Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25870

Experiment: Sucrose (C) and L-Glutamine (N); with MOPS; with PEG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS25860 and PFLU_RS25865 are separated by 106 nucleotidesPFLU_RS25865 and PFLU_RS25870 are separated by 20 nucleotidesPFLU_RS25870 and PFLU_RS25875 are separated by 28 nucleotidesPFLU_RS25875 and PFLU_RS25880 overlap by 4 nucleotides PFLU_RS25860: PFLU_RS25860 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 5,776,093 to 5,776,743 _RS25860 PFLU_RS25865: PFLU_RS25865 - YhbY family RNA-binding protein, at 5,776,850 to 5,777,158 _RS25865 PFLU_RS25870: PFLU_RS25870 - hypothetical protein, at 5,777,179 to 5,777,583 _RS25870 PFLU_RS25875: PFLU_RS25875 - transcription elongation factor GreA, at 5,777,612 to 5,778,088 _RS25875 PFLU_RS25880: PFLU_RS25880 - carbamoyl-phosphate synthase large subunit, at 5,778,085 to 5,781,306 _RS25880 Position (kb) 5777 5778Strain fitness (log2 ratio) -2 -1 0 1 2at 5776.761 kb on - strandat 5776.850 kb on - strandat 5776.850 kb on - strandat 5776.881 kb on - strand, within PFLU_RS25865at 5776.881 kb on - strand, within PFLU_RS25865at 5776.881 kb on - strand, within PFLU_RS25865at 5776.881 kb on - strand, within PFLU_RS25865at 5776.881 kb on - strand, within PFLU_RS25865at 5776.927 kb on + strand, within PFLU_RS25865at 5776.928 kb on - strand, within PFLU_RS25865at 5776.928 kb on - strand, within PFLU_RS25865at 5776.928 kb on - strand, within PFLU_RS25865at 5776.928 kb on - strand, within PFLU_RS25865at 5777.103 kb on - strand, within PFLU_RS25865at 5777.142 kb on - strandat 5777.143 kb on - strandat 5777.143 kb on - strandat 5777.143 kb on - strandat 5777.143 kb on - strandat 5777.143 kb on - strandat 5777.143 kb on - strandat 5777.143 kb on - strandat 5777.143 kb on - strandat 5777.143 kb on - strandat 5777.143 kb on - strandat 5777.157 kb on - strandat 5777.157 kb on - strandat 5777.157 kb on - strandat 5777.157 kb on - strandat 5777.171 kb on - strandat 5777.171 kb on - strandat 5777.171 kb on - strandat 5777.227 kb on + strand, within PFLU_RS25870at 5777.227 kb on + strand, within PFLU_RS25870at 5777.227 kb on + strand, within PFLU_RS25870at 5777.227 kb on + strand, within PFLU_RS25870at 5777.227 kb on + strand, within PFLU_RS25870at 5777.227 kb on + strand, within PFLU_RS25870at 5777.227 kb on + strand, within PFLU_RS25870at 5777.227 kb on + strand, within PFLU_RS25870at 5777.227 kb on + strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.228 kb on - strand, within PFLU_RS25870at 5777.230 kb on - strand, within PFLU_RS25870at 5777.254 kb on + strand, within PFLU_RS25870at 5777.255 kb on - strand, within PFLU_RS25870at 5777.255 kb on - strand, within PFLU_RS25870at 5777.264 kb on + strand, within PFLU_RS25870at 5777.264 kb on + strand, within PFLU_RS25870at 5777.264 kb on + strand, within PFLU_RS25870at 5777.264 kb on + strand, within PFLU_RS25870at 5777.265 kb on - strand, within PFLU_RS25870at 5777.265 kb on - strand, within PFLU_RS25870at 5777.265 kb on - strand, within PFLU_RS25870at 5777.265 kb on - strand, within PFLU_RS25870at 5777.265 kb on - strand, within PFLU_RS25870at 5777.265 kb on - strand, within PFLU_RS25870at 5777.272 kb on + strand, within PFLU_RS25870at 5777.272 kb on + strand, within PFLU_RS25870at 5777.272 kb on + strand, within PFLU_RS25870at 5777.272 kb on + strand, within PFLU_RS25870at 5777.272 kb on + strand, within PFLU_RS25870at 5777.272 kb on + strand, within PFLU_RS25870at 5777.273 kb on - strand, within PFLU_RS25870at 5777.273 kb on - strand, within PFLU_RS25870at 5777.273 kb on - strand, within PFLU_RS25870at 5777.273 kb on - strand, within PFLU_RS25870at 5777.273 kb on - strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.318 kb on + strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.319 kb on - strand, within PFLU_RS25870at 5777.333 kb on + strand, within PFLU_RS25870at 5777.333 kb on + strand, within PFLU_RS25870at 5777.333 kb on + strand, within PFLU_RS25870at 5777.333 kb on + strand, within PFLU_RS25870at 5777.333 kb on + strand, within PFLU_RS25870at 5777.333 kb on + strand, within PFLU_RS25870at 5777.333 kb on + strand, within PFLU_RS25870at 5777.333 kb on + strand, within PFLU_RS25870at 5777.333 kb on + strand, within PFLU_RS25870at 5777.334 kb on - strand, within PFLU_RS25870at 5777.334 kb on - strand, within PFLU_RS25870at 5777.334 kb on - strand, within PFLU_RS25870at 5777.334 kb on - strand, within PFLU_RS25870at 5777.334 kb on - strand, within PFLU_RS25870at 5777.334 kb on - strand, within PFLU_RS25870at 5777.334 kb on - strand, within PFLU_RS25870at 5777.365 kb on - strand, within PFLU_RS25870at 5777.461 kb on + strand, within PFLU_RS25870at 5777.462 kb on - strand, within PFLU_RS25870at 5777.529 kb on + strand, within PFLU_RS25870at 5777.529 kb on + strand, within PFLU_RS25870at 5777.530 kb on - strand, within PFLU_RS25870at 5777.530 kb on - strand, within PFLU_RS25870at 5777.530 kb on - strand, within PFLU_RS25870at 5777.530 kb on - strand, within PFLU_RS25870at 5777.530 kb on - strand, within PFLU_RS25870at 5777.775 kb on + strand, within PFLU_RS25875at 5777.775 kb on + strand, within PFLU_RS25875at 5777.776 kb on - strand, within PFLU_RS25875at 5777.851 kb on + strand, within PFLU_RS25875at 5777.884 kb on + strand, within PFLU_RS25875at 5777.884 kb on + strand, within PFLU_RS25875at 5777.885 kb on - strand, within PFLU_RS25875at 5777.894 kb on + strand, within PFLU_RS25875at 5777.947 kb on - strand, within PFLU_RS25875at 5777.947 kb on - strand, within PFLU_RS25875at 5778.014 kb on + strand, within PFLU_RS25875at 5778.014 kb on + strand, within PFLU_RS25875at 5778.014 kb on + strand, within PFLU_RS25875at 5778.015 kb on - strand, within PFLU_RS25875at 5778.015 kb on - strand, within PFLU_RS25875at 5778.015 kb on - strand, within PFLU_RS25875at 5778.015 kb on - strand, within PFLU_RS25875at 5778.015 kb on - strand, within PFLU_RS25875at 5778.015 kb on - strand, within PFLU_RS25875at 5778.015 kb on - strand, within PFLU_RS25875at 5778.015 kb on - strand, within PFLU_RS25875at 5778.078 kb on + strandat 5778.078 kb on + strandat 5778.078 kb on + strandat 5778.078 kb on + strandat 5778.079 kb on - strandat 5778.106 kb on + strandat 5778.106 kb on + strandat 5778.106 kb on + strandat 5778.107 kb on - strandat 5778.107 kb on - strandat 5778.107 kb on - strandat 5778.107 kb on - strandat 5778.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C) and L-Glutamine (N); with MOPS; with PEG
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5,776,761 - +0.5
5,776,850 - +2.3
5,776,850 - -0.5
5,776,881 - PFLU_RS25865 0.10 -1.9
5,776,881 - PFLU_RS25865 0.10 -1.2
5,776,881 - PFLU_RS25865 0.10 -2.4
5,776,881 - PFLU_RS25865 0.10 -1.4
5,776,881 - PFLU_RS25865 0.10 -0.2
5,776,927 + PFLU_RS25865 0.25 -0.2
5,776,928 - PFLU_RS25865 0.25 -0.7
5,776,928 - PFLU_RS25865 0.25 -0.3
5,776,928 - PFLU_RS25865 0.25 +1.1
5,776,928 - PFLU_RS25865 0.25 -1.0
5,777,103 - PFLU_RS25865 0.82 +0.7
5,777,142 - +0.0
5,777,143 - -0.3
5,777,143 - -1.3
5,777,143 - +0.7
5,777,143 - +0.3
5,777,143 - +1.0
5,777,143 - +0.5
5,777,143 - -0.2
5,777,143 - -0.6
5,777,143 - -1.6
5,777,143 - -1.5
5,777,157 - -0.2
5,777,157 - -0.3
5,777,157 - +0.0
5,777,157 - -0.4
5,777,171 - -0.4
5,777,171 - +0.1
5,777,171 - -1.0
5,777,227 + PFLU_RS25870 0.12 -0.1
5,777,227 + PFLU_RS25870 0.12 +1.3
5,777,227 + PFLU_RS25870 0.12 +0.9
5,777,227 + PFLU_RS25870 0.12 -1.1
5,777,227 + PFLU_RS25870 0.12 +0.5
5,777,227 + PFLU_RS25870 0.12 -0.1
5,777,227 + PFLU_RS25870 0.12 -0.7
5,777,227 + PFLU_RS25870 0.12 +0.3
5,777,227 + PFLU_RS25870 0.12 +0.0
5,777,228 - PFLU_RS25870 0.12 -0.9
5,777,228 - PFLU_RS25870 0.12 -0.9
5,777,228 - PFLU_RS25870 0.12 +0.1
5,777,228 - PFLU_RS25870 0.12 -0.8
5,777,228 - PFLU_RS25870 0.12 +0.9
5,777,228 - PFLU_RS25870 0.12 -0.3
5,777,228 - PFLU_RS25870 0.12 +0.4
5,777,228 - PFLU_RS25870 0.12 +0.0
5,777,228 - PFLU_RS25870 0.12 -0.5
5,777,228 - PFLU_RS25870 0.12 +2.1
5,777,228 - PFLU_RS25870 0.12 -1.5
5,777,228 - PFLU_RS25870 0.12 -0.8
5,777,230 - PFLU_RS25870 0.13 -1.0
5,777,254 + PFLU_RS25870 0.19 +0.3
5,777,255 - PFLU_RS25870 0.19 -1.7
5,777,255 - PFLU_RS25870 0.19 +1.2
5,777,264 + PFLU_RS25870 0.21 -0.5
5,777,264 + PFLU_RS25870 0.21 +0.3
5,777,264 + PFLU_RS25870 0.21 +0.4
5,777,264 + PFLU_RS25870 0.21 +0.3
5,777,265 - PFLU_RS25870 0.21 -1.3
5,777,265 - PFLU_RS25870 0.21 -0.2
5,777,265 - PFLU_RS25870 0.21 -0.1
5,777,265 - PFLU_RS25870 0.21 -0.4
5,777,265 - PFLU_RS25870 0.21 +0.1
5,777,265 - PFLU_RS25870 0.21 +0.6
5,777,272 + PFLU_RS25870 0.23 +1.7
5,777,272 + PFLU_RS25870 0.23 -1.1
5,777,272 + PFLU_RS25870 0.23 +2.1
5,777,272 + PFLU_RS25870 0.23 +1.7
5,777,272 + PFLU_RS25870 0.23 -0.5
5,777,272 + PFLU_RS25870 0.23 +0.6
5,777,273 - PFLU_RS25870 0.23 +0.2
5,777,273 - PFLU_RS25870 0.23 -1.5
5,777,273 - PFLU_RS25870 0.23 -0.9
5,777,273 - PFLU_RS25870 0.23 -0.3
5,777,273 - PFLU_RS25870 0.23 -0.8
5,777,318 + PFLU_RS25870 0.34 -1.3
5,777,318 + PFLU_RS25870 0.34 -0.7
5,777,318 + PFLU_RS25870 0.34 +0.4
5,777,318 + PFLU_RS25870 0.34 -0.6
5,777,318 + PFLU_RS25870 0.34 +0.7
5,777,318 + PFLU_RS25870 0.34 +1.5
5,777,318 + PFLU_RS25870 0.34 +1.1
5,777,318 + PFLU_RS25870 0.34 -0.5
5,777,318 + PFLU_RS25870 0.34 +0.6
5,777,318 + PFLU_RS25870 0.34 +1.4
5,777,318 + PFLU_RS25870 0.34 -0.5
5,777,319 - PFLU_RS25870 0.35 -0.2
5,777,319 - PFLU_RS25870 0.35 -0.1
5,777,319 - PFLU_RS25870 0.35 +0.6
5,777,319 - PFLU_RS25870 0.35 +0.9
5,777,319 - PFLU_RS25870 0.35 +0.3
5,777,319 - PFLU_RS25870 0.35 -0.8
5,777,319 - PFLU_RS25870 0.35 +0.2
5,777,319 - PFLU_RS25870 0.35 -0.5
5,777,319 - PFLU_RS25870 0.35 +0.1
5,777,319 - PFLU_RS25870 0.35 +0.3
5,777,319 - PFLU_RS25870 0.35 +0.7
5,777,319 - PFLU_RS25870 0.35 +0.3
5,777,319 - PFLU_RS25870 0.35 -0.1
5,777,333 + PFLU_RS25870 0.38 -1.3
5,777,333 + PFLU_RS25870 0.38 +0.9
5,777,333 + PFLU_RS25870 0.38 -0.5
5,777,333 + PFLU_RS25870 0.38 +0.4
5,777,333 + PFLU_RS25870 0.38 +0.6
5,777,333 + PFLU_RS25870 0.38 +0.1
5,777,333 + PFLU_RS25870 0.38 +1.3
5,777,333 + PFLU_RS25870 0.38 -0.5
5,777,333 + PFLU_RS25870 0.38 -0.1
5,777,334 - PFLU_RS25870 0.38 -2.2
5,777,334 - PFLU_RS25870 0.38 -0.2
5,777,334 - PFLU_RS25870 0.38 -0.7
5,777,334 - PFLU_RS25870 0.38 +0.7
5,777,334 - PFLU_RS25870 0.38 +0.5
5,777,334 - PFLU_RS25870 0.38 -0.7
5,777,334 - PFLU_RS25870 0.38 +0.9
5,777,365 - PFLU_RS25870 0.46 -2.7
5,777,461 + PFLU_RS25870 0.70 +0.0
5,777,462 - PFLU_RS25870 0.70 +0.1
5,777,529 + PFLU_RS25870 0.86 +0.0
5,777,529 + PFLU_RS25870 0.86 +0.1
5,777,530 - PFLU_RS25870 0.87 +0.9
5,777,530 - PFLU_RS25870 0.87 +0.1
5,777,530 - PFLU_RS25870 0.87 +0.3
5,777,530 - PFLU_RS25870 0.87 -1.1
5,777,530 - PFLU_RS25870 0.87 +0.2
5,777,775 + PFLU_RS25875 0.34 -1.9
5,777,775 + PFLU_RS25875 0.34 -0.0
5,777,776 - PFLU_RS25875 0.34 +0.5
5,777,851 + PFLU_RS25875 0.50 +0.5
5,777,884 + PFLU_RS25875 0.57 +0.1
5,777,884 + PFLU_RS25875 0.57 -0.0
5,777,885 - PFLU_RS25875 0.57 -2.0
5,777,894 + PFLU_RS25875 0.59 +0.9
5,777,947 - PFLU_RS25875 0.70 -1.7
5,777,947 - PFLU_RS25875 0.70 -1.9
5,778,014 + PFLU_RS25875 0.84 +0.0
5,778,014 + PFLU_RS25875 0.84 -1.6
5,778,014 + PFLU_RS25875 0.84 +0.3
5,778,015 - PFLU_RS25875 0.84 -0.1
5,778,015 - PFLU_RS25875 0.84 -1.6
5,778,015 - PFLU_RS25875 0.84 -0.7
5,778,015 - PFLU_RS25875 0.84 -1.5
5,778,015 - PFLU_RS25875 0.84 +0.7
5,778,015 - PFLU_RS25875 0.84 -0.1
5,778,015 - PFLU_RS25875 0.84 -1.0
5,778,015 - PFLU_RS25875 0.84 -0.0
5,778,078 + -2.3
5,778,078 + -1.3
5,778,078 + +1.0
5,778,078 + -1.0
5,778,079 - +0.0
5,778,106 + +1.3
5,778,106 + +1.7
5,778,106 + +0.9
5,778,107 - -1.3
5,778,107 - +0.9
5,778,107 - -1.3
5,778,107 - +1.1
5,778,107 - -1.3

Or see this region's nucleotide sequence