Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15510 and PGA1_c15520 are separated by 73 nucleotides PGA1_c15520 and PGA1_c15530 are separated by 94 nucleotides PGA1_c15530 and PGA1_c15540 are separated by 29 nucleotides
PGA1_c15510: PGA1_c15510 - glutamate 5-kinase ProB, at 1,613,221 to 1,614,327
_c15510
PGA1_c15520: PGA1_c15520 - gamma-glutamyl phosphate reductase ProA, at 1,614,401 to 1,615,666
_c15520
PGA1_c15530: PGA1_c15530 - Uncharacterized protein conserved in bacteria, at 1,615,761 to 1,616,357
_c15530
PGA1_c15540: PGA1_c15540 - Protein of unknown function (DUF3553)., at 1,616,387 to 1,616,572
_c15540
Position (kb)
1614
1615
1616 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1613.407 kb on + strand, within PGA1_c15510 at 1613.422 kb on + strand, within PGA1_c15510 at 1613.525 kb on + strand, within PGA1_c15510 at 1613.532 kb on + strand, within PGA1_c15510 at 1613.532 kb on + strand, within PGA1_c15510 at 1613.543 kb on + strand, within PGA1_c15510 at 1613.545 kb on + strand, within PGA1_c15510 at 1613.679 kb on - strand, within PGA1_c15510 at 1613.751 kb on + strand, within PGA1_c15510 at 1613.757 kb on - strand, within PGA1_c15510 at 1613.759 kb on - strand, within PGA1_c15510 at 1613.856 kb on - strand, within PGA1_c15510 at 1614.156 kb on - strand, within PGA1_c15510 at 1614.213 kb on + strand, within PGA1_c15510 at 1614.213 kb on + strand, within PGA1_c15510 at 1614.221 kb on - strand at 1614.235 kb on + strand at 1614.348 kb on + strand at 1614.352 kb on - strand at 1614.548 kb on - strand, within PGA1_c15520 at 1614.725 kb on - strand, within PGA1_c15520 at 1614.725 kb on - strand, within PGA1_c15520 at 1614.725 kb on - strand, within PGA1_c15520 at 1614.756 kb on + strand, within PGA1_c15520 at 1614.759 kb on + strand, within PGA1_c15520 at 1614.764 kb on + strand, within PGA1_c15520 at 1614.767 kb on - strand, within PGA1_c15520 at 1614.861 kb on + strand, within PGA1_c15520 at 1614.890 kb on + strand, within PGA1_c15520 at 1614.911 kb on + strand, within PGA1_c15520 at 1614.929 kb on - strand, within PGA1_c15520 at 1615.044 kb on - strand, within PGA1_c15520 at 1615.055 kb on - strand, within PGA1_c15520 at 1615.105 kb on + strand, within PGA1_c15520 at 1615.105 kb on + strand, within PGA1_c15520 at 1615.178 kb on + strand, within PGA1_c15520 at 1615.183 kb on + strand, within PGA1_c15520 at 1615.363 kb on + strand, within PGA1_c15520 at 1615.416 kb on - strand, within PGA1_c15520 at 1615.416 kb on - strand, within PGA1_c15520 at 1615.484 kb on + strand, within PGA1_c15520 at 1615.502 kb on - strand, within PGA1_c15520 at 1615.585 kb on - strand at 1615.739 kb on + strand at 1615.781 kb on + strand at 1615.796 kb on - strand at 1615.812 kb on + strand at 1615.812 kb on + strand at 1615.812 kb on + strand at 1615.856 kb on + strand, within PGA1_c15530 at 1615.882 kb on - strand, within PGA1_c15530 at 1615.888 kb on + strand, within PGA1_c15530 at 1615.888 kb on + strand, within PGA1_c15530 at 1615.896 kb on - strand, within PGA1_c15530 at 1615.971 kb on - strand, within PGA1_c15530 at 1615.979 kb on - strand, within PGA1_c15530 at 1615.979 kb on - strand, within PGA1_c15530 at 1615.979 kb on - strand, within PGA1_c15530 at 1615.980 kb on - strand, within PGA1_c15530 at 1616.111 kb on - strand, within PGA1_c15530 at 1616.313 kb on + strand at 1616.322 kb on + strand at 1616.364 kb on + strand at 1616.372 kb on - strand at 1616.395 kb on + strand at 1616.465 kb on + strand, within PGA1_c15540 at 1616.470 kb on + strand, within PGA1_c15540 at 1616.478 kb on - strand, within PGA1_c15540 at 1616.512 kb on + strand, within PGA1_c15540 at 1616.512 kb on + strand, within PGA1_c15540 at 1616.512 kb on + strand, within PGA1_c15540 at 1616.512 kb on + strand, within PGA1_c15540 at 1616.512 kb on + strand, within PGA1_c15540 at 1616.512 kb on + strand, within PGA1_c15540 at 1616.520 kb on - strand, within PGA1_c15540 at 1616.520 kb on - strand, within PGA1_c15540 at 1616.520 kb on - strand, within PGA1_c15540 at 1616.520 kb on - strand, within PGA1_c15540 at 1616.520 kb on - strand, within PGA1_c15540 at 1616.520 kb on - strand, within PGA1_c15540 at 1616.520 kb on - strand, within PGA1_c15540 at 1616.520 kb on - strand, within PGA1_c15540 at 1616.520 kb on - strand, within PGA1_c15540 at 1616.532 kb on + strand, within PGA1_c15540 at 1616.532 kb on - strand, within PGA1_c15540 at 1616.540 kb on - strand, within PGA1_c15540 at 1616.549 kb on + strand, within PGA1_c15540 at 1616.573 kb on + strand at 1616.586 kb on + strand at 1616.586 kb on + strand at 1616.594 kb on - strand at 1616.594 kb on - strand at 1616.624 kb on + strand at 1616.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 1,613,407 + PGA1_c15510 0.17 -0.4 1,613,422 + PGA1_c15510 0.18 +0.1 1,613,525 + PGA1_c15510 0.27 -0.9 1,613,532 + PGA1_c15510 0.28 +0.8 1,613,532 + PGA1_c15510 0.28 +0.9 1,613,543 + PGA1_c15510 0.29 -0.1 1,613,545 + PGA1_c15510 0.29 -0.1 1,613,679 - PGA1_c15510 0.41 +0.6 1,613,751 + PGA1_c15510 0.48 +0.6 1,613,757 - PGA1_c15510 0.48 +0.3 1,613,759 - PGA1_c15510 0.49 +1.1 1,613,856 - PGA1_c15510 0.57 -0.6 1,614,156 - PGA1_c15510 0.84 +0.6 1,614,213 + PGA1_c15510 0.90 +0.4 1,614,213 + PGA1_c15510 0.90 -0.4 1,614,221 - -0.3 1,614,235 + +1.0 1,614,348 + +0.1 1,614,352 - +0.6 1,614,548 - PGA1_c15520 0.12 -0.0 1,614,725 - PGA1_c15520 0.26 -0.5 1,614,725 - PGA1_c15520 0.26 +2.0 1,614,725 - PGA1_c15520 0.26 +0.3 1,614,756 + PGA1_c15520 0.28 +0.1 1,614,759 + PGA1_c15520 0.28 -0.5 1,614,764 + PGA1_c15520 0.29 +1.0 1,614,767 - PGA1_c15520 0.29 -0.1 1,614,861 + PGA1_c15520 0.36 -0.8 1,614,890 + PGA1_c15520 0.39 -0.9 1,614,911 + PGA1_c15520 0.40 -0.5 1,614,929 - PGA1_c15520 0.42 +0.6 1,615,044 - PGA1_c15520 0.51 +0.5 1,615,055 - PGA1_c15520 0.52 +0.3 1,615,105 + PGA1_c15520 0.56 +0.0 1,615,105 + PGA1_c15520 0.56 +0.1 1,615,178 + PGA1_c15520 0.61 -0.9 1,615,183 + PGA1_c15520 0.62 +0.3 1,615,363 + PGA1_c15520 0.76 +0.1 1,615,416 - PGA1_c15520 0.80 +1.1 1,615,416 - PGA1_c15520 0.80 +0.1 1,615,484 + PGA1_c15520 0.86 +0.8 1,615,502 - PGA1_c15520 0.87 +0.6 1,615,585 - +0.2 1,615,739 + -0.1 1,615,781 + -0.1 1,615,796 - +0.4 1,615,812 + +0.2 1,615,812 + +1.0 1,615,812 + -1.1 1,615,856 + PGA1_c15530 0.16 -1.9 1,615,882 - PGA1_c15530 0.20 +0.5 1,615,888 + PGA1_c15530 0.21 +0.2 1,615,888 + PGA1_c15530 0.21 +0.1 1,615,896 - PGA1_c15530 0.23 +1.3 1,615,971 - PGA1_c15530 0.35 +0.4 1,615,979 - PGA1_c15530 0.37 +0.5 1,615,979 - PGA1_c15530 0.37 -0.1 1,615,979 - PGA1_c15530 0.37 -0.6 1,615,980 - PGA1_c15530 0.37 +0.4 1,616,111 - PGA1_c15530 0.59 -0.5 1,616,313 + +0.7 1,616,322 + -3.3 1,616,364 + -0.2 1,616,372 - -0.0 1,616,395 + -0.1 1,616,465 + PGA1_c15540 0.42 +0.0 1,616,470 + PGA1_c15540 0.45 -0.8 1,616,478 - PGA1_c15540 0.49 -0.1 1,616,512 + PGA1_c15540 0.67 +0.4 1,616,512 + PGA1_c15540 0.67 +0.4 1,616,512 + PGA1_c15540 0.67 -0.1 1,616,512 + PGA1_c15540 0.67 -1.3 1,616,512 + PGA1_c15540 0.67 -0.7 1,616,512 + PGA1_c15540 0.67 -0.2 1,616,520 - PGA1_c15540 0.72 +0.5 1,616,520 - PGA1_c15540 0.72 +0.1 1,616,520 - PGA1_c15540 0.72 -0.4 1,616,520 - PGA1_c15540 0.72 -1.5 1,616,520 - PGA1_c15540 0.72 -0.4 1,616,520 - PGA1_c15540 0.72 -1.9 1,616,520 - PGA1_c15540 0.72 +0.1 1,616,520 - PGA1_c15540 0.72 -0.5 1,616,520 - PGA1_c15540 0.72 +0.0 1,616,532 + PGA1_c15540 0.78 -0.1 1,616,532 - PGA1_c15540 0.78 +0.4 1,616,540 - PGA1_c15540 0.82 -1.6 1,616,549 + PGA1_c15540 0.87 +0.5 1,616,573 + -0.3 1,616,586 + +1.2 1,616,586 + +0.2 1,616,594 - -2.6 1,616,594 - -0.6 1,616,624 + +0.0 1,616,653 + -1.4
Or see this region's nucleotide sequence