Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02120

Experiment: Carbon source L-Citrulline 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02100 and PGA1_262p02110 overlap by 4 nucleotidesPGA1_262p02110 and PGA1_262p02120 overlap by 17 nucleotidesPGA1_262p02120 and PGA1_262p02130 are separated by 1 nucleotidesPGA1_262p02130 and PGA1_262p02140 overlap by 4 nucleotides PGA1_262p02100: PGA1_262p02100 - methyltransferase, cheR type, at 226,898 to 227,761 _262p02100 PGA1_262p02110: PGA1_262p02110 - putative chemotaxis protein CheW, at 227,758 to 228,246 _262p02110 PGA1_262p02120: PGA1_262p02120 - chemotaxis protein CheA, at 228,230 to 230,365 _262p02120 PGA1_262p02130: PGA1_262p02130 - response regulator receiver, at 230,367 to 230,741 _262p02130 PGA1_262p02140: PGA1_262p02140 - hypothetical protein, at 230,738 to 231,142 _262p02140 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2 3at 227.245 kb on - strand, within PGA1_262p02100at 227.247 kb on + strand, within PGA1_262p02100at 227.339 kb on - strand, within PGA1_262p02100at 227.371 kb on + strand, within PGA1_262p02100at 227.371 kb on - strand, within PGA1_262p02100at 227.371 kb on - strand, within PGA1_262p02100at 227.372 kb on - strand, within PGA1_262p02100at 227.372 kb on - strand, within PGA1_262p02100at 227.397 kb on + strand, within PGA1_262p02100at 227.397 kb on + strand, within PGA1_262p02100at 227.405 kb on - strand, within PGA1_262p02100at 227.405 kb on - strand, within PGA1_262p02100at 227.519 kb on + strand, within PGA1_262p02100at 227.522 kb on + strand, within PGA1_262p02100at 227.548 kb on + strand, within PGA1_262p02100at 227.548 kb on + strand, within PGA1_262p02100at 227.566 kb on - strand, within PGA1_262p02100at 227.662 kb on + strand, within PGA1_262p02100at 227.662 kb on + strand, within PGA1_262p02100at 227.716 kb on + strandat 227.716 kb on + strandat 227.724 kb on - strandat 227.886 kb on + strand, within PGA1_262p02110at 227.887 kb on - strand, within PGA1_262p02110at 227.894 kb on - strand, within PGA1_262p02110at 227.956 kb on - strand, within PGA1_262p02110at 228.050 kb on - strand, within PGA1_262p02110at 228.154 kb on + strand, within PGA1_262p02110at 228.385 kb on + strandat 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.643 kb on + strand, within PGA1_262p02120at 228.648 kb on + strand, within PGA1_262p02120at 228.656 kb on - strand, within PGA1_262p02120at 228.661 kb on - strand, within PGA1_262p02120at 228.673 kb on + strand, within PGA1_262p02120at 228.673 kb on + strand, within PGA1_262p02120at 228.724 kb on - strand, within PGA1_262p02120at 228.728 kb on + strand, within PGA1_262p02120at 228.750 kb on + strand, within PGA1_262p02120at 228.764 kb on + strand, within PGA1_262p02120at 228.772 kb on - strand, within PGA1_262p02120at 228.797 kb on + strand, within PGA1_262p02120at 228.828 kb on - strand, within PGA1_262p02120at 229.034 kb on - strand, within PGA1_262p02120at 229.054 kb on + strand, within PGA1_262p02120at 229.093 kb on + strand, within PGA1_262p02120at 229.169 kb on - strand, within PGA1_262p02120at 229.254 kb on - strand, within PGA1_262p02120at 229.328 kb on - strand, within PGA1_262p02120at 229.395 kb on + strand, within PGA1_262p02120at 229.449 kb on - strand, within PGA1_262p02120at 229.557 kb on + strand, within PGA1_262p02120at 229.560 kb on - strand, within PGA1_262p02120at 229.717 kb on - strand, within PGA1_262p02120at 229.727 kb on - strand, within PGA1_262p02120at 229.727 kb on - strand, within PGA1_262p02120at 229.727 kb on - strand, within PGA1_262p02120at 229.742 kb on + strand, within PGA1_262p02120at 229.771 kb on + strand, within PGA1_262p02120at 229.794 kb on - strand, within PGA1_262p02120at 229.803 kb on - strand, within PGA1_262p02120at 229.807 kb on + strand, within PGA1_262p02120at 229.815 kb on - strand, within PGA1_262p02120at 229.833 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.907 kb on - strand, within PGA1_262p02120at 229.907 kb on - strand, within PGA1_262p02120at 229.907 kb on - strand, within PGA1_262p02120at 229.907 kb on - strand, within PGA1_262p02120at 229.907 kb on - strand, within PGA1_262p02120at 229.958 kb on - strand, within PGA1_262p02120at 230.002 kb on + strand, within PGA1_262p02120at 230.046 kb on - strand, within PGA1_262p02120at 230.268 kb on - strandat 230.268 kb on - strandat 230.268 kb on - strandat 230.268 kb on - strandat 230.268 kb on - strandat 230.292 kb on + strandat 230.300 kb on - strandat 230.477 kb on - strand, within PGA1_262p02130at 230.533 kb on + strand, within PGA1_262p02130at 230.552 kb on + strand, within PGA1_262p02130at 230.552 kb on + strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.597 kb on - strand, within PGA1_262p02130at 230.622 kb on + strand, within PGA1_262p02130at 230.622 kb on + strand, within PGA1_262p02130at 230.630 kb on - strand, within PGA1_262p02130at 230.640 kb on + strand, within PGA1_262p02130at 230.645 kb on - strand, within PGA1_262p02130at 230.655 kb on - strand, within PGA1_262p02130at 230.672 kb on + strand, within PGA1_262p02130at 230.865 kb on - strand, within PGA1_262p02140at 230.875 kb on + strand, within PGA1_262p02140at 230.883 kb on - strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.936 kb on - strand, within PGA1_262p02140at 230.952 kb on + strand, within PGA1_262p02140at 230.979 kb on - strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.989 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.992 kb on + strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.067 kb on - strand, within PGA1_262p02140at 231.075 kb on + strand, within PGA1_262p02140at 231.213 kb on + strandat 231.245 kb on - strandat 231.250 kb on + strandat 231.252 kb on + strandat 231.272 kb on + strandat 231.279 kb on - strandat 231.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 10 mM
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227,245 - PGA1_262p02100 0.40 +0.8
227,247 + PGA1_262p02100 0.40 -1.6
227,339 - PGA1_262p02100 0.51 -0.3
227,371 + PGA1_262p02100 0.55 -1.6
227,371 - PGA1_262p02100 0.55 -0.6
227,371 - PGA1_262p02100 0.55 -0.1
227,372 - PGA1_262p02100 0.55 -0.5
227,372 - PGA1_262p02100 0.55 +1.8
227,397 + PGA1_262p02100 0.58 +1.0
227,397 + PGA1_262p02100 0.58 +0.3
227,405 - PGA1_262p02100 0.59 +1.0
227,405 - PGA1_262p02100 0.59 -0.3
227,519 + PGA1_262p02100 0.72 +1.4
227,522 + PGA1_262p02100 0.72 -0.5
227,548 + PGA1_262p02100 0.75 +0.2
227,548 + PGA1_262p02100 0.75 -0.0
227,566 - PGA1_262p02100 0.77 +0.4
227,662 + PGA1_262p02100 0.88 +1.2
227,662 + PGA1_262p02100 0.88 +0.6
227,716 + -1.6
227,716 + -0.9
227,724 - -1.5
227,886 + PGA1_262p02110 0.26 -0.5
227,887 - PGA1_262p02110 0.26 +1.0
227,894 - PGA1_262p02110 0.28 +0.3
227,956 - PGA1_262p02110 0.40 -1.0
228,050 - PGA1_262p02110 0.60 -0.8
228,154 + PGA1_262p02110 0.81 +0.4
228,385 + -0.3
228,504 + PGA1_262p02120 0.13 +0.7
228,504 + PGA1_262p02120 0.13 -0.1
228,504 + PGA1_262p02120 0.13 -0.6
228,504 + PGA1_262p02120 0.13 +0.6
228,504 + PGA1_262p02120 0.13 -0.1
228,504 + PGA1_262p02120 0.13 +0.2
228,504 + PGA1_262p02120 0.13 -0.4
228,504 + PGA1_262p02120 0.13 +0.0
228,504 + PGA1_262p02120 0.13 +0.6
228,504 + PGA1_262p02120 0.13 -0.6
228,512 - PGA1_262p02120 0.13 -1.1
228,512 - PGA1_262p02120 0.13 -0.8
228,512 - PGA1_262p02120 0.13 +1.2
228,512 - PGA1_262p02120 0.13 +0.2
228,512 - PGA1_262p02120 0.13 -0.1
228,512 - PGA1_262p02120 0.13 -1.2
228,512 - PGA1_262p02120 0.13 +0.9
228,512 - PGA1_262p02120 0.13 +1.0
228,643 + PGA1_262p02120 0.19 +0.6
228,648 + PGA1_262p02120 0.20 -0.4
228,656 - PGA1_262p02120 0.20 +0.2
228,661 - PGA1_262p02120 0.20 +0.2
228,673 + PGA1_262p02120 0.21 +0.8
228,673 + PGA1_262p02120 0.21 -0.4
228,724 - PGA1_262p02120 0.23 -1.0
228,728 + PGA1_262p02120 0.23 +0.7
228,750 + PGA1_262p02120 0.24 -0.2
228,764 + PGA1_262p02120 0.25 +0.4
228,772 - PGA1_262p02120 0.25 +1.3
228,797 + PGA1_262p02120 0.27 +0.6
228,828 - PGA1_262p02120 0.28 +3.1
229,034 - PGA1_262p02120 0.38 +0.1
229,054 + PGA1_262p02120 0.39 +0.6
229,093 + PGA1_262p02120 0.40 -0.5
229,169 - PGA1_262p02120 0.44 +0.6
229,254 - PGA1_262p02120 0.48 -0.7
229,328 - PGA1_262p02120 0.51 -0.5
229,395 + PGA1_262p02120 0.55 +0.5
229,449 - PGA1_262p02120 0.57 -0.1
229,557 + PGA1_262p02120 0.62 +0.8
229,560 - PGA1_262p02120 0.62 +0.5
229,717 - PGA1_262p02120 0.70 -0.3
229,727 - PGA1_262p02120 0.70 -1.4
229,727 - PGA1_262p02120 0.70 +1.2
229,727 - PGA1_262p02120 0.70 +1.7
229,742 + PGA1_262p02120 0.71 -1.0
229,771 + PGA1_262p02120 0.72 +1.2
229,794 - PGA1_262p02120 0.73 -0.4
229,803 - PGA1_262p02120 0.74 -2.0
229,807 + PGA1_262p02120 0.74 -1.2
229,815 - PGA1_262p02120 0.74 -1.5
229,833 + PGA1_262p02120 0.75 +0.1
229,899 + PGA1_262p02120 0.78 +0.1
229,899 + PGA1_262p02120 0.78 -1.3
229,899 + PGA1_262p02120 0.78 -0.2
229,899 + PGA1_262p02120 0.78 -0.1
229,899 + PGA1_262p02120 0.78 +1.3
229,899 + PGA1_262p02120 0.78 -1.2
229,899 + PGA1_262p02120 0.78 -1.3
229,907 - PGA1_262p02120 0.79 +1.4
229,907 - PGA1_262p02120 0.79 +0.3
229,907 - PGA1_262p02120 0.79 +0.3
229,907 - PGA1_262p02120 0.79 -0.0
229,907 - PGA1_262p02120 0.79 +1.3
229,958 - PGA1_262p02120 0.81 +0.6
230,002 + PGA1_262p02120 0.83 -0.3
230,046 - PGA1_262p02120 0.85 -2.3
230,268 - +0.9
230,268 - -0.0
230,268 - -0.1
230,268 - -2.5
230,268 - -0.1
230,292 + -0.7
230,300 - +1.6
230,477 - PGA1_262p02130 0.29 -0.4
230,533 + PGA1_262p02130 0.44 +0.9
230,552 + PGA1_262p02130 0.49 +0.2
230,552 + PGA1_262p02130 0.49 +1.1
230,560 - PGA1_262p02130 0.51 -1.8
230,560 - PGA1_262p02130 0.51 -0.3
230,560 - PGA1_262p02130 0.51 +0.3
230,560 - PGA1_262p02130 0.51 -0.7
230,560 - PGA1_262p02130 0.51 +0.2
230,597 - PGA1_262p02130 0.61 -0.3
230,622 + PGA1_262p02130 0.68 -0.6
230,622 + PGA1_262p02130 0.68 +0.1
230,630 - PGA1_262p02130 0.70 +0.7
230,640 + PGA1_262p02130 0.73 +0.6
230,645 - PGA1_262p02130 0.74 +0.2
230,655 - PGA1_262p02130 0.77 +0.8
230,672 + PGA1_262p02130 0.81 -0.3
230,865 - PGA1_262p02140 0.31 -0.5
230,875 + PGA1_262p02140 0.34 +0.8
230,883 - PGA1_262p02140 0.36 +0.6
230,928 + PGA1_262p02140 0.47 +0.0
230,928 + PGA1_262p02140 0.47 -0.7
230,928 + PGA1_262p02140 0.47 +2.0
230,936 - PGA1_262p02140 0.49 -1.5
230,952 + PGA1_262p02140 0.53 +1.2
230,979 - PGA1_262p02140 0.60 +1.1
230,982 + PGA1_262p02140 0.60 +1.0
230,982 + PGA1_262p02140 0.60 +0.3
230,982 + PGA1_262p02140 0.60 +0.4
230,982 + PGA1_262p02140 0.60 -2.0
230,989 - PGA1_262p02140 0.62 +1.2
230,990 - PGA1_262p02140 0.62 -0.4
230,990 - PGA1_262p02140 0.62 -1.1
230,990 - PGA1_262p02140 0.62 +0.2
230,990 - PGA1_262p02140 0.62 +1.1
230,990 - PGA1_262p02140 0.62 +0.2
230,990 - PGA1_262p02140 0.62 -0.9
230,990 - PGA1_262p02140 0.62 -0.1
230,992 + PGA1_262p02140 0.63 +1.2
231,000 - PGA1_262p02140 0.65 -1.1
231,000 - PGA1_262p02140 0.65 +0.4
231,000 - PGA1_262p02140 0.65 -0.1
231,000 - PGA1_262p02140 0.65 +0.2
231,000 - PGA1_262p02140 0.65 +0.3
231,000 - PGA1_262p02140 0.65 -1.7
231,000 - PGA1_262p02140 0.65 +1.3
231,000 - PGA1_262p02140 0.65 -0.8
231,067 - PGA1_262p02140 0.81 -1.2
231,075 + PGA1_262p02140 0.83 +1.3
231,213 + +0.2
231,245 - -0.1
231,250 + +2.0
231,252 + +0.0
231,272 + -1.0
231,279 - +0.6
231,282 - -0.3

Or see this region's nucleotide sequence