Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13440 and PGA1_c13450 are separated by 564 nucleotides PGA1_c13450 and PGA1_c13460 are separated by 511 nucleotides PGA1_c13460 and PGA1_c13470 are separated by 93 nucleotides
PGA1_c13440: PGA1_c13440 - C4-dicarboxylate transport transcriptional regulatory protein DctD, at 1,387,981 to 1,389,318
_c13440
PGA1_c13450: PGA1_c13450 - ribonuclease E, at 1,389,883 to 1,392,819
_c13450
PGA1_c13460: PGA1_c13460 - putative sulfurtransferase, at 1,393,331 to 1,393,564
_c13460
PGA1_c13470: PGA1_c13470 - cytochrome C biogenesis protein, transmembrane region, at 1,393,658 to 1,394,410
_c13470
Position (kb)
1389
1390
1391
1392
1393 Strain fitness (log2 ratio)
-1
0
1 at 1389.319 kb on + strand at 1389.319 kb on + strand at 1389.319 kb on + strand at 1389.327 kb on - strand at 1389.327 kb on - strand at 1389.332 kb on - strand at 1389.342 kb on - strand at 1389.349 kb on - strand at 1389.355 kb on + strand at 1389.416 kb on - strand at 1392.177 kb on - strand, within PGA1_c13450 at 1392.177 kb on - strand, within PGA1_c13450 at 1392.429 kb on + strand, within PGA1_c13450 at 1392.720 kb on + strand at 1392.880 kb on + strand at 1392.906 kb on - strand at 1392.992 kb on - strand at 1393.177 kb on + strand at 1393.177 kb on + strand at 1393.185 kb on - strand at 1393.185 kb on - strand at 1393.201 kb on + strand at 1393.209 kb on + strand at 1393.217 kb on - strand at 1393.227 kb on + strand at 1393.355 kb on + strand, within PGA1_c13460 at 1393.390 kb on + strand, within PGA1_c13460 at 1393.398 kb on - strand, within PGA1_c13460 at 1393.398 kb on - strand, within PGA1_c13460 at 1393.528 kb on + strand, within PGA1_c13460 at 1393.528 kb on + strand, within PGA1_c13460 at 1393.528 kb on + strand, within PGA1_c13460 at 1393.528 kb on + strand, within PGA1_c13460 at 1393.528 kb on + strand, within PGA1_c13460 at 1393.536 kb on - strand, within PGA1_c13460 at 1393.536 kb on - strand, within PGA1_c13460 at 1393.536 kb on - strand, within PGA1_c13460 at 1393.536 kb on - strand, within PGA1_c13460 at 1393.567 kb on - strand at 1393.585 kb on + strand at 1393.585 kb on + strand at 1393.595 kb on + strand at 1393.603 kb on - strand at 1393.603 kb on - strand at 1393.604 kb on + strand at 1393.604 kb on + strand at 1393.604 kb on + strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.643 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 1,389,319 + -0.8 1,389,319 + -0.6 1,389,319 + -0.1 1,389,327 - -1.4 1,389,327 - +0.1 1,389,332 - -0.6 1,389,342 - -0.7 1,389,349 - -0.9 1,389,355 + +0.4 1,389,416 - -0.2 1,392,177 - PGA1_c13450 0.78 -1.1 1,392,177 - PGA1_c13450 0.78 -0.4 1,392,429 + PGA1_c13450 0.87 +0.4 1,392,720 + -1.2 1,392,880 + -0.1 1,392,906 - -0.4 1,392,992 - +0.4 1,393,177 + -0.0 1,393,177 + -0.1 1,393,185 - -0.1 1,393,185 - -0.7 1,393,201 + +0.1 1,393,209 + -0.7 1,393,217 - -0.1 1,393,227 + +0.4 1,393,355 + PGA1_c13460 0.10 +0.4 1,393,390 + PGA1_c13460 0.25 -0.3 1,393,398 - PGA1_c13460 0.29 +0.4 1,393,398 - PGA1_c13460 0.29 -0.3 1,393,528 + PGA1_c13460 0.84 +1.1 1,393,528 + PGA1_c13460 0.84 -0.4 1,393,528 + PGA1_c13460 0.84 +0.9 1,393,528 + PGA1_c13460 0.84 +0.4 1,393,528 + PGA1_c13460 0.84 +0.9 1,393,536 - PGA1_c13460 0.88 -0.7 1,393,536 - PGA1_c13460 0.88 -0.2 1,393,536 - PGA1_c13460 0.88 +0.5 1,393,536 - PGA1_c13460 0.88 -0.7 1,393,567 - -0.0 1,393,585 + +0.7 1,393,585 + -0.6 1,393,595 + +0.1 1,393,603 - -0.4 1,393,603 - -0.1 1,393,604 + +0.2 1,393,604 + -0.0 1,393,604 + -0.3 1,393,612 - -0.0 1,393,612 - -0.3 1,393,612 - +0.3 1,393,612 - +0.3 1,393,612 - -0.7 1,393,612 - -0.3 1,393,642 + +0.4 1,393,642 + -1.4 1,393,642 + +0.5 1,393,642 + -1.3 1,393,642 + -0.9 1,393,642 + -0.1 1,393,643 + +1.1
Or see this region's nucleotide sequence