Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07970 and PGA1_c07980 are separated by 46 nucleotides PGA1_c07980 and PGA1_c07990 overlap by 1 nucleotides PGA1_c07990 and PGA1_c08000 are separated by 44 nucleotides
PGA1_c07970: PGA1_c07970 - putative membrane transport protein, at 827,255 to 828,187
_c07970
PGA1_c07980: PGA1_c07980 - metallo beta-lactamase domain-containing protein, at 828,234 to 829,031
_c07980
PGA1_c07990: PGA1_c07990 - putative hydrolase, TatD family, at 829,031 to 829,852
_c07990
PGA1_c08000: PGA1_c08000 - DNA polymerase III, gamma/tau subunits, at 829,897 to 831,018
_c08000
Position (kb) 829
830 Strain fitness (log2 ratio) -2
-1
0
1 at 828.119 kb on + strand at 828.281 kb on + strand at 828.281 kb on + strand at 828.296 kb on - strand at 828.348 kb on + strand, within PGA1_c07980 at 828.356 kb on - strand, within PGA1_c07980 at 828.356 kb on - strand, within PGA1_c07980 at 828.417 kb on + strand, within PGA1_c07980 at 828.529 kb on - strand, within PGA1_c07980 at 828.530 kb on + strand, within PGA1_c07980 at 828.620 kb on + strand, within PGA1_c07980 at 828.620 kb on + strand, within PGA1_c07980 at 828.628 kb on - strand, within PGA1_c07980 at 828.635 kb on + strand, within PGA1_c07980 at 828.635 kb on + strand, within PGA1_c07980 at 828.654 kb on - strand, within PGA1_c07980 at 828.763 kb on + strand, within PGA1_c07980 at 828.793 kb on + strand, within PGA1_c07980 at 828.800 kb on - strand, within PGA1_c07980 at 828.884 kb on + strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.938 kb on - strand, within PGA1_c07980 at 828.991 kb on - strand at 828.994 kb on - strand at 829.035 kb on - strand at 829.134 kb on - strand, within PGA1_c07990 at 829.150 kb on - strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.163 kb on - strand, within PGA1_c07990 at 829.201 kb on + strand, within PGA1_c07990 at 829.264 kb on + strand, within PGA1_c07990 at 829.272 kb on - strand, within PGA1_c07990 at 829.315 kb on - strand, within PGA1_c07990 at 829.326 kb on - strand, within PGA1_c07990 at 829.499 kb on + strand, within PGA1_c07990 at 829.507 kb on + strand, within PGA1_c07990 at 829.507 kb on + strand, within PGA1_c07990 at 829.515 kb on - strand, within PGA1_c07990 at 829.515 kb on - strand, within PGA1_c07990 at 829.525 kb on - strand, within PGA1_c07990 at 829.544 kb on + strand, within PGA1_c07990 at 829.636 kb on - strand, within PGA1_c07990 at 829.681 kb on + strand, within PGA1_c07990 at 829.723 kb on - strand, within PGA1_c07990 at 829.747 kb on - strand, within PGA1_c07990 at 829.801 kb on + strand at 829.857 kb on + strand at 829.872 kb on - strand at 829.898 kb on - strand at 829.912 kb on + strand at 829.912 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 828,119 + -1.8 828,281 + +0.7 828,281 + +0.8 828,296 - +0.4 828,348 + PGA1_c07980 0.14 +0.6 828,356 - PGA1_c07980 0.15 -1.2 828,356 - PGA1_c07980 0.15 -0.6 828,417 + PGA1_c07980 0.23 -1.3 828,529 - PGA1_c07980 0.37 -0.2 828,530 + PGA1_c07980 0.37 -1.3 828,620 + PGA1_c07980 0.48 -0.8 828,620 + PGA1_c07980 0.48 +1.2 828,628 - PGA1_c07980 0.49 -0.0 828,635 + PGA1_c07980 0.50 -1.1 828,635 + PGA1_c07980 0.50 -0.4 828,654 - PGA1_c07980 0.53 -0.5 828,763 + PGA1_c07980 0.66 -0.0 828,793 + PGA1_c07980 0.70 -0.2 828,800 - PGA1_c07980 0.71 +0.6 828,884 + PGA1_c07980 0.81 +0.2 828,892 - PGA1_c07980 0.82 -0.8 828,892 - PGA1_c07980 0.82 +0.7 828,892 - PGA1_c07980 0.82 +0.8 828,892 - PGA1_c07980 0.82 -1.2 828,938 - PGA1_c07980 0.88 -0.6 828,991 - -0.6 828,994 - +0.4 829,035 - +0.5 829,134 - PGA1_c07990 0.13 -0.4 829,150 - PGA1_c07990 0.14 +0.0 829,155 + PGA1_c07990 0.15 -0.5 829,155 + PGA1_c07990 0.15 +1.1 829,163 - PGA1_c07990 0.16 -1.0 829,201 + PGA1_c07990 0.21 -1.0 829,264 + PGA1_c07990 0.28 +0.4 829,272 - PGA1_c07990 0.29 -1.2 829,315 - PGA1_c07990 0.35 -1.9 829,326 - PGA1_c07990 0.36 -1.2 829,499 + PGA1_c07990 0.57 -1.2 829,507 + PGA1_c07990 0.58 -1.5 829,507 + PGA1_c07990 0.58 -1.6 829,515 - PGA1_c07990 0.59 -1.3 829,515 - PGA1_c07990 0.59 -1.1 829,525 - PGA1_c07990 0.60 -1.6 829,544 + PGA1_c07990 0.62 +0.5 829,636 - PGA1_c07990 0.74 +0.7 829,681 + PGA1_c07990 0.79 -0.5 829,723 - PGA1_c07990 0.84 +0.8 829,747 - PGA1_c07990 0.87 -1.3 829,801 + -0.7 829,857 + +1.6 829,872 - -1.6 829,898 - -1.0 829,912 + +0.2 829,912 + -1.7
Or see this region's nucleotide sequence