Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16020 and PGA1_c16030 are separated by 240 nucleotides PGA1_c16030 and PGA1_c16040 are separated by 330 nucleotides PGA1_c16040 and PGA1_c16050 are separated by 3 nucleotides PGA1_c16050 and PGA1_c16060 are separated by 26 nucleotides
PGA1_c16020: PGA1_c16020 - Uncharacterized protein conserved in bacteria, at 1,662,875 to 1,663,450
_c16020
PGA1_c16030: PGA1_c16030 - tRNA-Arg, at 1,663,691 to 1,663,767
_c16030
PGA1_c16040: PGA1_c16040 - Methionine synthase component, pterin-binding domain (EC:2.1.1.13) (from data) , at 1,664,098 to 1,665,159
_c16040
PGA1_c16050: PGA1_c16050 - 5,10-methylenetetrahydrofolate reductase, at 1,665,163 to 1,666,095
_c16050
PGA1_c16060: PGA1_c16060 - hypothetical protein, at 1,666,122 to 1,666,418
_c16060
Position (kb)
1664
1665
1666 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1663.493 kb on + strand at 1663.586 kb on + strand at 1663.594 kb on - strand at 1663.785 kb on - strand at 1663.807 kb on - strand at 1663.809 kb on - strand at 1663.872 kb on - strand at 1663.872 kb on - strand at 1663.903 kb on - strand at 1663.941 kb on + strand at 1663.967 kb on + strand at 1663.981 kb on - strand at 1663.993 kb on + strand at 1664.006 kb on + strand at 1664.007 kb on - strand at 1664.025 kb on + strand at 1664.070 kb on - strand at 1664.270 kb on - strand, within PGA1_c16040 at 1664.320 kb on - strand, within PGA1_c16040 at 1664.410 kb on + strand, within PGA1_c16040 at 1664.418 kb on - strand, within PGA1_c16040 at 1664.431 kb on - strand, within PGA1_c16040 at 1664.556 kb on + strand, within PGA1_c16040 at 1664.811 kb on - strand, within PGA1_c16040 at 1664.923 kb on - strand, within PGA1_c16040 at 1664.985 kb on - strand, within PGA1_c16040 at 1664.987 kb on + strand, within PGA1_c16040 at 1664.995 kb on - strand, within PGA1_c16040 at 1665.235 kb on - strand at 1665.465 kb on + strand, within PGA1_c16050 at 1665.473 kb on - strand, within PGA1_c16050 at 1665.479 kb on + strand, within PGA1_c16050 at 1665.480 kb on + strand, within PGA1_c16050 at 1665.638 kb on + strand, within PGA1_c16050 at 1665.726 kb on - strand, within PGA1_c16050 at 1665.726 kb on - strand, within PGA1_c16050 at 1665.732 kb on - strand, within PGA1_c16050 at 1665.785 kb on + strand, within PGA1_c16050 at 1665.932 kb on + strand, within PGA1_c16050 at 1665.992 kb on + strand, within PGA1_c16050 at 1666.056 kb on - strand at 1666.061 kb on - strand at 1666.104 kb on + strand at 1666.152 kb on + strand, within PGA1_c16060 at 1666.152 kb on + strand, within PGA1_c16060
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 1,663,493 + -0.9 1,663,586 + -0.0 1,663,594 - -0.2 1,663,785 - +0.9 1,663,807 - +0.0 1,663,809 - +0.3 1,663,872 - -0.1 1,663,872 - +0.5 1,663,903 - -0.5 1,663,941 + -0.0 1,663,967 + +1.0 1,663,981 - -0.2 1,663,993 + -0.0 1,664,006 + -0.5 1,664,007 - -0.3 1,664,025 + +1.1 1,664,070 - -0.0 1,664,270 - PGA1_c16040 0.16 -1.8 1,664,320 - PGA1_c16040 0.21 -2.1 1,664,410 + PGA1_c16040 0.29 -1.7 1,664,418 - PGA1_c16040 0.30 -3.7 1,664,431 - PGA1_c16040 0.31 -2.9 1,664,556 + PGA1_c16040 0.43 -3.3 1,664,811 - PGA1_c16040 0.67 -1.8 1,664,923 - PGA1_c16040 0.78 -2.1 1,664,985 - PGA1_c16040 0.84 -3.1 1,664,987 + PGA1_c16040 0.84 -1.5 1,664,995 - PGA1_c16040 0.84 -2.6 1,665,235 - -1.3 1,665,465 + PGA1_c16050 0.32 -3.3 1,665,473 - PGA1_c16050 0.33 -1.6 1,665,479 + PGA1_c16050 0.34 -2.0 1,665,480 + PGA1_c16050 0.34 -2.3 1,665,638 + PGA1_c16050 0.51 -2.2 1,665,726 - PGA1_c16050 0.60 -0.1 1,665,726 - PGA1_c16050 0.60 -1.0 1,665,732 - PGA1_c16050 0.61 -1.3 1,665,785 + PGA1_c16050 0.67 -1.7 1,665,932 + PGA1_c16050 0.82 -3.5 1,665,992 + PGA1_c16050 0.89 -0.8 1,666,056 - -2.6 1,666,061 - -3.1 1,666,104 + +0.7 1,666,152 + PGA1_c16060 0.10 -1.2 1,666,152 + PGA1_c16060 0.10 +1.5
Or see this region's nucleotide sequence