Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00840 and PGA1_c00850 are separated by 326 nucleotides PGA1_c00850 and PGA1_c00860 are separated by 156 nucleotides PGA1_c00860 and PGA1_c00870 are separated by 97 nucleotides PGA1_c00870 and PGA1_c00880 are separated by 75 nucleotides
PGA1_c00840: PGA1_c00840 - glutathione transferase-like protein, at 83,063 to 84,037
_c00840
PGA1_c00850: PGA1_c00850 - hypothetical protein, at 84,364 to 84,726
_c00850
PGA1_c00860: PGA1_c00860 - cystathionine beta-lyase PatB, at 84,883 to 86,055
_c00860
PGA1_c00870: PGA1_c00870 - peptide deformylase Def, at 86,153 to 86,671
_c00870
PGA1_c00880: PGA1_c00880 - peptide deformylase Def, at 86,747 to 87,256
_c00880
Position (kb) 84
85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 83.908 kb on - strand, within PGA1_c00840 at 83.913 kb on + strand, within PGA1_c00840 at 84.044 kb on + strand at 84.046 kb on + strand at 84.052 kb on - strand at 84.052 kb on - strand at 84.054 kb on - strand at 84.054 kb on - strand at 84.064 kb on - strand at 84.076 kb on - strand at 84.084 kb on - strand at 84.084 kb on - strand at 84.088 kb on - strand at 84.105 kb on - strand at 84.139 kb on + strand at 84.146 kb on + strand at 84.146 kb on + strand at 84.146 kb on + strand at 84.154 kb on - strand at 84.161 kb on + strand at 84.185 kb on + strand at 84.190 kb on + strand at 84.194 kb on + strand at 84.202 kb on + strand at 84.202 kb on + strand at 84.220 kb on - strand at 84.263 kb on + strand at 84.274 kb on + strand at 84.279 kb on - strand at 84.279 kb on - strand at 84.282 kb on - strand at 84.282 kb on - strand at 84.282 kb on - strand at 84.325 kb on + strand at 84.366 kb on + strand at 84.401 kb on - strand, within PGA1_c00850 at 84.412 kb on + strand, within PGA1_c00850 at 84.414 kb on + strand, within PGA1_c00850 at 84.414 kb on + strand, within PGA1_c00850 at 84.415 kb on - strand, within PGA1_c00850 at 84.415 kb on - strand, within PGA1_c00850 at 84.422 kb on - strand, within PGA1_c00850 at 84.422 kb on - strand, within PGA1_c00850 at 84.521 kb on + strand, within PGA1_c00850 at 84.540 kb on + strand, within PGA1_c00850 at 84.607 kb on + strand, within PGA1_c00850 at 84.607 kb on + strand, within PGA1_c00850 at 84.677 kb on + strand, within PGA1_c00850 at 84.687 kb on - strand, within PGA1_c00850 at 84.689 kb on + strand, within PGA1_c00850 at 84.689 kb on + strand, within PGA1_c00850 at 84.699 kb on + strand at 84.728 kb on - strand at 84.736 kb on + strand at 84.739 kb on - strand at 84.756 kb on - strand at 84.765 kb on - strand at 84.856 kb on - strand at 84.864 kb on + strand at 84.864 kb on + strand at 84.872 kb on - strand at 84.872 kb on - strand at 84.872 kb on - strand at 84.882 kb on + strand at 84.926 kb on + strand at 84.926 kb on + strand at 84.927 kb on + strand at 84.934 kb on - strand at 84.934 kb on - strand at 85.026 kb on + strand, within PGA1_c00860 at 85.026 kb on + strand, within PGA1_c00860 at 85.026 kb on + strand, within PGA1_c00860 at 85.026 kb on + strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.054 kb on + strand, within PGA1_c00860 at 85.054 kb on + strand, within PGA1_c00860 at 85.054 kb on + strand, within PGA1_c00860 at 85.062 kb on - strand, within PGA1_c00860 at 85.062 kb on - strand, within PGA1_c00860 at 85.062 kb on - strand, within PGA1_c00860 at 85.062 kb on - strand, within PGA1_c00860 at 85.062 kb on - strand, within PGA1_c00860 at 85.091 kb on - strand, within PGA1_c00860 at 85.098 kb on + strand, within PGA1_c00860 at 85.102 kb on - strand, within PGA1_c00860 at 85.104 kb on + strand, within PGA1_c00860 at 85.106 kb on + strand, within PGA1_c00860 at 85.112 kb on - strand, within PGA1_c00860 at 85.112 kb on - strand, within PGA1_c00860 at 85.122 kb on - strand, within PGA1_c00860 at 85.122 kb on - strand, within PGA1_c00860 at 85.125 kb on + strand, within PGA1_c00860 at 85.129 kb on - strand, within PGA1_c00860 at 85.145 kb on + strand, within PGA1_c00860 at 85.183 kb on - strand, within PGA1_c00860 at 85.203 kb on + strand, within PGA1_c00860 at 85.210 kb on - strand, within PGA1_c00860 at 85.315 kb on + strand, within PGA1_c00860 at 85.318 kb on - strand, within PGA1_c00860 at 85.390 kb on + strand, within PGA1_c00860 at 85.395 kb on + strand, within PGA1_c00860 at 85.398 kb on - strand, within PGA1_c00860 at 85.398 kb on - strand, within PGA1_c00860 at 85.413 kb on + strand, within PGA1_c00860 at 85.413 kb on + strand, within PGA1_c00860 at 85.413 kb on + strand, within PGA1_c00860 at 85.436 kb on + strand, within PGA1_c00860 at 85.476 kb on - strand, within PGA1_c00860 at 85.509 kb on + strand, within PGA1_c00860 at 85.509 kb on + strand, within PGA1_c00860 at 85.509 kb on + strand, within PGA1_c00860 at 85.520 kb on + strand, within PGA1_c00860 at 85.520 kb on + strand, within PGA1_c00860 at 85.520 kb on + strand, within PGA1_c00860 at 85.520 kb on + strand, within PGA1_c00860 at 85.528 kb on - strand, within PGA1_c00860 at 85.557 kb on + strand, within PGA1_c00860 at 85.651 kb on - strand, within PGA1_c00860 at 85.653 kb on + strand, within PGA1_c00860 at 85.661 kb on - strand, within PGA1_c00860 at 85.661 kb on - strand, within PGA1_c00860 at 85.661 kb on - strand, within PGA1_c00860 at 85.680 kb on + strand, within PGA1_c00860 at 85.700 kb on + strand, within PGA1_c00860 at 85.700 kb on + strand, within PGA1_c00860 at 85.700 kb on + strand, within PGA1_c00860 at 85.700 kb on + strand, within PGA1_c00860 at 85.708 kb on - strand, within PGA1_c00860 at 85.739 kb on - strand, within PGA1_c00860 at 85.760 kb on + strand, within PGA1_c00860 at 85.760 kb on + strand, within PGA1_c00860 at 85.760 kb on + strand, within PGA1_c00860 at 85.760 kb on + strand, within PGA1_c00860 at 85.760 kb on + strand, within PGA1_c00860 at 85.760 kb on + strand, within PGA1_c00860 at 85.760 kb on + strand, within PGA1_c00860 at 85.768 kb on - strand, within PGA1_c00860 at 85.768 kb on - strand, within PGA1_c00860 at 85.770 kb on + strand, within PGA1_c00860 at 85.770 kb on + strand, within PGA1_c00860 at 85.770 kb on + strand, within PGA1_c00860 at 85.773 kb on - strand, within PGA1_c00860 at 85.778 kb on - strand, within PGA1_c00860 at 85.778 kb on - strand, within PGA1_c00860 at 85.778 kb on - strand, within PGA1_c00860 at 85.778 kb on - strand, within PGA1_c00860 at 85.778 kb on - strand, within PGA1_c00860 at 85.778 kb on - strand, within PGA1_c00860 at 85.778 kb on - strand, within PGA1_c00860 at 85.783 kb on - strand, within PGA1_c00860 at 85.829 kb on + strand, within PGA1_c00860 at 85.846 kb on + strand, within PGA1_c00860 at 85.864 kb on + strand, within PGA1_c00860 at 85.873 kb on + strand, within PGA1_c00860 at 85.890 kb on - strand, within PGA1_c00860 at 85.913 kb on + strand, within PGA1_c00860 at 85.925 kb on - strand, within PGA1_c00860 at 85.925 kb on - strand, within PGA1_c00860 at 85.925 kb on - strand, within PGA1_c00860 at 86.000 kb on - strand at 86.033 kb on + strand at 86.063 kb on - strand at 86.071 kb on + strand at 86.123 kb on - strand at 86.628 kb on + strand at 86.696 kb on - strand at 86.705 kb on + strand at 86.711 kb on + strand at 86.711 kb on + strand at 86.711 kb on + strand at 86.711 kb on + strand at 86.713 kb on - strand at 86.720 kb on - strand at 86.791 kb on - strand at 86.889 kb on + strand, within PGA1_c00880 at 86.934 kb on + strand, within PGA1_c00880 at 86.942 kb on - strand, within PGA1_c00880 at 86.957 kb on + strand, within PGA1_c00880 at 86.957 kb on + strand, within PGA1_c00880 at 86.962 kb on + strand, within PGA1_c00880 at 86.965 kb on - strand, within PGA1_c00880 at 86.982 kb on + strand, within PGA1_c00880 at 87.045 kb on + strand, within PGA1_c00880 at 87.045 kb on + strand, within PGA1_c00880 at 87.053 kb on - strand, within PGA1_c00880 at 87.053 kb on - strand, within PGA1_c00880
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 83,908 - PGA1_c00840 0.87 +1.5 83,913 + PGA1_c00840 0.87 +0.2 84,044 + +0.4 84,046 + +0.6 84,052 - -0.0 84,052 - -0.0 84,054 - +0.8 84,054 - -0.1 84,064 - -0.7 84,076 - +0.1 84,084 - +0.3 84,084 - +2.3 84,088 - -0.0 84,105 - -1.5 84,139 + -1.6 84,146 + -0.7 84,146 + +2.4 84,146 + +0.9 84,154 - +1.7 84,161 + -0.4 84,185 + +0.9 84,190 + +1.3 84,194 + -0.4 84,202 + -0.3 84,202 + +0.8 84,220 - -0.2 84,263 + -1.1 84,274 + -0.1 84,279 - -1.0 84,279 - -0.5 84,282 - +0.4 84,282 - +0.2 84,282 - +0.5 84,325 + +0.1 84,366 + +1.2 84,401 - PGA1_c00850 0.10 +0.5 84,412 + PGA1_c00850 0.13 -2.0 84,414 + PGA1_c00850 0.14 -1.9 84,414 + PGA1_c00850 0.14 -1.0 84,415 - PGA1_c00850 0.14 +1.7 84,415 - PGA1_c00850 0.14 -0.2 84,422 - PGA1_c00850 0.16 +0.9 84,422 - PGA1_c00850 0.16 +0.3 84,521 + PGA1_c00850 0.43 -1.3 84,540 + PGA1_c00850 0.48 +0.5 84,607 + PGA1_c00850 0.67 +0.1 84,607 + PGA1_c00850 0.67 -1.5 84,677 + PGA1_c00850 0.86 -0.4 84,687 - PGA1_c00850 0.89 +0.8 84,689 + PGA1_c00850 0.90 +1.0 84,689 + PGA1_c00850 0.90 +0.1 84,699 + +0.0 84,728 - -0.5 84,736 + -0.7 84,739 - -0.2 84,756 - -0.2 84,765 - +0.3 84,856 - -0.4 84,864 + -0.6 84,864 + +0.3 84,872 - +0.6 84,872 - +1.0 84,872 - +1.1 84,882 + +0.7 84,926 + -2.1 84,926 + -0.4 84,927 + -0.3 84,934 - -3.2 84,934 - -2.4 85,026 + PGA1_c00860 0.12 -1.5 85,026 + PGA1_c00860 0.12 -0.2 85,026 + PGA1_c00860 0.12 -0.9 85,026 + PGA1_c00860 0.12 -0.8 85,034 - PGA1_c00860 0.13 -2.0 85,034 - PGA1_c00860 0.13 +0.1 85,034 - PGA1_c00860 0.13 -2.0 85,034 - PGA1_c00860 0.13 +0.1 85,034 - PGA1_c00860 0.13 -1.1 85,034 - PGA1_c00860 0.13 -0.9 85,034 - PGA1_c00860 0.13 -2.8 85,034 - PGA1_c00860 0.13 -1.5 85,034 - PGA1_c00860 0.13 -0.9 85,034 - PGA1_c00860 0.13 -0.8 85,054 + PGA1_c00860 0.15 -1.9 85,054 + PGA1_c00860 0.15 +0.4 85,054 + PGA1_c00860 0.15 -1.4 85,062 - PGA1_c00860 0.15 +0.0 85,062 - PGA1_c00860 0.15 -0.9 85,062 - PGA1_c00860 0.15 -0.5 85,062 - PGA1_c00860 0.15 -0.3 85,062 - PGA1_c00860 0.15 -1.3 85,091 - PGA1_c00860 0.18 -1.3 85,098 + PGA1_c00860 0.18 -1.2 85,102 - PGA1_c00860 0.19 +1.1 85,104 + PGA1_c00860 0.19 +0.8 85,106 + PGA1_c00860 0.19 -1.4 85,112 - PGA1_c00860 0.20 -0.0 85,112 - PGA1_c00860 0.20 -1.8 85,122 - PGA1_c00860 0.20 +1.5 85,122 - PGA1_c00860 0.20 -0.8 85,125 + PGA1_c00860 0.21 -0.7 85,129 - PGA1_c00860 0.21 -0.1 85,145 + PGA1_c00860 0.22 -1.5 85,183 - PGA1_c00860 0.26 +0.1 85,203 + PGA1_c00860 0.27 +0.2 85,210 - PGA1_c00860 0.28 +0.6 85,315 + PGA1_c00860 0.37 -1.7 85,318 - PGA1_c00860 0.37 -0.7 85,390 + PGA1_c00860 0.43 -1.4 85,395 + PGA1_c00860 0.44 -1.0 85,398 - PGA1_c00860 0.44 -1.1 85,398 - PGA1_c00860 0.44 -1.4 85,413 + PGA1_c00860 0.45 +0.1 85,413 + PGA1_c00860 0.45 +0.8 85,413 + PGA1_c00860 0.45 +0.5 85,436 + PGA1_c00860 0.47 -0.6 85,476 - PGA1_c00860 0.51 +0.3 85,509 + PGA1_c00860 0.53 +0.9 85,509 + PGA1_c00860 0.53 -0.9 85,509 + PGA1_c00860 0.53 -0.7 85,520 + PGA1_c00860 0.54 -0.4 85,520 + PGA1_c00860 0.54 -0.2 85,520 + PGA1_c00860 0.54 -0.2 85,520 + PGA1_c00860 0.54 -1.2 85,528 - PGA1_c00860 0.55 -0.1 85,557 + PGA1_c00860 0.57 +1.4 85,651 - PGA1_c00860 0.65 +0.4 85,653 + PGA1_c00860 0.66 -2.0 85,661 - PGA1_c00860 0.66 +0.1 85,661 - PGA1_c00860 0.66 -0.7 85,661 - PGA1_c00860 0.66 -1.3 85,680 + PGA1_c00860 0.68 -0.0 85,700 + PGA1_c00860 0.70 +0.1 85,700 + PGA1_c00860 0.70 +0.2 85,700 + PGA1_c00860 0.70 -1.3 85,700 + PGA1_c00860 0.70 -0.8 85,708 - PGA1_c00860 0.70 -0.2 85,739 - PGA1_c00860 0.73 -1.1 85,760 + PGA1_c00860 0.75 -0.6 85,760 + PGA1_c00860 0.75 +0.5 85,760 + PGA1_c00860 0.75 -0.0 85,760 + PGA1_c00860 0.75 -2.4 85,760 + PGA1_c00860 0.75 -0.7 85,760 + PGA1_c00860 0.75 -1.3 85,760 + PGA1_c00860 0.75 +0.2 85,768 - PGA1_c00860 0.75 +0.1 85,768 - PGA1_c00860 0.75 -1.4 85,770 + PGA1_c00860 0.76 -0.1 85,770 + PGA1_c00860 0.76 -1.2 85,770 + PGA1_c00860 0.76 -2.5 85,773 - PGA1_c00860 0.76 -1.4 85,778 - PGA1_c00860 0.76 +0.9 85,778 - PGA1_c00860 0.76 -0.7 85,778 - PGA1_c00860 0.76 -2.6 85,778 - PGA1_c00860 0.76 -1.0 85,778 - PGA1_c00860 0.76 -1.1 85,778 - PGA1_c00860 0.76 +0.1 85,778 - PGA1_c00860 0.76 -0.1 85,783 - PGA1_c00860 0.77 -1.5 85,829 + PGA1_c00860 0.81 -1.1 85,846 + PGA1_c00860 0.82 -3.0 85,864 + PGA1_c00860 0.84 -0.2 85,873 + PGA1_c00860 0.84 -1.3 85,890 - PGA1_c00860 0.86 -2.9 85,913 + PGA1_c00860 0.88 -0.8 85,925 - PGA1_c00860 0.89 -2.2 85,925 - PGA1_c00860 0.89 +1.4 85,925 - PGA1_c00860 0.89 -0.7 86,000 - +0.2 86,033 + -0.4 86,063 - -3.1 86,071 + +0.6 86,123 - +0.0 86,628 + +0.1 86,696 - -2.4 86,705 + +0.0 86,711 + +0.1 86,711 + -0.4 86,711 + +1.1 86,711 + -0.8 86,713 - -1.5 86,720 - +0.0 86,791 - +0.5 86,889 + PGA1_c00880 0.28 -1.0 86,934 + PGA1_c00880 0.37 -0.4 86,942 - PGA1_c00880 0.38 -2.0 86,957 + PGA1_c00880 0.41 +0.4 86,957 + PGA1_c00880 0.41 -0.7 86,962 + PGA1_c00880 0.42 +0.5 86,965 - PGA1_c00880 0.43 +0.8 86,982 + PGA1_c00880 0.46 +1.2 87,045 + PGA1_c00880 0.58 -0.1 87,045 + PGA1_c00880 0.58 -0.1 87,053 - PGA1_c00880 0.60 -1.2 87,053 - PGA1_c00880 0.60 +1.8
Or see this region's nucleotide sequence