Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01960 and PGA1_c01970 are separated by 4 nucleotides PGA1_c01970 and PGA1_c01980 are separated by 229 nucleotides PGA1_c01980 and PGA1_c01990 are separated by 143 nucleotides
PGA1_c01960: PGA1_c01960 - putative hydrolase, at 178,978 to 179,646
_c01960
PGA1_c01970: PGA1_c01970 - Chaperone required for the assembly of the mitochondrial F1-ATPase, at 179,651 to 180,358
_c01970
PGA1_c01980: PGA1_c01980 - glutamate/glutamine/aspartate/asparagine-binding protein BztA, at 180,588 to 181,604
_c01980
PGA1_c01990: PGA1_c01990 - glutamate/glutamine/aspartate/asparagine transport system permease protein BztB, at 181,748 to 182,980
_c01990
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 179.631 kb on + strand at 179.653 kb on - strand at 180.345 kb on - strand at 180.422 kb on + strand at 180.430 kb on - strand at 180.459 kb on - strand at 180.476 kb on + strand at 180.528 kb on - strand at 180.531 kb on + strand at 180.536 kb on + strand at 180.571 kb on + strand at 180.617 kb on + strand at 180.617 kb on + strand at 180.658 kb on + strand at 180.708 kb on + strand, within PGA1_c01980 at 180.711 kb on - strand, within PGA1_c01980 at 180.711 kb on - strand, within PGA1_c01980 at 180.711 kb on - strand, within PGA1_c01980 at 180.718 kb on + strand, within PGA1_c01980 at 180.718 kb on + strand, within PGA1_c01980 at 180.718 kb on + strand, within PGA1_c01980 at 180.726 kb on - strand, within PGA1_c01980 at 180.728 kb on + strand, within PGA1_c01980 at 180.754 kb on + strand, within PGA1_c01980 at 180.792 kb on + strand, within PGA1_c01980 at 180.918 kb on + strand, within PGA1_c01980 at 180.957 kb on + strand, within PGA1_c01980 at 180.965 kb on - strand, within PGA1_c01980 at 181.013 kb on - strand, within PGA1_c01980 at 181.090 kb on + strand, within PGA1_c01980 at 181.096 kb on + strand, within PGA1_c01980 at 181.161 kb on - strand, within PGA1_c01980 at 181.172 kb on + strand, within PGA1_c01980 at 181.312 kb on - strand, within PGA1_c01980 at 181.325 kb on + strand, within PGA1_c01980 at 181.580 kb on + strand at 181.627 kb on + strand at 181.635 kb on - strand at 181.655 kb on + strand at 181.688 kb on - strand at 181.714 kb on + strand at 181.721 kb on + strand at 181.757 kb on + strand at 181.779 kb on + strand at 181.850 kb on + strand at 181.855 kb on + strand at 181.866 kb on + strand at 181.892 kb on - strand, within PGA1_c01990 at 181.910 kb on + strand, within PGA1_c01990 at 181.918 kb on - strand, within PGA1_c01990 at 181.918 kb on - strand, within PGA1_c01990 at 182.021 kb on + strand, within PGA1_c01990 at 182.084 kb on - strand, within PGA1_c01990 at 182.095 kb on + strand, within PGA1_c01990 at 182.281 kb on - strand, within PGA1_c01990 at 182.339 kb on - strand, within PGA1_c01990 at 182.371 kb on + strand, within PGA1_c01990 at 182.371 kb on + strand, within PGA1_c01990 at 182.371 kb on + strand, within PGA1_c01990 at 182.379 kb on - strand, within PGA1_c01990 at 182.384 kb on - strand, within PGA1_c01990 at 182.407 kb on - strand, within PGA1_c01990 at 182.483 kb on - strand, within PGA1_c01990 at 182.515 kb on + strand, within PGA1_c01990 at 182.523 kb on - strand, within PGA1_c01990 at 182.523 kb on - strand, within PGA1_c01990 at 182.525 kb on - strand, within PGA1_c01990 at 182.556 kb on - strand, within PGA1_c01990 at 182.592 kb on + strand, within PGA1_c01990
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 179,631 + -0.1 179,653 - +1.2 180,345 - -0.1 180,422 + -0.3 180,430 - +0.1 180,459 - -0.4 180,476 + +1.5 180,528 - -2.9 180,531 + -1.5 180,536 + +0.8 180,571 + -0.5 180,617 + -1.5 180,617 + -2.7 180,658 + -1.4 180,708 + PGA1_c01980 0.12 +0.7 180,711 - PGA1_c01980 0.12 -0.9 180,711 - PGA1_c01980 0.12 +1.5 180,711 - PGA1_c01980 0.12 -0.3 180,718 + PGA1_c01980 0.13 -1.9 180,718 + PGA1_c01980 0.13 -1.7 180,718 + PGA1_c01980 0.13 -1.9 180,726 - PGA1_c01980 0.14 -0.1 180,728 + PGA1_c01980 0.14 -0.1 180,754 + PGA1_c01980 0.16 -2.2 180,792 + PGA1_c01980 0.20 -0.5 180,918 + PGA1_c01980 0.32 +0.5 180,957 + PGA1_c01980 0.36 -0.1 180,965 - PGA1_c01980 0.37 +2.5 181,013 - PGA1_c01980 0.42 -0.9 181,090 + PGA1_c01980 0.49 +0.1 181,096 + PGA1_c01980 0.50 -1.3 181,161 - PGA1_c01980 0.56 +0.5 181,172 + PGA1_c01980 0.57 -1.1 181,312 - PGA1_c01980 0.71 -0.9 181,325 + PGA1_c01980 0.72 -1.5 181,580 + -2.3 181,627 + -1.3 181,635 - -0.4 181,655 + -0.3 181,688 - +0.2 181,714 + +0.6 181,721 + -0.0 181,757 + -0.5 181,779 + -0.5 181,850 + -1.5 181,855 + +0.2 181,866 + -0.7 181,892 - PGA1_c01990 0.12 -2.5 181,910 + PGA1_c01990 0.13 +0.1 181,918 - PGA1_c01990 0.14 -2.0 181,918 - PGA1_c01990 0.14 -0.9 182,021 + PGA1_c01990 0.22 -0.5 182,084 - PGA1_c01990 0.27 -1.1 182,095 + PGA1_c01990 0.28 +0.1 182,281 - PGA1_c01990 0.43 -1.5 182,339 - PGA1_c01990 0.48 +0.5 182,371 + PGA1_c01990 0.51 -1.3 182,371 + PGA1_c01990 0.51 +0.7 182,371 + PGA1_c01990 0.51 -1.0 182,379 - PGA1_c01990 0.51 +0.1 182,384 - PGA1_c01990 0.52 -0.7 182,407 - PGA1_c01990 0.53 -2.2 182,483 - PGA1_c01990 0.60 +0.0 182,515 + PGA1_c01990 0.62 -0.8 182,523 - PGA1_c01990 0.63 -1.2 182,523 - PGA1_c01990 0.63 -0.6 182,525 - PGA1_c01990 0.63 -1.1 182,556 - PGA1_c01990 0.66 -0.2 182,592 + PGA1_c01990 0.68 -1.0
Or see this region's nucleotide sequence