Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c25210 and PGA1_c25220 overlap by 4 nucleotides PGA1_c25220 and PGA1_c25230 overlap by 4 nucleotides PGA1_c25230 and PGA1_c25240 overlap by 4 nucleotides
PGA1_c25210: PGA1_c25210 - Uncharacterized protein conserved in bacteria, at 2,626,018 to 2,627,022
_c25210
PGA1_c25220: PGA1_c25220 - extensin-like protein, at 2,627,019 to 2,627,882
_c25220
PGA1_c25230: PGA1_c25230 - protein TyrC, at 2,627,879 to 2,628,799
_c25230
PGA1_c25240: PGA1_c25240 - histidinol-phosphate aminotransferase [EC:2.6.1.9] (from data) , at 2,628,796 to 2,629,881
_c25240
Position (kb)
2627
2628
2629 Strain fitness (log2 ratio)
-2
-1
0
1 at 2626.884 kb on - strand, within PGA1_c25210 at 2627.078 kb on - strand at 2627.091 kb on - strand at 2627.099 kb on + strand at 2627.105 kb on - strand at 2627.115 kb on - strand, within PGA1_c25220 at 2627.128 kb on + strand, within PGA1_c25220 at 2627.196 kb on - strand, within PGA1_c25220 at 2627.196 kb on - strand, within PGA1_c25220 at 2627.405 kb on - strand, within PGA1_c25220 at 2627.405 kb on - strand, within PGA1_c25220 at 2627.419 kb on + strand, within PGA1_c25220 at 2627.470 kb on - strand, within PGA1_c25220 at 2627.499 kb on - strand, within PGA1_c25220 at 2627.499 kb on - strand, within PGA1_c25220 at 2627.505 kb on + strand, within PGA1_c25220 at 2627.536 kb on + strand, within PGA1_c25220 at 2627.537 kb on - strand, within PGA1_c25220 at 2627.538 kb on + strand, within PGA1_c25220 at 2627.913 kb on + strand at 2627.913 kb on + strand at 2627.913 kb on + strand at 2627.921 kb on - strand at 2627.926 kb on - strand at 2628.164 kb on - strand, within PGA1_c25230 at 2628.165 kb on - strand, within PGA1_c25230 at 2628.192 kb on + strand, within PGA1_c25230 at 2628.200 kb on - strand, within PGA1_c25230 at 2628.220 kb on - strand, within PGA1_c25230 at 2628.225 kb on - strand, within PGA1_c25230 at 2628.306 kb on - strand, within PGA1_c25230 at 2628.314 kb on + strand, within PGA1_c25230 at 2628.338 kb on + strand, within PGA1_c25230 at 2628.349 kb on + strand, within PGA1_c25230 at 2628.420 kb on + strand, within PGA1_c25230 at 2628.448 kb on + strand, within PGA1_c25230 at 2628.458 kb on - strand, within PGA1_c25230 at 2628.472 kb on - strand, within PGA1_c25230 at 2628.582 kb on - strand, within PGA1_c25230 at 2628.646 kb on + strand, within PGA1_c25230 at 2628.654 kb on - strand, within PGA1_c25230 at 2628.671 kb on + strand, within PGA1_c25230 at 2628.728 kb on + strand at 2628.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 2,626,884 - PGA1_c25210 0.86 -1.2 2,627,078 - -0.0 2,627,091 - +0.9 2,627,099 + +0.6 2,627,105 - -0.2 2,627,115 - PGA1_c25220 0.11 -0.0 2,627,128 + PGA1_c25220 0.13 -1.2 2,627,196 - PGA1_c25220 0.20 +0.4 2,627,196 - PGA1_c25220 0.20 +1.5 2,627,405 - PGA1_c25220 0.45 -1.7 2,627,405 - PGA1_c25220 0.45 -2.7 2,627,419 + PGA1_c25220 0.46 +0.0 2,627,470 - PGA1_c25220 0.52 +1.4 2,627,499 - PGA1_c25220 0.56 +0.4 2,627,499 - PGA1_c25220 0.56 +1.0 2,627,505 + PGA1_c25220 0.56 +1.5 2,627,536 + PGA1_c25220 0.60 +0.6 2,627,537 - PGA1_c25220 0.60 +0.7 2,627,538 + PGA1_c25220 0.60 +0.3 2,627,913 + +0.6 2,627,913 + +0.0 2,627,913 + -1.0 2,627,921 - +0.8 2,627,926 - -0.6 2,628,164 - PGA1_c25230 0.31 -1.7 2,628,165 - PGA1_c25230 0.31 +0.3 2,628,192 + PGA1_c25230 0.34 +0.2 2,628,200 - PGA1_c25230 0.35 -1.3 2,628,220 - PGA1_c25230 0.37 -1.0 2,628,225 - PGA1_c25230 0.38 +0.6 2,628,306 - PGA1_c25230 0.46 -0.4 2,628,314 + PGA1_c25230 0.47 -0.1 2,628,338 + PGA1_c25230 0.50 -1.1 2,628,349 + PGA1_c25230 0.51 +0.4 2,628,420 + PGA1_c25230 0.59 -0.6 2,628,448 + PGA1_c25230 0.62 +0.4 2,628,458 - PGA1_c25230 0.63 -0.8 2,628,472 - PGA1_c25230 0.64 -0.0 2,628,582 - PGA1_c25230 0.76 -1.7 2,628,646 + PGA1_c25230 0.83 -1.2 2,628,654 - PGA1_c25230 0.84 -1.4 2,628,671 + PGA1_c25230 0.86 -2.0 2,628,728 + +0.3 2,628,736 + -0.0
Or see this region's nucleotide sequence