Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07940 and PGA1_c07950 are separated by 149 nucleotides PGA1_c07950 and PGA1_c07960 are separated by 1 nucleotides
PGA1_c07940: PGA1_c07940 - Uncharacterized protein conserved in bacteria, at 824,056 to 825,033
_c07940
PGA1_c07950: PGA1_c07950 - hypothetical protein, at 825,183 to 825,677
_c07950
PGA1_c07960: PGA1_c07960 - putative integral membrane protein, at 825,679 to 827,196
_c07960
Position (kb) 825
826 Strain fitness (log2 ratio) -2
-1
0
1
2 at 824.190 kb on + strand, within PGA1_c07940 at 824.231 kb on - strand, within PGA1_c07940 at 824.281 kb on + strand, within PGA1_c07940 at 824.310 kb on + strand, within PGA1_c07940 at 824.350 kb on - strand, within PGA1_c07940 at 824.587 kb on + strand, within PGA1_c07940 at 824.613 kb on - strand, within PGA1_c07940 at 824.674 kb on + strand, within PGA1_c07940 at 824.751 kb on - strand, within PGA1_c07940 at 824.755 kb on + strand, within PGA1_c07940 at 824.760 kb on + strand, within PGA1_c07940 at 824.776 kb on + strand, within PGA1_c07940 at 824.937 kb on + strand at 824.952 kb on - strand at 825.034 kb on + strand at 825.050 kb on - strand at 825.334 kb on - strand, within PGA1_c07950 at 825.397 kb on - strand, within PGA1_c07950 at 825.443 kb on + strand, within PGA1_c07950 at 825.631 kb on + strand at 825.664 kb on + strand at 825.908 kb on + strand, within PGA1_c07960 at 825.916 kb on - strand, within PGA1_c07960 at 825.992 kb on - strand, within PGA1_c07960 at 825.992 kb on - strand, within PGA1_c07960 at 826.040 kb on + strand, within PGA1_c07960 at 826.057 kb on - strand, within PGA1_c07960 at 826.080 kb on + strand, within PGA1_c07960 at 826.098 kb on + strand, within PGA1_c07960 at 826.188 kb on + strand, within PGA1_c07960 at 826.218 kb on - strand, within PGA1_c07960 at 826.220 kb on + strand, within PGA1_c07960 at 826.224 kb on + strand, within PGA1_c07960 at 826.224 kb on + strand, within PGA1_c07960 at 826.224 kb on + strand, within PGA1_c07960 at 826.224 kb on + strand, within PGA1_c07960 at 826.232 kb on - strand, within PGA1_c07960 at 826.232 kb on - strand, within PGA1_c07960 at 826.232 kb on - strand, within PGA1_c07960 at 826.232 kb on - strand, within PGA1_c07960 at 826.309 kb on - strand, within PGA1_c07960 at 826.309 kb on - strand, within PGA1_c07960 at 826.334 kb on - strand, within PGA1_c07960 at 826.407 kb on + strand, within PGA1_c07960 at 826.520 kb on + strand, within PGA1_c07960 at 826.525 kb on + strand, within PGA1_c07960 at 826.538 kb on - strand, within PGA1_c07960
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 824,190 + PGA1_c07940 0.14 +0.2 824,231 - PGA1_c07940 0.18 -0.8 824,281 + PGA1_c07940 0.23 +0.2 824,310 + PGA1_c07940 0.26 -0.7 824,350 - PGA1_c07940 0.30 +0.3 824,587 + PGA1_c07940 0.54 +0.4 824,613 - PGA1_c07940 0.57 -0.6 824,674 + PGA1_c07940 0.63 -0.5 824,751 - PGA1_c07940 0.71 -2.2 824,755 + PGA1_c07940 0.71 -0.0 824,760 + PGA1_c07940 0.72 +0.4 824,776 + PGA1_c07940 0.74 -1.4 824,937 + -0.9 824,952 - -0.4 825,034 + -1.8 825,050 - +1.2 825,334 - PGA1_c07950 0.31 -0.8 825,397 - PGA1_c07950 0.43 -1.8 825,443 + PGA1_c07950 0.53 -1.0 825,631 + +0.7 825,664 + -0.2 825,908 + PGA1_c07960 0.15 -1.8 825,916 - PGA1_c07960 0.16 -0.3 825,992 - PGA1_c07960 0.21 +0.3 825,992 - PGA1_c07960 0.21 +0.6 826,040 + PGA1_c07960 0.24 +1.5 826,057 - PGA1_c07960 0.25 +0.0 826,080 + PGA1_c07960 0.26 -0.8 826,098 + PGA1_c07960 0.28 +1.4 826,188 + PGA1_c07960 0.34 +1.2 826,218 - PGA1_c07960 0.36 -0.2 826,220 + PGA1_c07960 0.36 -0.0 826,224 + PGA1_c07960 0.36 +0.9 826,224 + PGA1_c07960 0.36 +1.1 826,224 + PGA1_c07960 0.36 +1.0 826,224 + PGA1_c07960 0.36 +0.3 826,232 - PGA1_c07960 0.36 +0.5 826,232 - PGA1_c07960 0.36 +0.0 826,232 - PGA1_c07960 0.36 +0.8 826,232 - PGA1_c07960 0.36 -0.1 826,309 - PGA1_c07960 0.42 +1.0 826,309 - PGA1_c07960 0.42 +0.7 826,334 - PGA1_c07960 0.43 -1.3 826,407 + PGA1_c07960 0.48 +0.7 826,520 + PGA1_c07960 0.55 +0.3 826,525 + PGA1_c07960 0.56 +1.8 826,538 - PGA1_c07960 0.57 +1.2
Or see this region's nucleotide sequence