0
3,318,268 - PGA1_c31750 0.73 -0.3
3,318,307 + PGA1_c31750 0.77 +0.3
3,318,331 + PGA1_c31750 0.80 -0.5
3,318,338 + PGA1_c31750 0.80 +0.6
3,318,338 + PGA1_c31750 0.80 +0.5
3,318,351 - PGA1_c31750 0.82 +1.2
3,318,423 + PGA1_c31750 0.89 +0.6
3,318,428 + +0.7
3,318,428 + -0.5
3,318,431 - -0.1
3,318,436 + -0.3
3,318,436 - -0.7
3,318,521 + +0.0
3,318,582 - +0.8
3,318,701 + PGA1_c31760 0.59 -2.7
3,318,709 - PGA1_c31760 0.63 -0.8
3,318,709 - PGA1_c31760 0.63 -2.5
3,318,721 + PGA1_c31760 0.70 -1.9
3,318,729 - PGA1_c31760 0.74 +1.0
3,318,844 + -1.5
3,318,844 + -2.0
3,318,846 + +0.5
3,318,846 - +0.9
3,318,854 - -0.3
3,318,891 + +0.6
3,318,891 + +1.2
3,318,891 + -0.4
3,318,891 + -0.2
3,318,899 - -0.7
3,318,899 - +0.1
3,318,899 - -1.3
3,318,899 - +0.3
3,318,906 + -1.4
3,318,911 + +0.2
3,318,919 - +1.2
3,318,919 - +0.0
3,318,919 - -1.4
3,318,986 + -1.1
3,318,986 + +1.2
3,318,986 + +0.3
3,318,989 - -2.4
3,318,989 - +0.6
3,318,994 - -0.2
3,318,999 - +0.5
3,319,004 - +2.0
3,319,004 - -0.7
3,319,019 - -0.0
3,319,029 - +1.5
3,319,063 + -0.1
3,319,063 + -0.9
3,319,085 - -1.0
3,319,129 + -0.5
3,319,134 + +0.3
3,319,143 + +1.0
3,319,184 - +0.5
3,319,195 + PGA1_c31770 0.10 -1.7
3,319,220 + PGA1_c31770 0.11 -1.2
3,319,220 + PGA1_c31770 0.11 +0.2
3,319,227 - PGA1_c31770 0.12 +0.3
3,319,233 - PGA1_c31770 0.12 -0.9
3,319,238 - PGA1_c31770 0.12 -0.1
3,319,248 - PGA1_c31770 0.13 +0.5
3,319,294 + PGA1_c31770 0.15 +1.1
3,319,359 + PGA1_c31770 0.18 -2.8
3,319,367 - PGA1_c31770 0.19 +0.6
3,319,371 + PGA1_c31770 0.19 -0.2
3,319,447 + PGA1_c31770 0.23 +0.4
3,319,447 + PGA1_c31770 0.23 +1.3
3,319,447 + PGA1_c31770 0.23 +0.8
3,319,452 + PGA1_c31770 0.23 -0.9
3,319,452 + PGA1_c31770 0.23 -1.6
3,319,452 + PGA1_c31770 0.23 +1.2
3,319,452 + PGA1_c31770 0.23 +0.2
3,319,452 + PGA1_c31770 0.23 +0.2
3,319,452 + PGA1_c31770 0.23 +0.3
3,319,452 + PGA1_c31770 0.23 -0.6
3,319,455 - PGA1_c31770 0.23 +0.7
3,319,455 - PGA1_c31770 0.23 -2.4
3,319,455 - PGA1_c31770 0.23 -0.8
3,319,455 - PGA1_c31770 0.23 -0.2
3,319,455 - PGA1_c31770 0.23 -0.4
3,319,455 - PGA1_c31770 0.23 +0.6
3,319,460 - PGA1_c31770 0.23 +0.1
3,319,460 - PGA1_c31770 0.23 -0.1
3,319,460 - PGA1_c31770 0.23 -0.1
3,319,460 - PGA1_c31770 0.23 +0.0
3,319,460 - PGA1_c31770 0.23 -0.1
3,319,460 - PGA1_c31770 0.23 +0.5
3,319,497 - PGA1_c31770 0.25 -1.0
3,319,502 + PGA1_c31770 0.25 +0.5
3,319,510 - PGA1_c31770 0.26 -0.1
3,319,510 - PGA1_c31770 0.26 +0.9
3,319,510 - PGA1_c31770 0.26 +0.5
3,319,521 + PGA1_c31770 0.26 +0.3
3,319,529 - PGA1_c31770 0.27 -0.4
3,319,529 - PGA1_c31770 0.27 +0.2
3,319,578 + PGA1_c31770 0.29 -0.4
3,319,578 + PGA1_c31770 0.29 -0.1
3,319,583 + PGA1_c31770 0.29 -0.3
3,319,583 + PGA1_c31770 0.29 +0.1
3,319,583 + PGA1_c31770 0.29 -1.4
3,319,586 - PGA1_c31770 0.29 +0.0
3,319,586 - PGA1_c31770 0.29 -0.2
3,319,586 - PGA1_c31770 0.29 -0.5
3,319,588 + PGA1_c31770 0.29 -0.4
3,319,591 - PGA1_c31770 0.30 -1.1
3,319,591 - PGA1_c31770 0.30 -0.0
3,319,591 - PGA1_c31770 0.30 -1.0
3,319,592 + PGA1_c31770 0.30 +1.5
3,319,592 + PGA1_c31770 0.30 +1.2
3,319,592 + PGA1_c31770 0.30 -0.3
3,319,592 + PGA1_c31770 0.30 -0.1
3,319,592 + PGA1_c31770 0.30 +0.1
3,319,592 + PGA1_c31770 0.30 +0.8
3,319,592 + PGA1_c31770 0.30 +0.7
3,319,592 + PGA1_c31770 0.30 +0.6
3,319,592 + PGA1_c31770 0.30 +0.8
3,319,592 + PGA1_c31770 0.30 -0.3
3,319,592 + PGA1_c31770 0.30 -0.6
3,319,597 + PGA1_c31770 0.30 +0.4
3,319,597 + PGA1_c31770 0.30 +0.5
3,319,600 - PGA1_c31770 0.30 -1.4
3,319,600 - PGA1_c31770 0.30 +1.0
3,319,600 - PGA1_c31770 0.30 -1.6
3,319,600 - PGA1_c31770 0.30 -0.1
3,319,600 - PGA1_c31770 0.30 -0.1
3,319,600 - PGA1_c31770 0.30 +0.5
3,319,600 - PGA1_c31770 0.30 -0.3
3,319,600 - PGA1_c31770 0.30 -0.5
3,319,600 - PGA1_c31770 0.30 -0.1
3,319,600 - PGA1_c31770 0.30 +0.3
3,319,600 - PGA1_c31770 0.30 +0.5
3,319,600 - PGA1_c31770 0.30 +0.1
3,319,600 - PGA1_c31770 0.30 -1.7
3,319,600 - PGA1_c31770 0.30 -0.0
3,319,600 - PGA1_c31770 0.30 -0.4
3,319,600 - PGA1_c31770 0.30 -0.3
3,319,605 - PGA1_c31770 0.30 +0.6
3,319,605 - PGA1_c31770 0.30 +0.2
3,319,605 - PGA1_c31770 0.30 -1.4
3,319,605 - PGA1_c31770 0.30 -0.8
3,319,648 - PGA1_c31770 0.32 -0.6
3,319,648 - PGA1_c31770 0.32 +0.8
3,319,668 - PGA1_c31770 0.33 +0.8
3,319,686 + PGA1_c31770 0.34 +0.4
3,319,686 - PGA1_c31770 0.34 -2.4
3,319,694 - PGA1_c31770 0.35 -0.1
3,319,704 + PGA1_c31770 0.35 -0.3
3,319,712 - PGA1_c31770 0.35 -1.9
3,319,741 - PGA1_c31770 0.37 +1.0
3,319,755 + PGA1_c31770 0.38 +0.5

Or see this region's nucleotide sequence