Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01250 and PGA1_c01260 are separated by 333 nucleotides PGA1_c01260 and PGA1_c01270 are separated by 3 nucleotides PGA1_c01270 and PGA1_c01280 are separated by 67 nucleotides
PGA1_c01250: PGA1_c01250 - electron transfer flavoprotein subunit beta, at 116,927 to 117,685
_c01250
PGA1_c01260: PGA1_c01260 - putative cobalamin adenosyltransferase, at 118,019 to 118,591
_c01260
PGA1_c01270: PGA1_c01270 - Hypoxia induced protein conserved region., at 118,595 to 118,801
_c01270
PGA1_c01280: PGA1_c01280 - short-chain dehydrogenase/reductase, at 118,869 to 119,699
_c01280
Position (kb) 118
119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 117.836 kb on + strand at 117.872 kb on + strand at 117.909 kb on - strand at 118.072 kb on - strand at 118.237 kb on + strand, within PGA1_c01260 at 118.347 kb on + strand, within PGA1_c01260 at 118.367 kb on + strand, within PGA1_c01260 at 118.508 kb on + strand, within PGA1_c01260 at 118.594 kb on - strand at 118.602 kb on + strand at 118.618 kb on + strand, within PGA1_c01270 at 118.618 kb on + strand, within PGA1_c01270 at 118.634 kb on + strand, within PGA1_c01270 at 118.634 kb on + strand, within PGA1_c01270 at 118.642 kb on - strand, within PGA1_c01270 at 118.642 kb on - strand, within PGA1_c01270 at 118.642 kb on - strand, within PGA1_c01270 at 118.721 kb on + strand, within PGA1_c01270 at 118.829 kb on + strand at 118.949 kb on - strand at 118.949 kb on - strand at 119.004 kb on + strand, within PGA1_c01280 at 119.012 kb on - strand, within PGA1_c01280 at 119.017 kb on + strand, within PGA1_c01280 at 119.027 kb on - strand, within PGA1_c01280 at 119.041 kb on + strand, within PGA1_c01280 at 119.062 kb on - strand, within PGA1_c01280 at 119.202 kb on + strand, within PGA1_c01280 at 119.224 kb on + strand, within PGA1_c01280 at 119.232 kb on - strand, within PGA1_c01280 at 119.267 kb on + strand, within PGA1_c01280 at 119.329 kb on - strand, within PGA1_c01280 at 119.348 kb on + strand, within PGA1_c01280 at 119.361 kb on + strand, within PGA1_c01280 at 119.361 kb on + strand, within PGA1_c01280 at 119.432 kb on - strand, within PGA1_c01280 at 119.466 kb on - strand, within PGA1_c01280 at 119.493 kb on + strand, within PGA1_c01280 at 119.493 kb on + strand, within PGA1_c01280 at 119.532 kb on - strand, within PGA1_c01280 at 119.535 kb on + strand, within PGA1_c01280 at 119.543 kb on - strand, within PGA1_c01280 at 119.564 kb on - strand, within PGA1_c01280
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 117,836 + -2.1 117,872 + -2.6 117,909 - +2.1 118,072 - -1.8 118,237 + PGA1_c01260 0.38 -1.3 118,347 + PGA1_c01260 0.57 -1.7 118,367 + PGA1_c01260 0.61 -2.1 118,508 + PGA1_c01260 0.85 -1.3 118,594 - -0.1 118,602 + +0.6 118,618 + PGA1_c01270 0.11 -0.5 118,618 + PGA1_c01270 0.11 -0.5 118,634 + PGA1_c01270 0.19 -0.9 118,634 + PGA1_c01270 0.19 +0.6 118,642 - PGA1_c01270 0.23 +0.3 118,642 - PGA1_c01270 0.23 +0.4 118,642 - PGA1_c01270 0.23 -1.2 118,721 + PGA1_c01270 0.61 -0.8 118,829 + -0.8 118,949 - -0.9 118,949 - -0.9 119,004 + PGA1_c01280 0.16 -0.0 119,012 - PGA1_c01280 0.17 -0.4 119,017 + PGA1_c01280 0.18 -0.5 119,027 - PGA1_c01280 0.19 -0.6 119,041 + PGA1_c01280 0.21 +0.5 119,062 - PGA1_c01280 0.23 -1.3 119,202 + PGA1_c01280 0.40 +0.1 119,224 + PGA1_c01280 0.43 -0.3 119,232 - PGA1_c01280 0.44 -0.7 119,267 + PGA1_c01280 0.48 -0.3 119,329 - PGA1_c01280 0.55 +0.1 119,348 + PGA1_c01280 0.58 +0.1 119,361 + PGA1_c01280 0.59 +0.2 119,361 + PGA1_c01280 0.59 +0.3 119,432 - PGA1_c01280 0.68 -0.5 119,466 - PGA1_c01280 0.72 -0.4 119,493 + PGA1_c01280 0.75 +0.3 119,493 + PGA1_c01280 0.75 -0.4 119,532 - PGA1_c01280 0.80 -0.3 119,535 + PGA1_c01280 0.80 +0.0 119,543 - PGA1_c01280 0.81 -0.5 119,564 - PGA1_c01280 0.84 -0.0
Or see this region's nucleotide sequence