Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08080

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08070 and PGA1_c08080 overlap by 4 nucleotidesPGA1_c08080 and PGA1_c08090 are separated by 4 nucleotidesPGA1_c08090 and PGA1_c08100 overlap by 4 nucleotides PGA1_c08070: PGA1_c08070 - uroporphyrin-III C-methyltransferase CobA, at 836,316 to 837,080 _c08070 PGA1_c08080: PGA1_c08080 - putative cobyrinic acid A,C-diamide synthase CobB, at 837,077 to 838,408 _c08080 PGA1_c08090: PGA1_c08090 - precorrin-4 C(11)-methyltransferase CobM, at 838,413 to 839,207 _c08090 PGA1_c08100: PGA1_c08100 - Cobalamin synthesis G C-terminus., at 839,204 to 839,581 _c08100 Position (kb) 837 838 839Strain fitness (log2 ratio) -2 -1 0 1at 836.077 kb on + strandat 836.109 kb on + strandat 836.131 kb on - strandat 836.177 kb on + strandat 836.276 kb on + strandat 836.276 kb on + strandat 836.276 kb on + strandat 837.090 kb on + strandat 838.439 kb on + strandat 838.490 kb on + strandat 839.217 kb on - strandat 839.217 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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836,077 + +0.8
836,109 + -1.5
836,131 - +0.2
836,177 + -1.2
836,276 + -1.3
836,276 + -0.6
836,276 + +0.6
837,090 + +0.3
838,439 + -1.8
838,490 + +0.2
839,217 - -0.5
839,217 - -2.5

Or see this region's nucleotide sequence