Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c20720 and PGA1_c20730 are separated by 204 nucleotides PGA1_c20730 and PGA1_c20740 are separated by 146 nucleotides PGA1_c20740 and PGA1_c20750 overlap by 1 nucleotides PGA1_c20750 and PGA1_c20760 overlap by 8 nucleotides
PGA1_c20720: PGA1_c20720 - transporter, MFS family, at 2,149,274 to 2,150,479
_c20720
PGA1_c20730: PGA1_c20730 - transcriptional regulator, AsnC family, at 2,150,684 to 2,151,163
_c20730
PGA1_c20740: PGA1_c20740 - uroporphyrinogen-III C-methyltransferase CobA, at 2,151,310 to 2,152,143
_c20740
PGA1_c20750: PGA1_c20750 - Protein of unknown function (DUF2849)., at 2,152,143 to 2,152,451
_c20750
PGA1_c20760: PGA1_c20760 - putative nitrite/sulfite reductase, at 2,152,444 to 2,154,108
_c20760
Position (kb)
2151
2152
2153 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2150.354 kb on - strand, within PGA1_c20720 at 2150.428 kb on + strand at 2150.462 kb on + strand at 2150.506 kb on - strand at 2150.607 kb on + strand at 2150.645 kb on + strand at 2150.649 kb on + strand at 2151.383 kb on - strand at 2151.566 kb on + strand, within PGA1_c20740 at 2151.566 kb on + strand, within PGA1_c20740 at 2151.632 kb on + strand, within PGA1_c20740 at 2151.699 kb on - strand, within PGA1_c20740 at 2151.735 kb on + strand, within PGA1_c20740 at 2151.777 kb on + strand, within PGA1_c20740 at 2151.787 kb on - strand, within PGA1_c20740 at 2151.787 kb on - strand, within PGA1_c20740 at 2151.860 kb on - strand, within PGA1_c20740 at 2151.860 kb on - strand, within PGA1_c20740 at 2151.862 kb on + strand, within PGA1_c20740 at 2151.870 kb on - strand, within PGA1_c20740 at 2151.870 kb on - strand, within PGA1_c20740 at 2151.870 kb on - strand, within PGA1_c20740 at 2151.935 kb on - strand, within PGA1_c20740 at 2152.093 kb on - strand at 2152.105 kb on + strand at 2152.574 kb on + strand at 2152.595 kb on + strand at 2152.634 kb on + strand at 2152.660 kb on - strand, within PGA1_c20760 at 2152.797 kb on - strand, within PGA1_c20760
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 2,150,354 - PGA1_c20720 0.90 -0.4 2,150,428 + +0.3 2,150,462 + +1.4 2,150,506 - -1.7 2,150,607 + -0.1 2,150,645 + +0.6 2,150,649 + -0.9 2,151,383 - -3.0 2,151,566 + PGA1_c20740 0.31 -2.9 2,151,566 + PGA1_c20740 0.31 -2.0 2,151,632 + PGA1_c20740 0.39 -3.2 2,151,699 - PGA1_c20740 0.47 -1.5 2,151,735 + PGA1_c20740 0.51 -2.5 2,151,777 + PGA1_c20740 0.56 -0.5 2,151,787 - PGA1_c20740 0.57 -3.4 2,151,787 - PGA1_c20740 0.57 -2.6 2,151,860 - PGA1_c20740 0.66 -1.6 2,151,860 - PGA1_c20740 0.66 -1.4 2,151,862 + PGA1_c20740 0.66 -0.7 2,151,870 - PGA1_c20740 0.67 -3.6 2,151,870 - PGA1_c20740 0.67 -1.4 2,151,870 - PGA1_c20740 0.67 -3.2 2,151,935 - PGA1_c20740 0.75 -3.4 2,152,093 - -1.3 2,152,105 + -2.0 2,152,574 + -0.6 2,152,595 + -3.3 2,152,634 + -1.8 2,152,660 - PGA1_c20760 0.13 -1.0 2,152,797 - PGA1_c20760 0.21 -1.2
Or see this region's nucleotide sequence