Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21810 and PGA1_c21820 are separated by 116 nucleotides PGA1_c21820 and PGA1_c21830 are separated by 60 nucleotides
PGA1_c21810: PGA1_c21810 - metallophosphoesterase, MG_246/BB_0505 family, at 2,262,928 to 2,263,740
_c21810
PGA1_c21820: PGA1_c21820 - 5-formyltetrahydrofolate cycloligase-like protein, at 2,263,857 to 2,264,420
_c21820
PGA1_c21830: PGA1_c21830 - magnesium transporter MgtE, at 2,264,481 to 2,265,869
_c21830
Position (kb)
2263
2264
2265 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2262.858 kb on + strand at 2262.858 kb on + strand at 2262.863 kb on + strand at 2262.863 kb on + strand at 2262.863 kb on + strand at 2262.866 kb on - strand at 2262.871 kb on - strand at 2262.871 kb on - strand at 2262.917 kb on - strand at 2262.926 kb on + strand at 2262.941 kb on - strand at 2263.200 kb on + strand, within PGA1_c21810 at 2263.798 kb on - strand at 2263.851 kb on - strand at 2263.851 kb on - strand at 2263.856 kb on - strand at 2263.869 kb on - strand at 2263.869 kb on - strand at 2263.874 kb on + strand at 2263.899 kb on + strand at 2263.997 kb on + strand, within PGA1_c21820 at 2264.005 kb on - strand, within PGA1_c21820 at 2264.059 kb on - strand, within PGA1_c21820 at 2264.073 kb on + strand, within PGA1_c21820 at 2264.190 kb on - strand, within PGA1_c21820 at 2264.190 kb on - strand, within PGA1_c21820 at 2264.268 kb on - strand, within PGA1_c21820 at 2264.359 kb on + strand, within PGA1_c21820 at 2264.395 kb on + strand at 2264.395 kb on + strand at 2264.395 kb on + strand at 2264.395 kb on + strand at 2264.395 kb on + strand at 2264.395 kb on + strand at 2264.395 kb on + strand at 2264.395 kb on + strand at 2264.395 kb on + strand at 2264.395 kb on + strand at 2264.395 kb on + strand at 2264.403 kb on - strand at 2264.403 kb on - strand at 2264.403 kb on - strand at 2264.403 kb on - strand at 2264.405 kb on + strand at 2264.413 kb on - strand at 2264.413 kb on - strand at 2264.413 kb on - strand at 2264.431 kb on + strand at 2264.435 kb on - strand at 2264.435 kb on - strand at 2264.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 2,262,858 + +0.3 2,262,858 + -0.7 2,262,863 + +0.3 2,262,863 + +1.4 2,262,863 + +0.5 2,262,866 - -0.7 2,262,871 - +0.4 2,262,871 - -0.5 2,262,917 - +0.3 2,262,926 + -0.2 2,262,941 - -1.2 2,263,200 + PGA1_c21810 0.33 +1.4 2,263,798 - -0.2 2,263,851 - -0.1 2,263,851 - +0.4 2,263,856 - -1.0 2,263,869 - -1.4 2,263,869 - +1.2 2,263,874 + -1.6 2,263,899 + -2.0 2,263,997 + PGA1_c21820 0.25 -3.6 2,264,005 - PGA1_c21820 0.26 -1.8 2,264,059 - PGA1_c21820 0.36 -3.2 2,264,073 + PGA1_c21820 0.38 -1.8 2,264,190 - PGA1_c21820 0.59 -2.5 2,264,190 - PGA1_c21820 0.59 -1.9 2,264,268 - PGA1_c21820 0.73 -2.7 2,264,359 + PGA1_c21820 0.89 -1.9 2,264,395 + -0.1 2,264,395 + -1.1 2,264,395 + -1.0 2,264,395 + -2.5 2,264,395 + +0.0 2,264,395 + -1.1 2,264,395 + +0.4 2,264,395 + +0.5 2,264,395 + -1.5 2,264,395 + -0.6 2,264,395 + +1.1 2,264,403 - -0.5 2,264,403 - -1.8 2,264,403 - +1.2 2,264,403 - -1.0 2,264,405 + -3.2 2,264,413 - -3.1 2,264,413 - -0.7 2,264,413 - -1.1 2,264,431 + -0.4 2,264,435 - -2.5 2,264,435 - +0.2 2,264,482 - +2.4
Or see this region's nucleotide sequence