Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11700

Experiment: Carbon source L-Citrulline 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source L-Citrulline 5 mM
1,210,755	-		PGA1_c11680	0.48	-0.8
1,210,887	+		PGA1_c11680	0.73	-0.1
1,210,887	+		PGA1_c11680	0.73	-0.8
1,210,900	-		PGA1_c11680	0.75	-0.0
1,210,951	+		PGA1_c11680	0.85	-0.6
1,210,968	-		PGA1_c11680	0.88	+0.5
1,210,996	-				+0.4
1,211,027	+				-0.6
1,211,032	+				-0.0
1,211,065	+				+1.1
1,211,073	-				-0.1
1,211,073	-				+0.5
1,211,073	-				+0.6
1,211,089	+				-0.4
1,211,229	-		PGA1_c11690	0.30	+0.2
1,211,261	+		PGA1_c11690	0.36	-0.3
1,211,269	-		PGA1_c11690	0.37	+0.2
1,211,333	-		PGA1_c11690	0.49	-1.9
1,211,339	+		PGA1_c11690	0.51	+0.0
1,211,347	-		PGA1_c11690	0.52	+0.3
1,211,366	-		PGA1_c11690	0.56	-0.1
1,211,407	+		PGA1_c11690	0.63	-0.4
1,211,407	+		PGA1_c11690	0.63	-1.2
1,211,415	+		PGA1_c11690	0.65	+0.7
1,211,415	+		PGA1_c11690	0.65	-2.4
1,211,417	+		PGA1_c11690	0.65	+1.1
1,211,425	-		PGA1_c11690	0.67	+0.4
1,211,430	-		PGA1_c11690	0.68	+2.1
1,211,430	-		PGA1_c11690	0.68	-0.2
1,211,442	+		PGA1_c11690	0.70	-1.3
1,211,443	-		PGA1_c11690	0.70	-0.2
1,211,533	+		PGA1_c11690	0.87	-0.9
1,211,569	+				-0.1
1,211,569	+				+1.5
1,211,573	-				+2.1
1,211,577	-				+0.8
1,211,577	-				-0.1
1,211,577	-				+0.6
1,211,578	-				-0.3
1,211,589	+				-0.3
1,211,628	-				+0.8
1,211,709	-				+0.4
1,211,799	+				-0.9
1,211,804	+				-2.7
1,211,807	-				+0.2
1,211,812	-				-3.1
1,211,812	-				-1.9
1,211,812	-				-0.6
1,211,829	-		PGA1_c11700	0.10	-3.1
1,211,838	+		PGA1_c11700	0.11	-1.9
1,211,858	+		PGA1_c11700	0.14	-2.9
1,211,866	-		PGA1_c11700	0.15	-2.3
1,211,866	-		PGA1_c11700	0.15	-2.1
1,211,883	-		PGA1_c11700	0.17	-4.3
1,211,959	-		PGA1_c11700	0.25	-4.3
1,211,989	+		PGA1_c11700	0.29	-1.6
1,212,048	-		PGA1_c11700	0.36	-0.3
1,212,131	-		PGA1_c11700	0.45	-1.2
1,212,147	+		PGA1_c11700	0.47	-3.5
1,212,147	+		PGA1_c11700	0.47	-3.7
1,212,147	+		PGA1_c11700	0.47	-1.9
1,212,147	+		PGA1_c11700	0.47	-2.2
1,212,155	-		PGA1_c11700	0.48	-2.6
1,212,155	-		PGA1_c11700	0.48	-1.5
1,212,155	-		PGA1_c11700	0.48	-3.0
1,212,181	-		PGA1_c11700	0.51	-2.0
1,212,273	-		PGA1_c11700	0.61	-3.1
1,212,361	-		PGA1_c11700	0.71	-1.1
1,212,396	+		PGA1_c11700	0.76	-1.4
1,212,396	+		PGA1_c11700	0.76	-3.6
1,212,396	+		PGA1_c11700	0.76	-2.7
1,212,396	+		PGA1_c11700	0.76	-3.3
1,212,396	+		PGA1_c11700	0.76	-1.7
1,212,396	+		PGA1_c11700	0.76	-2.7
1,212,404	-		PGA1_c11700	0.76	-1.7
1,212,404	-		PGA1_c11700	0.76	-4.1
1,212,404	-		PGA1_c11700	0.76	-0.6
1,212,404	-		PGA1_c11700	0.76	-4.3
1,212,404	-		PGA1_c11700	0.76	-1.5
1,212,404	-		PGA1_c11700	0.76	-2.2
1,212,404	-		PGA1_c11700	0.76	-2.0
1,212,404	-		PGA1_c11700	0.76	-3.3
1,212,437	-		PGA1_c11700	0.80	-2.8
1,212,525	+				-4.7
1,212,525	+				-2.0
1,212,525	+				-3.7
1,212,525	+				-3.3
1,212,533	-				-1.4
1,212,533	-				-0.9
1,212,602	-				-1.6
1,212,636	-				-1.3
1,212,687	+				-2.6
1,212,782	+				-2.2
1,212,790	-				-3.7
1,212,846	+		PGA1_c11710	0.16	-0.9
1,212,932	+		PGA1_c11710	0.25	-0.9
1,212,932	+		PGA1_c11710	0.25	-3.3
1,212,932	+		PGA1_c11710	0.25	-1.5
1,212,940	-		PGA1_c11710	0.26	-2.0
1,212,940	-		PGA1_c11710	0.26	-1.7
1,213,043	-		PGA1_c11710	0.37	-1.6
1,213,050	+		PGA1_c11710	0.38	-2.0
1,213,068	-		PGA1_c11710	0.40	-2.3
1,213,097	-		PGA1_c11710	0.43	-1.1
1,213,118	+		PGA1_c11710	0.46	-1.9
1,213,204	-		PGA1_c11710	0.55	-1.1
1,213,273	+		PGA1_c11710	0.63	-2.0
1,213,281	+		PGA1_c11710	0.64	-1.8
1,213,281	-		PGA1_c11710	0.64	-2.9
1,213,346	+		PGA1_c11710	0.71	-2.2
1,213,354	-		PGA1_c11710	0.72	-3.3
1,213,433	+		PGA1_c11710	0.80	-1.4
1,213,438	+		PGA1_c11710	0.81	-2.2
1,213,479	-		PGA1_c11710	0.85	-1.9
1,213,497	+		PGA1_c11710	0.87	-1.6
1,213,497	-		PGA1_c11710	0.87	-2.5
1,213,497	-		PGA1_c11710	0.87	-3.4
1,213,510	+		PGA1_c11710	0.89	-2.7
1,213,573	-				-1.9
1,213,574	+				+0.9