Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07690 and PGA1_c07700 overlap by 1 nucleotides PGA1_c07700 and PGA1_c07710 overlap by 4 nucleotides PGA1_c07710 and PGA1_c07720 are separated by 37 nucleotides PGA1_c07720 and PGA1_c07730 are separated by 28 nucleotides
PGA1_c07690: PGA1_c07690 - (S)-mandelate dehydrogenase MdlB, at 797,465 to 798,556
_c07690
PGA1_c07700: PGA1_c07700 - putative sulfopyruvate decarboxylase subunit beta, at 798,556 to 799,110
_c07700
PGA1_c07710: PGA1_c07710 - putative sulfopyruvate decarboxylase subunit alpha, at 799,107 to 799,613
_c07710
PGA1_c07720: PGA1_c07720 - universal stress protein, at 799,651 to 800,061
_c07720
PGA1_c07730: PGA1_c07730 - putative zinc-binding alcohol dehydrogenase, at 800,090 to 801,070
_c07730
Position (kb) 799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 798.138 kb on - strand, within PGA1_c07690 at 798.148 kb on + strand, within PGA1_c07690 at 798.182 kb on + strand, within PGA1_c07690 at 798.184 kb on - strand, within PGA1_c07690 at 798.184 kb on - strand, within PGA1_c07690 at 798.190 kb on - strand, within PGA1_c07690 at 798.305 kb on + strand, within PGA1_c07690 at 798.364 kb on + strand, within PGA1_c07690 at 798.419 kb on + strand, within PGA1_c07690 at 798.419 kb on + strand, within PGA1_c07690 at 798.427 kb on - strand, within PGA1_c07690 at 798.434 kb on + strand, within PGA1_c07690 at 798.434 kb on + strand, within PGA1_c07690 at 798.440 kb on - strand, within PGA1_c07690 at 798.450 kb on - strand at 798.452 kb on - strand at 798.495 kb on - strand at 798.497 kb on - strand at 798.562 kb on + strand at 798.567 kb on - strand at 798.659 kb on - strand, within PGA1_c07700 at 798.703 kb on - strand, within PGA1_c07700 at 798.738 kb on - strand, within PGA1_c07700 at 798.782 kb on - strand, within PGA1_c07700 at 798.786 kb on - strand, within PGA1_c07700 at 798.842 kb on - strand, within PGA1_c07700 at 798.886 kb on + strand, within PGA1_c07700 at 798.891 kb on + strand, within PGA1_c07700 at 798.946 kb on + strand, within PGA1_c07700 at 798.958 kb on + strand, within PGA1_c07700 at 799.023 kb on + strand, within PGA1_c07700 at 799.023 kb on + strand, within PGA1_c07700 at 799.023 kb on + strand, within PGA1_c07700 at 799.023 kb on + strand, within PGA1_c07700 at 799.031 kb on - strand, within PGA1_c07700 at 799.064 kb on - strand at 799.066 kb on + strand at 799.151 kb on - strand at 799.159 kb on + strand, within PGA1_c07710 at 799.376 kb on + strand, within PGA1_c07710 at 799.455 kb on + strand, within PGA1_c07710 at 799.468 kb on + strand, within PGA1_c07710 at 799.643 kb on + strand at 799.658 kb on - strand at 799.666 kb on + strand at 799.674 kb on - strand at 799.701 kb on - strand, within PGA1_c07720 at 799.759 kb on + strand, within PGA1_c07720 at 799.765 kb on + strand, within PGA1_c07720 at 799.773 kb on - strand, within PGA1_c07720 at 799.774 kb on + strand, within PGA1_c07720 at 799.787 kb on - strand, within PGA1_c07720 at 799.787 kb on - strand, within PGA1_c07720 at 799.903 kb on + strand, within PGA1_c07720 at 799.938 kb on - strand, within PGA1_c07720 at 799.938 kb on - strand, within PGA1_c07720 at 800.009 kb on + strand, within PGA1_c07720 at 800.012 kb on - strand, within PGA1_c07720 at 800.017 kb on - strand, within PGA1_c07720 at 800.076 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.089 kb on - strand at 800.089 kb on - strand at 800.089 kb on - strand at 800.089 kb on - strand at 800.090 kb on - strand at 800.096 kb on - strand at 800.143 kb on - strand at 800.190 kb on - strand, within PGA1_c07730 at 800.193 kb on - strand, within PGA1_c07730 at 800.257 kb on + strand, within PGA1_c07730 at 800.258 kb on + strand, within PGA1_c07730 at 800.265 kb on - strand, within PGA1_c07730 at 800.313 kb on - strand, within PGA1_c07730 at 800.313 kb on - strand, within PGA1_c07730 at 800.339 kb on - strand, within PGA1_c07730 at 800.490 kb on + strand, within PGA1_c07730
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 798,138 - PGA1_c07690 0.62 -0.6 798,148 + PGA1_c07690 0.63 +0.6 798,182 + PGA1_c07690 0.66 -0.4 798,184 - PGA1_c07690 0.66 -1.6 798,184 - PGA1_c07690 0.66 +0.7 798,190 - PGA1_c07690 0.66 -0.3 798,305 + PGA1_c07690 0.77 -0.3 798,364 + PGA1_c07690 0.82 +0.6 798,419 + PGA1_c07690 0.87 -0.8 798,419 + PGA1_c07690 0.87 -0.1 798,427 - PGA1_c07690 0.88 +1.1 798,434 + PGA1_c07690 0.89 -0.1 798,434 + PGA1_c07690 0.89 -0.1 798,440 - PGA1_c07690 0.89 +0.6 798,450 - +0.5 798,452 - +0.1 798,495 - +0.1 798,497 - +0.6 798,562 + -2.6 798,567 - +0.0 798,659 - PGA1_c07700 0.19 +1.8 798,703 - PGA1_c07700 0.26 +0.3 798,738 - PGA1_c07700 0.33 -0.8 798,782 - PGA1_c07700 0.41 -0.2 798,786 - PGA1_c07700 0.41 +1.0 798,842 - PGA1_c07700 0.52 -1.7 798,886 + PGA1_c07700 0.59 -1.0 798,891 + PGA1_c07700 0.60 +0.4 798,946 + PGA1_c07700 0.70 +0.0 798,958 + PGA1_c07700 0.72 -0.3 799,023 + PGA1_c07700 0.84 +1.3 799,023 + PGA1_c07700 0.84 +0.4 799,023 + PGA1_c07700 0.84 +0.3 799,023 + PGA1_c07700 0.84 +0.0 799,031 - PGA1_c07700 0.86 -0.8 799,064 - +0.4 799,066 + +0.5 799,151 - +0.7 799,159 + PGA1_c07710 0.10 -2.3 799,376 + PGA1_c07710 0.53 -1.9 799,455 + PGA1_c07710 0.69 +0.1 799,468 + PGA1_c07710 0.71 +0.6 799,643 + +1.1 799,658 - +0.1 799,666 + -0.8 799,674 - +1.3 799,701 - PGA1_c07720 0.12 -0.8 799,759 + PGA1_c07720 0.26 +1.6 799,765 + PGA1_c07720 0.28 -0.2 799,773 - PGA1_c07720 0.30 -2.9 799,774 + PGA1_c07720 0.30 +0.2 799,787 - PGA1_c07720 0.33 -0.5 799,787 - PGA1_c07720 0.33 -0.3 799,903 + PGA1_c07720 0.61 +2.1 799,938 - PGA1_c07720 0.70 +1.1 799,938 - PGA1_c07720 0.70 +0.5 800,009 + PGA1_c07720 0.87 -0.7 800,012 - PGA1_c07720 0.88 +1.0 800,017 - PGA1_c07720 0.89 +0.7 800,076 + +1.1 800,081 + -1.3 800,081 + -0.7 800,081 + +1.7 800,081 + +0.4 800,081 + +0.1 800,081 + +1.2 800,081 + +0.4 800,081 + +1.5 800,081 + +0.2 800,089 - +0.6 800,089 - +1.1 800,089 - -0.2 800,089 - +1.3 800,090 - +0.9 800,096 - -0.9 800,143 - +0.2 800,190 - PGA1_c07730 0.10 -0.6 800,193 - PGA1_c07730 0.10 -0.9 800,257 + PGA1_c07730 0.17 -0.3 800,258 + PGA1_c07730 0.17 +1.6 800,265 - PGA1_c07730 0.18 +0.1 800,313 - PGA1_c07730 0.23 +1.4 800,313 - PGA1_c07730 0.23 +1.5 800,339 - PGA1_c07730 0.25 +0.1 800,490 + PGA1_c07730 0.41 +0.1
Or see this region's nucleotide sequence