Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03000 and PGA1_c03010 are separated by 278 nucleotides PGA1_c03010 and PGA1_c03020 overlap by 1 nucleotides PGA1_c03020 and PGA1_c03030 are separated by 5 nucleotides PGA1_c03030 and PGA1_c03040 overlap by 4 nucleotides PGA1_c03040 and PGA1_c03050 are separated by 1 nucleotides
PGA1_c03000: PGA1_c03000 - YHS domain., at 288,655 to 289,128
_c03000
PGA1_c03010: PGA1_c03010 - glycerol-3-phosphate acyltransferase PlsY, at 289,407 to 290,012
_c03010
PGA1_c03020: PGA1_c03020 - dihydroorotase PyrC, at 290,012 to 291,322
_c03020
PGA1_c03030: PGA1_c03030 - hypothetical protein, at 291,328 to 291,861
_c03030
PGA1_c03040: PGA1_c03040 - hypothetical protein, at 291,858 to 292,241
_c03040
PGA1_c03050: PGA1_c03050 - hypothetical protein, at 292,243 to 292,800
_c03050
Position (kb) 290
291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 289.013 kb on - strand, within PGA1_c03000 at 289.014 kb on - strand, within PGA1_c03000 at 289.036 kb on - strand, within PGA1_c03000 at 289.065 kb on + strand, within PGA1_c03000 at 289.065 kb on + strand, within PGA1_c03000 at 289.070 kb on + strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.088 kb on - strand at 289.097 kb on + strand at 289.130 kb on + strand at 289.131 kb on + strand at 289.138 kb on - strand at 289.139 kb on - strand at 289.158 kb on - strand at 289.169 kb on + strand at 289.169 kb on + strand at 289.194 kb on - strand at 289.233 kb on - strand at 289.243 kb on - strand at 289.278 kb on + strand at 289.333 kb on - strand at 289.352 kb on - strand at 289.413 kb on - strand at 290.017 kb on - strand at 290.065 kb on - strand at 290.135 kb on + strand at 290.135 kb on + strand at 290.145 kb on + strand, within PGA1_c03020 at 290.180 kb on + strand, within PGA1_c03020 at 290.193 kb on - strand, within PGA1_c03020 at 290.198 kb on - strand, within PGA1_c03020 at 290.306 kb on - strand, within PGA1_c03020 at 290.336 kb on + strand, within PGA1_c03020 at 290.379 kb on - strand, within PGA1_c03020 at 290.409 kb on + strand, within PGA1_c03020 at 290.417 kb on - strand, within PGA1_c03020 at 290.417 kb on - strand, within PGA1_c03020 at 290.437 kb on - strand, within PGA1_c03020 at 290.452 kb on + strand, within PGA1_c03020 at 290.467 kb on + strand, within PGA1_c03020 at 290.486 kb on + strand, within PGA1_c03020 at 290.572 kb on + strand, within PGA1_c03020 at 290.583 kb on + strand, within PGA1_c03020 at 290.583 kb on + strand, within PGA1_c03020 at 290.583 kb on + strand, within PGA1_c03020 at 290.591 kb on - strand, within PGA1_c03020 at 290.734 kb on + strand, within PGA1_c03020 at 290.908 kb on - strand, within PGA1_c03020 at 290.924 kb on - strand, within PGA1_c03020 at 291.003 kb on + strand, within PGA1_c03020 at 291.013 kb on - strand, within PGA1_c03020 at 291.013 kb on - strand, within PGA1_c03020 at 291.093 kb on + strand, within PGA1_c03020 at 291.093 kb on + strand, within PGA1_c03020 at 291.094 kb on + strand, within PGA1_c03020 at 291.100 kb on + strand, within PGA1_c03020 at 291.118 kb on - strand, within PGA1_c03020 at 291.157 kb on + strand, within PGA1_c03020 at 291.165 kb on - strand, within PGA1_c03020 at 291.228 kb on + strand at 291.236 kb on - strand at 291.248 kb on + strand at 291.256 kb on - strand at 291.313 kb on - strand at 291.313 kb on - strand at 291.317 kb on + strand at 291.344 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.349 kb on + strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.357 kb on - strand at 291.370 kb on + strand at 291.374 kb on - strand at 291.425 kb on + strand, within PGA1_c03030 at 291.433 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.487 kb on - strand, within PGA1_c03030 at 291.511 kb on - strand, within PGA1_c03030 at 291.515 kb on + strand, within PGA1_c03030 at 291.523 kb on - strand, within PGA1_c03030 at 291.528 kb on + strand, within PGA1_c03030 at 291.576 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.616 kb on + strand, within PGA1_c03030 at 291.624 kb on - strand, within PGA1_c03030 at 291.650 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.710 kb on + strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.718 kb on - strand, within PGA1_c03030 at 291.720 kb on + strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.728 kb on - strand, within PGA1_c03030 at 291.731 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.752 kb on + strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.760 kb on - strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.762 kb on + strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.770 kb on - strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.772 kb on + strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.780 kb on - strand, within PGA1_c03030 at 291.784 kb on + strand, within PGA1_c03030 at 291.806 kb on - strand, within PGA1_c03030 at 291.825 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.851 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.856 kb on + strand at 291.859 kb on - strand at 291.859 kb on - strand at 291.863 kb on + strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.864 kb on - strand at 291.893 kb on + strand at 291.898 kb on + strand, within PGA1_c03040 at 291.898 kb on + strand, within PGA1_c03040 at 291.906 kb on - strand, within PGA1_c03040 at 291.918 kb on - strand, within PGA1_c03040 at 291.924 kb on + strand, within PGA1_c03040 at 291.932 kb on + strand, within PGA1_c03040 at 291.940 kb on - strand, within PGA1_c03040 at 291.963 kb on - strand, within PGA1_c03040 at 291.968 kb on - strand, within PGA1_c03040 at 292.007 kb on - strand, within PGA1_c03040 at 292.063 kb on + strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.093 kb on - strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.117 kb on + strand, within PGA1_c03040 at 292.183 kb on + strand, within PGA1_c03040 at 292.214 kb on + strand at 292.239 kb on - strand at 292.273 kb on + strand at 292.276 kb on - strand at 292.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 289,013 - PGA1_c03000 0.76 -0.2 289,014 - PGA1_c03000 0.76 +0.5 289,036 - PGA1_c03000 0.80 +0.6 289,065 + PGA1_c03000 0.86 -0.5 289,065 + PGA1_c03000 0.86 +0.2 289,070 + PGA1_c03000 0.88 +0.3 289,073 - PGA1_c03000 0.88 +1.7 289,073 - PGA1_c03000 0.88 +1.2 289,073 - PGA1_c03000 0.88 -0.3 289,088 - -0.1 289,097 + +2.2 289,130 + +0.2 289,131 + +0.2 289,138 - +0.6 289,139 - +0.6 289,158 - -0.2 289,169 + -0.5 289,169 + +0.0 289,194 - -0.7 289,233 - -1.9 289,243 - +0.3 289,278 + -2.2 289,333 - +1.5 289,352 - -0.7 289,413 - -0.4 290,017 - +0.5 290,065 - -3.3 290,135 + -1.1 290,135 + -2.4 290,145 + PGA1_c03020 0.10 -2.0 290,180 + PGA1_c03020 0.13 -2.6 290,193 - PGA1_c03020 0.14 -2.6 290,198 - PGA1_c03020 0.14 -2.5 290,306 - PGA1_c03020 0.22 -1.7 290,336 + PGA1_c03020 0.25 -1.1 290,379 - PGA1_c03020 0.28 -3.3 290,409 + PGA1_c03020 0.30 -3.0 290,417 - PGA1_c03020 0.31 -1.0 290,417 - PGA1_c03020 0.31 +0.5 290,437 - PGA1_c03020 0.32 -2.8 290,452 + PGA1_c03020 0.34 -3.1 290,467 + PGA1_c03020 0.35 -2.8 290,486 + PGA1_c03020 0.36 -3.3 290,572 + PGA1_c03020 0.43 -1.3 290,583 + PGA1_c03020 0.44 -3.7 290,583 + PGA1_c03020 0.44 -2.8 290,583 + PGA1_c03020 0.44 +0.2 290,591 - PGA1_c03020 0.44 -2.8 290,734 + PGA1_c03020 0.55 -2.2 290,908 - PGA1_c03020 0.68 -1.6 290,924 - PGA1_c03020 0.70 -2.2 291,003 + PGA1_c03020 0.76 -3.0 291,013 - PGA1_c03020 0.76 -2.1 291,013 - PGA1_c03020 0.76 -1.8 291,093 + PGA1_c03020 0.82 -1.2 291,093 + PGA1_c03020 0.82 -2.1 291,094 + PGA1_c03020 0.83 -2.2 291,100 + PGA1_c03020 0.83 -1.7 291,118 - PGA1_c03020 0.84 -3.0 291,157 + PGA1_c03020 0.87 -2.8 291,165 - PGA1_c03020 0.88 -2.4 291,228 + +0.3 291,236 - -2.2 291,248 + -0.8 291,256 - -1.8 291,313 - -1.7 291,313 - -0.8 291,317 + -0.4 291,344 + +0.2 291,349 + -0.5 291,349 + +0.2 291,349 + -0.9 291,349 + +0.3 291,349 + +0.5 291,357 - -0.8 291,357 - +0.7 291,357 - -1.5 291,357 - -0.2 291,357 - -1.8 291,357 - -0.2 291,357 - +0.2 291,357 - +0.4 291,357 - +0.4 291,357 - +0.3 291,370 + -0.1 291,374 - +0.7 291,425 + PGA1_c03030 0.18 +0.4 291,433 - PGA1_c03030 0.20 +1.0 291,487 - PGA1_c03030 0.30 +0.6 291,487 - PGA1_c03030 0.30 +0.0 291,511 - PGA1_c03030 0.34 +0.6 291,515 + PGA1_c03030 0.35 -1.1 291,523 - PGA1_c03030 0.37 -0.6 291,528 + PGA1_c03030 0.37 +0.2 291,576 + PGA1_c03030 0.46 -0.0 291,616 + PGA1_c03030 0.54 -0.4 291,616 + PGA1_c03030 0.54 +1.4 291,624 - PGA1_c03030 0.55 +0.9 291,650 + PGA1_c03030 0.60 -0.2 291,710 + PGA1_c03030 0.72 -2.7 291,710 + PGA1_c03030 0.72 -0.1 291,710 + PGA1_c03030 0.72 -0.1 291,710 + PGA1_c03030 0.72 +0.2 291,710 + PGA1_c03030 0.72 -0.4 291,710 + PGA1_c03030 0.72 -1.0 291,710 + PGA1_c03030 0.72 -1.5 291,710 + PGA1_c03030 0.72 +0.4 291,710 + PGA1_c03030 0.72 -0.6 291,710 + PGA1_c03030 0.72 +1.7 291,710 + PGA1_c03030 0.72 +0.6 291,718 - PGA1_c03030 0.73 -0.5 291,718 - PGA1_c03030 0.73 -0.3 291,718 - PGA1_c03030 0.73 +0.7 291,718 - PGA1_c03030 0.73 -0.1 291,718 - PGA1_c03030 0.73 -1.4 291,718 - PGA1_c03030 0.73 +0.5 291,720 + PGA1_c03030 0.73 +0.3 291,728 - PGA1_c03030 0.75 +0.7 291,728 - PGA1_c03030 0.75 -0.1 291,731 + PGA1_c03030 0.75 +0.3 291,752 + PGA1_c03030 0.79 +0.4 291,752 + PGA1_c03030 0.79 -2.9 291,752 + PGA1_c03030 0.79 +1.6 291,752 + PGA1_c03030 0.79 +0.7 291,752 + PGA1_c03030 0.79 +0.0 291,752 + PGA1_c03030 0.79 +1.3 291,760 - PGA1_c03030 0.81 -0.7 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 -0.2 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 -0.1 291,760 - PGA1_c03030 0.81 +1.3 291,760 - PGA1_c03030 0.81 +0.5 291,760 - PGA1_c03030 0.81 -0.3 291,760 - PGA1_c03030 0.81 +0.5 291,760 - PGA1_c03030 0.81 -1.1 291,760 - PGA1_c03030 0.81 -1.5 291,760 - PGA1_c03030 0.81 +0.8 291,760 - PGA1_c03030 0.81 +0.9 291,760 - PGA1_c03030 0.81 +1.0 291,762 + PGA1_c03030 0.81 +0.5 291,762 + PGA1_c03030 0.81 +0.8 291,762 + PGA1_c03030 0.81 +0.2 291,762 + PGA1_c03030 0.81 -0.1 291,762 + PGA1_c03030 0.81 +1.4 291,762 + PGA1_c03030 0.81 +0.3 291,762 + PGA1_c03030 0.81 +0.5 291,762 + PGA1_c03030 0.81 -0.5 291,770 - PGA1_c03030 0.83 +0.5 291,770 - PGA1_c03030 0.83 -1.6 291,770 - PGA1_c03030 0.83 -1.3 291,770 - PGA1_c03030 0.83 +0.1 291,770 - PGA1_c03030 0.83 -0.5 291,770 - PGA1_c03030 0.83 +0.7 291,772 + PGA1_c03030 0.83 +0.5 291,772 + PGA1_c03030 0.83 +1.2 291,780 - PGA1_c03030 0.85 -0.5 291,780 - PGA1_c03030 0.85 -0.0 291,784 + PGA1_c03030 0.85 -1.4 291,806 - PGA1_c03030 0.90 -1.1 291,825 + -0.3 291,851 + +1.0 291,851 + +0.3 291,851 + -1.8 291,856 + -1.8 291,856 + +0.4 291,856 + -0.3 291,856 + -1.5 291,856 + -0.3 291,856 + -0.3 291,859 - +0.1 291,859 - +0.3 291,863 + -1.1 291,864 - -1.0 291,864 - -0.8 291,864 - +4.1 291,864 - +0.8 291,864 - +0.6 291,864 - +1.5 291,864 - +0.8 291,864 - +0.2 291,864 - -2.9 291,864 - +0.5 291,893 + -0.3 291,898 + PGA1_c03040 0.10 +1.2 291,898 + PGA1_c03040 0.10 +0.3 291,906 - PGA1_c03040 0.12 +0.9 291,918 - PGA1_c03040 0.16 -0.3 291,924 + PGA1_c03040 0.17 +0.2 291,932 + PGA1_c03040 0.19 -0.3 291,940 - PGA1_c03040 0.21 +0.7 291,963 - PGA1_c03040 0.27 -0.3 291,968 - PGA1_c03040 0.29 -1.3 292,007 - PGA1_c03040 0.39 -0.2 292,063 + PGA1_c03040 0.53 -1.0 292,093 - PGA1_c03040 0.61 +1.9 292,093 - PGA1_c03040 0.61 -0.6 292,117 + PGA1_c03040 0.67 -1.0 292,117 + PGA1_c03040 0.67 +0.8 292,183 + PGA1_c03040 0.85 -0.2 292,214 + -0.7 292,239 - +0.4 292,273 + +1.5 292,276 - -1.5 292,276 - +1.0
Or see this region's nucleotide sequence