Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16440 and PGA1_c16450 are separated by 86 nucleotides PGA1_c16450 and PGA1_c16460 overlap by 1 nucleotides
PGA1_c16440: PGA1_c16440 - MFS transporter, at 1,704,296 to 1,705,522
_c16440
PGA1_c16450: PGA1_c16450 - Phytoene/squalene synthetase, at 1,705,609 to 1,706,388
_c16450
PGA1_c16460: PGA1_c16460 - 2-isopropylmalate synthase/homocitrate synthase-like protein, at 1,706,388 to 1,708,019
_c16460
Position (kb)
1705
1706
1707 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1704.756 kb on - strand, within PGA1_c16440 at 1704.796 kb on - strand, within PGA1_c16440 at 1704.917 kb on - strand, within PGA1_c16440 at 1704.924 kb on + strand, within PGA1_c16440 at 1704.985 kb on - strand, within PGA1_c16440 at 1705.278 kb on + strand, within PGA1_c16440 at 1705.286 kb on - strand, within PGA1_c16440 at 1705.298 kb on + strand, within PGA1_c16440 at 1705.337 kb on - strand, within PGA1_c16440 at 1705.398 kb on + strand, within PGA1_c16440 at 1705.415 kb on + strand at 1705.488 kb on - strand at 1705.498 kb on + strand at 1705.607 kb on + strand at 1705.613 kb on - strand at 1705.636 kb on + strand at 1705.649 kb on - strand at 1705.839 kb on + strand, within PGA1_c16450 at 1706.105 kb on + strand, within PGA1_c16450 at 1706.230 kb on + strand, within PGA1_c16450 at 1706.230 kb on + strand, within PGA1_c16450 at 1706.232 kb on - strand, within PGA1_c16450 at 1706.541 kb on + strand at 1706.601 kb on + strand, within PGA1_c16460 at 1706.630 kb on - strand, within PGA1_c16460 at 1706.649 kb on - strand, within PGA1_c16460 at 1706.743 kb on + strand, within PGA1_c16460 at 1706.760 kb on - strand, within PGA1_c16460 at 1706.791 kb on + strand, within PGA1_c16460 at 1706.799 kb on - strand, within PGA1_c16460 at 1706.799 kb on - strand, within PGA1_c16460 at 1707.106 kb on + strand, within PGA1_c16460 at 1707.261 kb on - strand, within PGA1_c16460 at 1707.313 kb on + strand, within PGA1_c16460 at 1707.316 kb on - strand, within PGA1_c16460 at 1707.336 kb on - strand, within PGA1_c16460
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 1,704,756 - PGA1_c16440 0.37 +2.1 1,704,796 - PGA1_c16440 0.41 -0.7 1,704,917 - PGA1_c16440 0.51 -1.0 1,704,924 + PGA1_c16440 0.51 -0.0 1,704,985 - PGA1_c16440 0.56 +0.5 1,705,278 + PGA1_c16440 0.80 +0.5 1,705,286 - PGA1_c16440 0.81 +0.9 1,705,298 + PGA1_c16440 0.82 +0.2 1,705,337 - PGA1_c16440 0.85 +0.5 1,705,398 + PGA1_c16440 0.90 +0.3 1,705,415 + -0.3 1,705,488 - -0.8 1,705,498 + -0.1 1,705,607 + -0.3 1,705,613 - +0.2 1,705,636 + -2.8 1,705,649 - -0.9 1,705,839 + PGA1_c16450 0.29 -0.1 1,706,105 + PGA1_c16450 0.64 -2.0 1,706,230 + PGA1_c16450 0.80 -0.3 1,706,230 + PGA1_c16450 0.80 -1.3 1,706,232 - PGA1_c16450 0.80 -2.1 1,706,541 + +0.7 1,706,601 + PGA1_c16460 0.13 +1.1 1,706,630 - PGA1_c16460 0.15 +0.7 1,706,649 - PGA1_c16460 0.16 +0.8 1,706,743 + PGA1_c16460 0.22 +0.0 1,706,760 - PGA1_c16460 0.23 +1.2 1,706,791 + PGA1_c16460 0.25 +0.5 1,706,799 - PGA1_c16460 0.25 +0.7 1,706,799 - PGA1_c16460 0.25 +0.9 1,707,106 + PGA1_c16460 0.44 +0.1 1,707,261 - PGA1_c16460 0.53 +1.3 1,707,313 + PGA1_c16460 0.57 -0.8 1,707,316 - PGA1_c16460 0.57 -1.5 1,707,336 - PGA1_c16460 0.58 +0.8
Or see this region's nucleotide sequence