Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07620 and PGA1_c07630 are separated by 169 nucleotides PGA1_c07630 and PGA1_c07640 are separated by 67 nucleotides PGA1_c07640 and PGA1_c07650 are separated by 175 nucleotides
PGA1_c07620: PGA1_c07620 - Type IV pilus biogenesis., at 787,888 to 790,587
_c07620
PGA1_c07630: PGA1_c07630 - Uncharacterized conserved protein, at 790,757 to 791,473
_c07630
PGA1_c07640: PGA1_c07640 - O-acetylhomoserine / O-acetylserine sulfhydrylase, at 791,541 to 792,833
_c07640
PGA1_c07650: PGA1_c07650 - hypothetical protein, at 793,009 to 793,998
_c07650
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 790.542 kb on + strand at 790.569 kb on + strand at 790.606 kb on + strand at 790.614 kb on - strand at 790.616 kb on + strand at 790.624 kb on - strand at 790.624 kb on - strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.803 kb on + strand at 790.808 kb on + strand at 790.808 kb on + strand at 790.910 kb on - strand, within PGA1_c07630 at 790.910 kb on - strand, within PGA1_c07630 at 790.939 kb on + strand, within PGA1_c07630 at 790.992 kb on + strand, within PGA1_c07630 at 791.038 kb on + strand, within PGA1_c07630 at 791.067 kb on + strand, within PGA1_c07630 at 791.111 kb on + strand, within PGA1_c07630 at 791.112 kb on + strand, within PGA1_c07630 at 791.242 kb on - strand, within PGA1_c07630 at 791.247 kb on - strand, within PGA1_c07630 at 791.301 kb on + strand, within PGA1_c07630 at 791.309 kb on - strand, within PGA1_c07630 at 791.359 kb on + strand, within PGA1_c07630 at 791.366 kb on + strand, within PGA1_c07630 at 791.372 kb on + strand, within PGA1_c07630 at 791.507 kb on + strand at 791.514 kb on + strand at 791.644 kb on + strand at 791.654 kb on + strand at 791.659 kb on + strand at 791.659 kb on + strand at 791.662 kb on - strand at 791.667 kb on - strand at 791.693 kb on + strand, within PGA1_c07640 at 791.722 kb on - strand, within PGA1_c07640 at 791.749 kb on + strand, within PGA1_c07640 at 791.759 kb on + strand, within PGA1_c07640 at 791.779 kb on - strand, within PGA1_c07640 at 791.816 kb on + strand, within PGA1_c07640 at 791.816 kb on + strand, within PGA1_c07640 at 791.841 kb on + strand, within PGA1_c07640 at 791.864 kb on + strand, within PGA1_c07640 at 791.867 kb on - strand, within PGA1_c07640 at 791.867 kb on - strand, within PGA1_c07640 at 791.867 kb on - strand, within PGA1_c07640 at 791.867 kb on - strand, within PGA1_c07640 at 791.872 kb on - strand, within PGA1_c07640 at 791.877 kb on - strand, within PGA1_c07640 at 791.962 kb on - strand, within PGA1_c07640 at 791.963 kb on - strand, within PGA1_c07640 at 791.992 kb on + strand, within PGA1_c07640 at 791.992 kb on + strand, within PGA1_c07640 at 792.000 kb on - strand, within PGA1_c07640 at 792.000 kb on - strand, within PGA1_c07640 at 792.026 kb on + strand, within PGA1_c07640 at 792.041 kb on + strand, within PGA1_c07640 at 792.049 kb on + strand, within PGA1_c07640 at 792.086 kb on + strand, within PGA1_c07640 at 792.094 kb on - strand, within PGA1_c07640 at 792.100 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.114 kb on - strand, within PGA1_c07640 at 792.227 kb on + strand, within PGA1_c07640 at 792.261 kb on + strand, within PGA1_c07640 at 792.265 kb on - strand, within PGA1_c07640 at 792.346 kb on + strand, within PGA1_c07640 at 792.346 kb on + strand, within PGA1_c07640 at 792.374 kb on + strand, within PGA1_c07640 at 792.412 kb on + strand, within PGA1_c07640 at 792.412 kb on + strand, within PGA1_c07640 at 792.413 kb on + strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.421 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.555 kb on + strand, within PGA1_c07640 at 792.563 kb on - strand, within PGA1_c07640 at 792.585 kb on - strand, within PGA1_c07640 at 792.631 kb on - strand, within PGA1_c07640 at 792.631 kb on - strand, within PGA1_c07640 at 792.648 kb on + strand, within PGA1_c07640 at 792.765 kb on + strand at 792.810 kb on + strand at 792.831 kb on + strand at 792.831 kb on + strand at 792.839 kb on + strand at 792.844 kb on + strand at 792.844 kb on + strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.887 kb on + strand at 792.893 kb on - strand at 792.893 kb on - strand at 792.907 kb on - strand at 792.943 kb on - strand at 792.950 kb on + strand at 792.977 kb on + strand at 792.983 kb on - strand at 793.066 kb on + strand at 793.106 kb on + strand at 793.167 kb on + strand, within PGA1_c07650 at 793.167 kb on + strand, within PGA1_c07650 at 793.175 kb on - strand, within PGA1_c07650 at 793.177 kb on + strand, within PGA1_c07650 at 793.192 kb on - strand, within PGA1_c07650 at 793.220 kb on + strand, within PGA1_c07650 at 793.220 kb on + strand, within PGA1_c07650 at 793.228 kb on - strand, within PGA1_c07650 at 793.258 kb on - strand, within PGA1_c07650 at 793.335 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.427 kb on - strand, within PGA1_c07650 at 793.446 kb on - strand, within PGA1_c07650 at 793.493 kb on + strand, within PGA1_c07650 at 793.503 kb on + strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.553 kb on - strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.659 kb on + strand, within PGA1_c07650 at 793.703 kb on + strand, within PGA1_c07650 at 793.733 kb on - strand, within PGA1_c07650 at 793.745 kb on + strand, within PGA1_c07650 at 793.753 kb on - strand, within PGA1_c07650 at 793.755 kb on + strand, within PGA1_c07650 at 793.758 kb on - strand, within PGA1_c07650 at 793.801 kb on + strand, within PGA1_c07650
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 790,542 + -0.7 790,569 + +0.6 790,606 + -0.3 790,614 - +0.1 790,616 + -1.0 790,624 - -0.2 790,624 - +0.7 790,654 + -0.4 790,654 + +1.3 790,654 + -0.4 790,654 + +0.6 790,654 + -2.2 790,662 - +0.7 790,662 - +1.6 790,662 - +0.8 790,662 - +0.1 790,662 - -2.2 790,803 + -1.9 790,808 + +0.2 790,808 + -1.0 790,910 - PGA1_c07630 0.21 -1.6 790,910 - PGA1_c07630 0.21 -0.6 790,939 + PGA1_c07630 0.25 -1.4 790,992 + PGA1_c07630 0.33 +0.3 791,038 + PGA1_c07630 0.39 -0.1 791,067 + PGA1_c07630 0.43 -0.0 791,111 + PGA1_c07630 0.49 -0.2 791,112 + PGA1_c07630 0.50 +0.0 791,242 - PGA1_c07630 0.68 +1.0 791,247 - PGA1_c07630 0.68 -0.4 791,301 + PGA1_c07630 0.76 -1.6 791,309 - PGA1_c07630 0.77 -0.2 791,359 + PGA1_c07630 0.84 -2.1 791,366 + PGA1_c07630 0.85 -0.4 791,372 + PGA1_c07630 0.86 +0.1 791,507 + +1.0 791,514 + +1.1 791,644 + -0.5 791,654 + +0.2 791,659 + +1.2 791,659 + +1.0 791,662 - +1.6 791,667 - -0.5 791,693 + PGA1_c07640 0.12 -1.1 791,722 - PGA1_c07640 0.14 -2.2 791,749 + PGA1_c07640 0.16 +0.8 791,759 + PGA1_c07640 0.17 -0.5 791,779 - PGA1_c07640 0.18 +1.4 791,816 + PGA1_c07640 0.21 +0.2 791,816 + PGA1_c07640 0.21 +1.6 791,841 + PGA1_c07640 0.23 +0.5 791,864 + PGA1_c07640 0.25 +0.4 791,867 - PGA1_c07640 0.25 -2.0 791,867 - PGA1_c07640 0.25 -2.2 791,867 - PGA1_c07640 0.25 -0.6 791,867 - PGA1_c07640 0.25 -0.0 791,872 - PGA1_c07640 0.26 -0.6 791,877 - PGA1_c07640 0.26 +0.8 791,962 - PGA1_c07640 0.33 -0.1 791,963 - PGA1_c07640 0.33 -1.9 791,992 + PGA1_c07640 0.35 -0.8 791,992 + PGA1_c07640 0.35 +0.3 792,000 - PGA1_c07640 0.35 +0.4 792,000 - PGA1_c07640 0.35 +1.2 792,026 + PGA1_c07640 0.38 -1.9 792,041 + PGA1_c07640 0.39 -2.4 792,049 + PGA1_c07640 0.39 -0.2 792,086 + PGA1_c07640 0.42 -1.7 792,094 - PGA1_c07640 0.43 +0.6 792,100 + PGA1_c07640 0.43 -0.4 792,106 + PGA1_c07640 0.44 -0.2 792,106 + PGA1_c07640 0.44 +0.6 792,106 + PGA1_c07640 0.44 +0.2 792,106 + PGA1_c07640 0.44 -2.2 792,106 + PGA1_c07640 0.44 -1.4 792,106 + PGA1_c07640 0.44 +0.1 792,106 + PGA1_c07640 0.44 -0.0 792,114 - PGA1_c07640 0.44 -0.3 792,227 + PGA1_c07640 0.53 +2.1 792,261 + PGA1_c07640 0.56 +1.0 792,265 - PGA1_c07640 0.56 +0.4 792,346 + PGA1_c07640 0.62 +2.1 792,346 + PGA1_c07640 0.62 -0.7 792,374 + PGA1_c07640 0.64 +0.6 792,412 + PGA1_c07640 0.67 +0.9 792,412 + PGA1_c07640 0.67 +1.1 792,413 + PGA1_c07640 0.67 -1.6 792,420 - PGA1_c07640 0.68 -1.3 792,420 - PGA1_c07640 0.68 -0.9 792,420 - PGA1_c07640 0.68 +1.5 792,420 - PGA1_c07640 0.68 +0.8 792,420 - PGA1_c07640 0.68 -1.0 792,420 - PGA1_c07640 0.68 -2.1 792,421 - PGA1_c07640 0.68 +0.9 792,487 - PGA1_c07640 0.73 +2.1 792,487 - PGA1_c07640 0.73 -0.1 792,487 - PGA1_c07640 0.73 +0.8 792,487 - PGA1_c07640 0.73 +0.3 792,555 + PGA1_c07640 0.78 -1.4 792,563 - PGA1_c07640 0.79 -0.2 792,585 - PGA1_c07640 0.81 -2.0 792,631 - PGA1_c07640 0.84 -1.2 792,631 - PGA1_c07640 0.84 +0.8 792,648 + PGA1_c07640 0.86 -1.6 792,765 + -0.2 792,810 + +1.0 792,831 + +2.5 792,831 + +1.1 792,839 + -1.3 792,844 + +0.0 792,844 + -0.2 792,852 - +0.7 792,852 - -0.2 792,852 - +0.6 792,852 - +0.1 792,887 + -0.4 792,893 - +0.6 792,893 - -1.7 792,907 - +2.0 792,943 - +0.0 792,950 + +0.0 792,977 + +0.5 792,983 - -1.9 793,066 + +1.1 793,106 + +0.3 793,167 + PGA1_c07650 0.16 +1.2 793,167 + PGA1_c07650 0.16 -1.7 793,175 - PGA1_c07650 0.17 -0.7 793,177 + PGA1_c07650 0.17 -1.6 793,192 - PGA1_c07650 0.18 -1.1 793,220 + PGA1_c07650 0.21 +0.6 793,220 + PGA1_c07650 0.21 -1.4 793,228 - PGA1_c07650 0.22 +0.4 793,258 - PGA1_c07650 0.25 +0.8 793,335 + PGA1_c07650 0.33 +0.1 793,419 + PGA1_c07650 0.41 -0.2 793,419 + PGA1_c07650 0.41 +0.1 793,419 + PGA1_c07650 0.41 -0.1 793,427 - PGA1_c07650 0.42 -1.2 793,446 - PGA1_c07650 0.44 -0.3 793,493 + PGA1_c07650 0.49 -0.9 793,503 + PGA1_c07650 0.50 -0.7 793,511 - PGA1_c07650 0.51 -0.7 793,511 - PGA1_c07650 0.51 -2.8 793,511 - PGA1_c07650 0.51 +0.5 793,511 - PGA1_c07650 0.51 +0.5 793,511 - PGA1_c07650 0.51 +1.2 793,511 - PGA1_c07650 0.51 -0.9 793,553 - PGA1_c07650 0.55 -1.8 793,566 + PGA1_c07650 0.56 +0.5 793,566 + PGA1_c07650 0.56 -1.8 793,566 + PGA1_c07650 0.56 -0.7 793,659 + PGA1_c07650 0.66 -0.5 793,703 + PGA1_c07650 0.70 +0.3 793,733 - PGA1_c07650 0.73 +0.4 793,745 + PGA1_c07650 0.74 +0.8 793,753 - PGA1_c07650 0.75 +0.5 793,755 + PGA1_c07650 0.75 +0.2 793,758 - PGA1_c07650 0.76 -0.2 793,801 + PGA1_c07650 0.80 +1.0
Or see this region's nucleotide sequence