Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11850 and PGA1_c11860 are separated by 78 nucleotides PGA1_c11860 and PGA1_c11870 are separated by 79 nucleotides PGA1_c11870 and PGA1_c11880 are separated by 170 nucleotides
PGA1_c11850: PGA1_c11850 - Phage shock protein A (IM30), suppresses sigma54-dependent transcription, at 1,228,381 to 1,229,058
_c11850
PGA1_c11860: PGA1_c11860 - Uncharacterized protein conserved in bacteria, at 1,229,137 to 1,229,421
_c11860
PGA1_c11870: PGA1_c11870 - serine hydroxymethyltransferase GlyA, at 1,229,501 to 1,230,799
_c11870
PGA1_c11880: PGA1_c11880 - putative ATP-NAD kinase, at 1,230,970 to 1,231,731
_c11880
Position (kb)
1229
1230
1231 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1228.503 kb on - strand, within PGA1_c11850 at 1228.503 kb on - strand, within PGA1_c11850 at 1228.553 kb on + strand, within PGA1_c11850 at 1228.610 kb on - strand, within PGA1_c11850 at 1228.732 kb on - strand, within PGA1_c11850 at 1228.820 kb on - strand, within PGA1_c11850 at 1228.820 kb on - strand, within PGA1_c11850 at 1228.864 kb on - strand, within PGA1_c11850 at 1228.866 kb on + strand, within PGA1_c11850 at 1228.879 kb on - strand, within PGA1_c11850 at 1228.913 kb on + strand, within PGA1_c11850 at 1228.986 kb on - strand, within PGA1_c11850 at 1229.037 kb on - strand at 1229.134 kb on - strand at 1229.174 kb on + strand, within PGA1_c11860 at 1229.174 kb on + strand, within PGA1_c11860 at 1229.182 kb on - strand, within PGA1_c11860 at 1229.202 kb on - strand, within PGA1_c11860 at 1229.262 kb on + strand, within PGA1_c11860 at 1229.262 kb on + strand, within PGA1_c11860 at 1229.262 kb on + strand, within PGA1_c11860 at 1229.269 kb on + strand, within PGA1_c11860 at 1229.270 kb on - strand, within PGA1_c11860 at 1229.270 kb on - strand, within PGA1_c11860 at 1229.291 kb on + strand, within PGA1_c11860 at 1229.296 kb on + strand, within PGA1_c11860 at 1229.299 kb on - strand, within PGA1_c11860 at 1229.299 kb on - strand, within PGA1_c11860 at 1229.299 kb on - strand, within PGA1_c11860 at 1229.301 kb on + strand, within PGA1_c11860 at 1229.301 kb on + strand, within PGA1_c11860 at 1229.301 kb on + strand, within PGA1_c11860 at 1229.309 kb on - strand, within PGA1_c11860 at 1229.400 kb on + strand at 1229.408 kb on - strand at 1229.409 kb on - strand at 1229.415 kb on + strand at 1229.452 kb on - strand at 1229.506 kb on - strand at 1229.507 kb on - strand at 1229.561 kb on + strand at 1229.582 kb on - strand at 1229.674 kb on - strand, within PGA1_c11870 at 1229.682 kb on - strand, within PGA1_c11870 at 1229.692 kb on - strand, within PGA1_c11870 at 1229.765 kb on + strand, within PGA1_c11870 at 1229.765 kb on + strand, within PGA1_c11870 at 1229.765 kb on + strand, within PGA1_c11870 at 1229.773 kb on - strand, within PGA1_c11870 at 1229.773 kb on - strand, within PGA1_c11870 at 1229.773 kb on - strand, within PGA1_c11870 at 1229.773 kb on - strand, within PGA1_c11870 at 1229.773 kb on - strand, within PGA1_c11870 at 1229.773 kb on - strand, within PGA1_c11870 at 1229.773 kb on - strand, within PGA1_c11870 at 1229.773 kb on - strand, within PGA1_c11870 at 1229.792 kb on + strand, within PGA1_c11870 at 1229.792 kb on + strand, within PGA1_c11870 at 1229.807 kb on - strand, within PGA1_c11870 at 1229.829 kb on - strand, within PGA1_c11870 at 1229.865 kb on + strand, within PGA1_c11870 at 1229.873 kb on - strand, within PGA1_c11870 at 1229.981 kb on + strand, within PGA1_c11870 at 1229.999 kb on - strand, within PGA1_c11870 at 1230.001 kb on - strand, within PGA1_c11870 at 1230.091 kb on + strand, within PGA1_c11870 at 1230.126 kb on + strand, within PGA1_c11870 at 1230.126 kb on + strand, within PGA1_c11870 at 1230.126 kb on + strand, within PGA1_c11870 at 1230.134 kb on - strand, within PGA1_c11870 at 1230.134 kb on - strand, within PGA1_c11870 at 1230.134 kb on - strand, within PGA1_c11870 at 1230.351 kb on + strand, within PGA1_c11870 at 1230.395 kb on - strand, within PGA1_c11870 at 1230.410 kb on + strand, within PGA1_c11870 at 1230.410 kb on + strand, within PGA1_c11870 at 1230.410 kb on + strand, within PGA1_c11870 at 1230.418 kb on - strand, within PGA1_c11870 at 1230.418 kb on - strand, within PGA1_c11870 at 1230.440 kb on - strand, within PGA1_c11870 at 1230.449 kb on - strand, within PGA1_c11870 at 1230.486 kb on + strand, within PGA1_c11870 at 1230.494 kb on - strand, within PGA1_c11870 at 1230.620 kb on + strand, within PGA1_c11870 at 1230.625 kb on + strand, within PGA1_c11870 at 1230.625 kb on + strand, within PGA1_c11870 at 1230.633 kb on - strand, within PGA1_c11870 at 1230.633 kb on - strand, within PGA1_c11870 at 1230.733 kb on + strand at 1230.733 kb on + strand at 1230.741 kb on - strand at 1230.741 kb on - strand at 1230.741 kb on - strand at 1230.867 kb on - strand at 1230.867 kb on - strand at 1230.898 kb on + strand at 1230.964 kb on + strand at 1230.972 kb on - strand at 1231.745 kb on + strand at 1231.745 kb on + strand at 1231.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 1,228,503 - PGA1_c11850 0.18 -2.2 1,228,503 - PGA1_c11850 0.18 +0.9 1,228,553 + PGA1_c11850 0.25 -1.3 1,228,610 - PGA1_c11850 0.34 +0.8 1,228,732 - PGA1_c11850 0.52 +0.6 1,228,820 - PGA1_c11850 0.65 +0.2 1,228,820 - PGA1_c11850 0.65 +0.2 1,228,864 - PGA1_c11850 0.71 -0.9 1,228,866 + PGA1_c11850 0.72 +1.3 1,228,879 - PGA1_c11850 0.73 -0.8 1,228,913 + PGA1_c11850 0.78 +1.7 1,228,986 - PGA1_c11850 0.89 +1.3 1,229,037 - +0.0 1,229,134 - +1.0 1,229,174 + PGA1_c11860 0.13 +1.0 1,229,174 + PGA1_c11860 0.13 +2.5 1,229,182 - PGA1_c11860 0.16 -0.4 1,229,202 - PGA1_c11860 0.23 -0.7 1,229,262 + PGA1_c11860 0.44 -0.8 1,229,262 + PGA1_c11860 0.44 +0.5 1,229,262 + PGA1_c11860 0.44 -0.0 1,229,269 + PGA1_c11860 0.46 -0.2 1,229,270 - PGA1_c11860 0.47 -2.1 1,229,270 - PGA1_c11860 0.47 +0.2 1,229,291 + PGA1_c11860 0.54 -0.7 1,229,296 + PGA1_c11860 0.56 -2.1 1,229,299 - PGA1_c11860 0.57 -0.4 1,229,299 - PGA1_c11860 0.57 +0.6 1,229,299 - PGA1_c11860 0.57 -0.7 1,229,301 + PGA1_c11860 0.58 -1.2 1,229,301 + PGA1_c11860 0.58 -1.5 1,229,301 + PGA1_c11860 0.58 -1.3 1,229,309 - PGA1_c11860 0.60 +0.6 1,229,400 + +0.8 1,229,408 - +0.0 1,229,409 - +0.4 1,229,415 + +0.7 1,229,452 - -1.2 1,229,506 - -0.2 1,229,507 - +0.3 1,229,561 + -3.3 1,229,582 - -0.8 1,229,674 - PGA1_c11870 0.13 -3.5 1,229,682 - PGA1_c11870 0.14 -2.2 1,229,692 - PGA1_c11870 0.15 -2.2 1,229,765 + PGA1_c11870 0.20 +0.1 1,229,765 + PGA1_c11870 0.20 -2.5 1,229,765 + PGA1_c11870 0.20 -1.5 1,229,773 - PGA1_c11870 0.21 -1.4 1,229,773 - PGA1_c11870 0.21 -0.8 1,229,773 - PGA1_c11870 0.21 -1.8 1,229,773 - PGA1_c11870 0.21 -3.0 1,229,773 - PGA1_c11870 0.21 -2.3 1,229,773 - PGA1_c11870 0.21 -2.6 1,229,773 - PGA1_c11870 0.21 -1.1 1,229,773 - PGA1_c11870 0.21 -1.3 1,229,792 + PGA1_c11870 0.22 -2.8 1,229,792 + PGA1_c11870 0.22 -1.7 1,229,807 - PGA1_c11870 0.24 -3.7 1,229,829 - PGA1_c11870 0.25 +0.5 1,229,865 + PGA1_c11870 0.28 -3.1 1,229,873 - PGA1_c11870 0.29 -3.4 1,229,981 + PGA1_c11870 0.37 -0.1 1,229,999 - PGA1_c11870 0.38 -2.2 1,230,001 - PGA1_c11870 0.38 -3.0 1,230,091 + PGA1_c11870 0.45 -2.2 1,230,126 + PGA1_c11870 0.48 -4.0 1,230,126 + PGA1_c11870 0.48 -1.8 1,230,126 + PGA1_c11870 0.48 -3.8 1,230,134 - PGA1_c11870 0.49 -3.4 1,230,134 - PGA1_c11870 0.49 -0.9 1,230,134 - PGA1_c11870 0.49 -3.3 1,230,351 + PGA1_c11870 0.65 -1.1 1,230,395 - PGA1_c11870 0.69 -1.7 1,230,410 + PGA1_c11870 0.70 -3.9 1,230,410 + PGA1_c11870 0.70 -3.5 1,230,410 + PGA1_c11870 0.70 -1.8 1,230,418 - PGA1_c11870 0.71 -3.1 1,230,418 - PGA1_c11870 0.71 -2.0 1,230,440 - PGA1_c11870 0.72 -2.3 1,230,449 - PGA1_c11870 0.73 -3.0 1,230,486 + PGA1_c11870 0.76 -2.5 1,230,494 - PGA1_c11870 0.76 -3.0 1,230,620 + PGA1_c11870 0.86 -1.2 1,230,625 + PGA1_c11870 0.87 -1.8 1,230,625 + PGA1_c11870 0.87 -4.2 1,230,633 - PGA1_c11870 0.87 -3.0 1,230,633 - PGA1_c11870 0.87 -4.1 1,230,733 + -3.2 1,230,733 + -2.3 1,230,741 - -2.1 1,230,741 - -2.5 1,230,741 - -2.2 1,230,867 - -2.8 1,230,867 - -0.8 1,230,898 + -0.8 1,230,964 + +0.2 1,230,972 - +0.3 1,231,745 + -0.3 1,231,745 + +0.3 1,231,753 - +0.5
Or see this region's nucleotide sequence