Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07240 and PGA1_c07250 overlap by 1 nucleotides PGA1_c07250 and PGA1_c07260 are separated by 17 nucleotides
PGA1_c07240: PGA1_c07240 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) <small>(from data)</small>, at 744,289 to 745,281
_c07240
PGA1_c07250: PGA1_c07250 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) <small>(from data)</small>, at 745,281 to 747,155
_c07250
PGA1_c07260: PGA1_c07260 - putative inositol 2-dehydrogenase, at 747,173 to 748,378
_c07260
Position (kb) 745
746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 744.310 kb on - strand at 744.352 kb on + strand at 744.376 kb on - strand at 744.442 kb on - strand, within PGA1_c07240 at 744.571 kb on + strand, within PGA1_c07240 at 744.627 kb on - strand, within PGA1_c07240 at 744.723 kb on - strand, within PGA1_c07240 at 744.733 kb on + strand, within PGA1_c07240 at 744.733 kb on + strand, within PGA1_c07240 at 744.740 kb on + strand, within PGA1_c07240 at 744.741 kb on - strand, within PGA1_c07240 at 744.789 kb on + strand, within PGA1_c07240 at 744.792 kb on - strand, within PGA1_c07240 at 744.792 kb on - strand, within PGA1_c07240 at 744.827 kb on + strand, within PGA1_c07240 at 744.853 kb on - strand, within PGA1_c07240 at 744.862 kb on + strand, within PGA1_c07240 at 744.870 kb on - strand, within PGA1_c07240 at 744.889 kb on - strand, within PGA1_c07240 at 744.944 kb on - strand, within PGA1_c07240 at 744.969 kb on + strand, within PGA1_c07240 at 745.017 kb on + strand, within PGA1_c07240 at 745.049 kb on - strand, within PGA1_c07240 at 745.049 kb on - strand, within PGA1_c07240 at 745.051 kb on + strand, within PGA1_c07240 at 745.079 kb on + strand, within PGA1_c07240 at 745.089 kb on + strand, within PGA1_c07240 at 745.206 kb on + strand at 745.206 kb on + strand at 745.206 kb on + strand at 745.214 kb on - strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.259 kb on - strand at 745.259 kb on - strand at 745.259 kb on - strand at 745.288 kb on + strand at 745.296 kb on - strand at 745.383 kb on + strand at 745.398 kb on + strand at 745.406 kb on - strand at 745.462 kb on + strand at 745.470 kb on - strand, within PGA1_c07250 at 745.501 kb on + strand, within PGA1_c07250 at 745.509 kb on - strand, within PGA1_c07250 at 745.514 kb on + strand, within PGA1_c07250 at 745.518 kb on + strand, within PGA1_c07250 at 745.526 kb on - strand, within PGA1_c07250 at 745.564 kb on - strand, within PGA1_c07250 at 745.573 kb on - strand, within PGA1_c07250 at 745.617 kb on - strand, within PGA1_c07250 at 745.634 kb on + strand, within PGA1_c07250 at 745.696 kb on - strand, within PGA1_c07250 at 745.740 kb on + strand, within PGA1_c07250 at 745.765 kb on + strand, within PGA1_c07250 at 745.767 kb on - strand, within PGA1_c07250 at 745.792 kb on - strand, within PGA1_c07250 at 745.861 kb on - strand, within PGA1_c07250 at 745.907 kb on + strand, within PGA1_c07250 at 745.917 kb on + strand, within PGA1_c07250 at 745.958 kb on + strand, within PGA1_c07250 at 745.966 kb on - strand, within PGA1_c07250 at 745.966 kb on - strand, within PGA1_c07250 at 746.003 kb on + strand, within PGA1_c07250 at 746.047 kb on + strand, within PGA1_c07250 at 746.072 kb on - strand, within PGA1_c07250 at 746.072 kb on - strand, within PGA1_c07250 at 746.083 kb on + strand, within PGA1_c07250 at 746.151 kb on + strand, within PGA1_c07250 at 746.189 kb on + strand, within PGA1_c07250 at 746.306 kb on + strand, within PGA1_c07250 at 746.306 kb on + strand, within PGA1_c07250 at 746.334 kb on - strand, within PGA1_c07250 at 746.355 kb on + strand, within PGA1_c07250 at 746.370 kb on + strand, within PGA1_c07250 at 746.400 kb on + strand, within PGA1_c07250 at 746.402 kb on + strand, within PGA1_c07250 at 746.410 kb on + strand, within PGA1_c07250 at 746.426 kb on - strand, within PGA1_c07250 at 746.468 kb on + strand, within PGA1_c07250 at 746.487 kb on - strand, within PGA1_c07250 at 746.489 kb on + strand, within PGA1_c07250 at 746.504 kb on + strand, within PGA1_c07250 at 746.506 kb on - strand, within PGA1_c07250 at 746.512 kb on - strand, within PGA1_c07250 at 746.512 kb on - strand, within PGA1_c07250 at 746.555 kb on + strand, within PGA1_c07250 at 746.563 kb on + strand, within PGA1_c07250 at 746.571 kb on - strand, within PGA1_c07250 at 746.576 kb on - strand, within PGA1_c07250 at 746.709 kb on - strand, within PGA1_c07250 at 746.709 kb on - strand, within PGA1_c07250 at 746.829 kb on + strand, within PGA1_c07250 at 746.829 kb on + strand, within PGA1_c07250 at 746.829 kb on + strand, within PGA1_c07250 at 746.829 kb on + strand, within PGA1_c07250 at 746.837 kb on - strand, within PGA1_c07250 at 746.837 kb on - strand, within PGA1_c07250 at 746.844 kb on + strand, within PGA1_c07250 at 746.852 kb on + strand, within PGA1_c07250 at 746.875 kb on - strand, within PGA1_c07250 at 746.937 kb on + strand, within PGA1_c07250 at 746.937 kb on - strand, within PGA1_c07250 at 747.035 kb on + strand at 747.078 kb on - strand at 747.079 kb on + strand at 747.087 kb on - strand at 747.167 kb on + strand at 747.169 kb on - strand at 747.276 kb on - strand at 747.356 kb on + strand, within PGA1_c07260 at 747.363 kb on + strand, within PGA1_c07260 at 747.461 kb on - strand, within PGA1_c07260 at 747.492 kb on - strand, within PGA1_c07260 at 747.554 kb on + strand, within PGA1_c07260 at 747.557 kb on - strand, within PGA1_c07260 at 747.642 kb on - strand, within PGA1_c07260 at 747.670 kb on + strand, within PGA1_c07260 at 747.679 kb on - strand, within PGA1_c07260 at 747.706 kb on + strand, within PGA1_c07260 at 747.724 kb on - strand, within PGA1_c07260 at 747.803 kb on - strand, within PGA1_c07260 at 747.804 kb on - strand, within PGA1_c07260 at 747.804 kb on - strand, within PGA1_c07260 at 747.806 kb on + strand, within PGA1_c07260 at 747.812 kb on + strand, within PGA1_c07260 at 747.898 kb on + strand, within PGA1_c07260 at 747.898 kb on + strand, within PGA1_c07260 at 747.906 kb on - strand, within PGA1_c07260 at 747.906 kb on - strand, within PGA1_c07260 at 747.906 kb on - strand, within PGA1_c07260 at 747.945 kb on - strand, within PGA1_c07260 at 747.947 kb on + strand, within PGA1_c07260 at 748.052 kb on + strand, within PGA1_c07260 at 748.090 kb on - strand, within PGA1_c07260 at 748.101 kb on + strand, within PGA1_c07260 at 748.109 kb on - strand, within PGA1_c07260 at 748.139 kb on - strand, within PGA1_c07260 at 748.147 kb on + strand, within PGA1_c07260
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 744,310 - +0.0 744,352 + +0.4 744,376 - -0.7 744,442 - PGA1_c07240 0.15 +0.6 744,571 + PGA1_c07240 0.28 -2.0 744,627 - PGA1_c07240 0.34 -1.3 744,723 - PGA1_c07240 0.44 -2.9 744,733 + PGA1_c07240 0.45 +0.2 744,733 + PGA1_c07240 0.45 +0.6 744,740 + PGA1_c07240 0.45 +1.1 744,741 - PGA1_c07240 0.46 +0.7 744,789 + PGA1_c07240 0.50 -1.6 744,792 - PGA1_c07240 0.51 +0.3 744,792 - PGA1_c07240 0.51 +1.3 744,827 + PGA1_c07240 0.54 -0.8 744,853 - PGA1_c07240 0.57 +0.6 744,862 + PGA1_c07240 0.58 +1.3 744,870 - PGA1_c07240 0.59 -0.3 744,889 - PGA1_c07240 0.60 -0.4 744,944 - PGA1_c07240 0.66 +0.1 744,969 + PGA1_c07240 0.68 -0.9 745,017 + PGA1_c07240 0.73 -1.7 745,049 - PGA1_c07240 0.77 +0.2 745,049 - PGA1_c07240 0.77 -1.0 745,051 + PGA1_c07240 0.77 -0.2 745,079 + PGA1_c07240 0.80 -1.9 745,089 + PGA1_c07240 0.81 -1.9 745,206 + -1.0 745,206 + +0.2 745,206 + +0.4 745,214 - +0.7 745,251 + -1.0 745,251 + +1.8 745,251 + -1.0 745,251 + +0.8 745,251 + -0.4 745,259 - -1.8 745,259 - +0.2 745,259 - -0.1 745,288 + -0.2 745,296 - +1.4 745,383 + -0.3 745,398 + +0.2 745,406 - +0.3 745,462 + -3.3 745,470 - PGA1_c07250 0.10 +1.7 745,501 + PGA1_c07250 0.12 -0.7 745,509 - PGA1_c07250 0.12 -0.3 745,514 + PGA1_c07250 0.12 -1.4 745,518 + PGA1_c07250 0.13 -0.1 745,526 - PGA1_c07250 0.13 +0.6 745,564 - PGA1_c07250 0.15 +0.8 745,573 - PGA1_c07250 0.16 -0.9 745,617 - PGA1_c07250 0.18 +0.1 745,634 + PGA1_c07250 0.19 -0.1 745,696 - PGA1_c07250 0.22 +1.2 745,740 + PGA1_c07250 0.24 +0.0 745,765 + PGA1_c07250 0.26 -0.8 745,767 - PGA1_c07250 0.26 -0.4 745,792 - PGA1_c07250 0.27 +0.8 745,861 - PGA1_c07250 0.31 -1.8 745,907 + PGA1_c07250 0.33 +0.6 745,917 + PGA1_c07250 0.34 -0.4 745,958 + PGA1_c07250 0.36 -0.1 745,966 - PGA1_c07250 0.37 -1.7 745,966 - PGA1_c07250 0.37 +0.8 746,003 + PGA1_c07250 0.39 +0.7 746,047 + PGA1_c07250 0.41 -2.1 746,072 - PGA1_c07250 0.42 +0.2 746,072 - PGA1_c07250 0.42 +0.9 746,083 + PGA1_c07250 0.43 -1.9 746,151 + PGA1_c07250 0.46 +0.0 746,189 + PGA1_c07250 0.48 -0.1 746,306 + PGA1_c07250 0.55 -1.8 746,306 + PGA1_c07250 0.55 -0.6 746,334 - PGA1_c07250 0.56 -1.0 746,355 + PGA1_c07250 0.57 -1.0 746,370 + PGA1_c07250 0.58 -0.3 746,400 + PGA1_c07250 0.60 +0.2 746,402 + PGA1_c07250 0.60 +0.9 746,410 + PGA1_c07250 0.60 +0.7 746,426 - PGA1_c07250 0.61 +0.3 746,468 + PGA1_c07250 0.63 +1.1 746,487 - PGA1_c07250 0.64 -2.4 746,489 + PGA1_c07250 0.64 +0.8 746,504 + PGA1_c07250 0.65 -0.5 746,506 - PGA1_c07250 0.65 +1.1 746,512 - PGA1_c07250 0.66 -1.8 746,512 - PGA1_c07250 0.66 +0.9 746,555 + PGA1_c07250 0.68 -1.4 746,563 + PGA1_c07250 0.68 -0.2 746,571 - PGA1_c07250 0.69 +0.1 746,576 - PGA1_c07250 0.69 -2.3 746,709 - PGA1_c07250 0.76 +0.7 746,709 - PGA1_c07250 0.76 +1.3 746,829 + PGA1_c07250 0.83 +0.1 746,829 + PGA1_c07250 0.83 -0.1 746,829 + PGA1_c07250 0.83 -0.3 746,829 + PGA1_c07250 0.83 -0.4 746,837 - PGA1_c07250 0.83 -1.0 746,837 - PGA1_c07250 0.83 -1.8 746,844 + PGA1_c07250 0.83 +1.9 746,852 + PGA1_c07250 0.84 -1.5 746,875 - PGA1_c07250 0.85 +1.3 746,937 + PGA1_c07250 0.88 -2.1 746,937 - PGA1_c07250 0.88 +0.6 747,035 + +0.6 747,078 - +0.6 747,079 + -2.8 747,087 - -1.2 747,167 + -1.5 747,169 - -0.3 747,276 - +1.1 747,356 + PGA1_c07260 0.15 +2.6 747,363 + PGA1_c07260 0.16 -0.2 747,461 - PGA1_c07260 0.24 -1.4 747,492 - PGA1_c07260 0.26 -1.2 747,554 + PGA1_c07260 0.32 -1.3 747,557 - PGA1_c07260 0.32 +0.9 747,642 - PGA1_c07260 0.39 +0.3 747,670 + PGA1_c07260 0.41 -0.2 747,679 - PGA1_c07260 0.42 -2.3 747,706 + PGA1_c07260 0.44 -0.5 747,724 - PGA1_c07260 0.46 -0.3 747,803 - PGA1_c07260 0.52 +1.1 747,804 - PGA1_c07260 0.52 -0.5 747,804 - PGA1_c07260 0.52 +0.0 747,806 + PGA1_c07260 0.52 -2.4 747,812 + PGA1_c07260 0.53 +2.1 747,898 + PGA1_c07260 0.60 -1.3 747,898 + PGA1_c07260 0.60 +0.0 747,906 - PGA1_c07260 0.61 -0.0 747,906 - PGA1_c07260 0.61 -0.7 747,906 - PGA1_c07260 0.61 -0.4 747,945 - PGA1_c07260 0.64 +0.3 747,947 + PGA1_c07260 0.64 +1.6 748,052 + PGA1_c07260 0.73 +1.6 748,090 - PGA1_c07260 0.76 +0.7 748,101 + PGA1_c07260 0.77 +0.9 748,109 - PGA1_c07260 0.78 -0.4 748,139 - PGA1_c07260 0.80 +1.5 748,147 + PGA1_c07260 0.81 -0.9
Or see this region's nucleotide sequence