Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07080

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07060 and PGA1_c07070 overlap by 4 nucleotidesPGA1_c07070 and PGA1_c07080 are separated by 53 nucleotidesPGA1_c07080 and PGA1_c07090 are separated by 129 nucleotidesPGA1_c07090 and PGA1_c07100 are separated by 409 nucleotides PGA1_c07060: PGA1_c07060 - YtoQ family protein, at 725,898 to 726,347 _c07060 PGA1_c07070: PGA1_c07070 - acetyltransferase domain-containing protein, at 726,344 to 726,871 _c07070 PGA1_c07080: PGA1_c07080 - small-conductance mechanosensitive channel, at 726,925 to 727,731 _c07080 PGA1_c07090: PGA1_c07090 - large-conductance mechanosensitive channel, at 727,861 to 728,295 _c07090 PGA1_c07100: PGA1_c07100 - RTX toxins and related Ca2+-binding proteins, at 728,705 to 731,062 _c07100 Position (kb) 726 727 728Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 725.954 kb on - strand, within PGA1_c07060at 725.984 kb on + strand, within PGA1_c07060at 725.992 kb on - strand, within PGA1_c07060at 726.086 kb on + strand, within PGA1_c07060at 726.089 kb on - strand, within PGA1_c07060at 726.094 kb on - strand, within PGA1_c07060at 726.111 kb on - strand, within PGA1_c07060at 726.154 kb on + strand, within PGA1_c07060at 726.201 kb on - strand, within PGA1_c07060at 726.217 kb on - strand, within PGA1_c07060at 726.224 kb on + strand, within PGA1_c07060at 726.232 kb on - strand, within PGA1_c07060at 726.440 kb on - strand, within PGA1_c07070at 726.448 kb on + strand, within PGA1_c07070at 726.479 kb on - strand, within PGA1_c07070at 726.481 kb on + strand, within PGA1_c07070at 726.481 kb on + strand, within PGA1_c07070at 726.521 kb on + strand, within PGA1_c07070at 726.549 kb on + strand, within PGA1_c07070at 726.549 kb on + strand, within PGA1_c07070at 726.647 kb on + strand, within PGA1_c07070at 726.668 kb on + strand, within PGA1_c07070at 726.674 kb on + strand, within PGA1_c07070at 726.698 kb on - strand, within PGA1_c07070at 726.801 kb on - strand, within PGA1_c07070at 726.801 kb on - strand, within PGA1_c07070at 726.989 kb on - strandat 727.026 kb on + strand, within PGA1_c07080at 727.040 kb on + strand, within PGA1_c07080at 727.048 kb on - strand, within PGA1_c07080at 727.095 kb on + strand, within PGA1_c07080at 727.227 kb on - strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.261 kb on - strand, within PGA1_c07080at 727.261 kb on - strand, within PGA1_c07080at 727.261 kb on - strand, within PGA1_c07080at 727.295 kb on + strand, within PGA1_c07080at 727.328 kb on - strand, within PGA1_c07080at 727.374 kb on + strand, within PGA1_c07080at 727.374 kb on + strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.443 kb on + strand, within PGA1_c07080at 727.451 kb on - strand, within PGA1_c07080at 727.463 kb on + strand, within PGA1_c07080at 727.463 kb on - strand, within PGA1_c07080at 727.549 kb on - strand, within PGA1_c07080at 727.622 kb on - strand, within PGA1_c07080at 727.627 kb on + strand, within PGA1_c07080at 727.657 kb on + strandat 727.703 kb on + strandat 727.713 kb on + strandat 727.721 kb on - strandat 727.830 kb on - strandat 727.839 kb on + strandat 727.958 kb on - strand, within PGA1_c07090at 727.992 kb on - strand, within PGA1_c07090at 728.045 kb on - strand, within PGA1_c07090at 728.086 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.111 kb on + strand, within PGA1_c07090at 728.220 kb on - strand, within PGA1_c07090at 728.307 kb on - strandat 728.342 kb on + strandat 728.347 kb on + strandat 728.349 kb on + strandat 728.349 kb on + strandat 728.349 kb on + strandat 728.357 kb on - strandat 728.466 kb on - strandat 728.510 kb on + strandat 728.512 kb on - strandat 728.513 kb on - strandat 728.515 kb on + strandat 728.562 kb on + strandat 728.562 kb on + strandat 728.569 kb on + strandat 728.570 kb on - strandat 728.570 kb on - strandat 728.570 kb on - strandat 728.577 kb on - strandat 728.602 kb on + strandat 728.624 kb on + strandat 728.634 kb on + strandat 728.639 kb on + strandat 728.664 kb on - strandat 728.674 kb on - strandat 728.685 kb on + strandat 728.698 kb on - strandat 728.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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725,954 - PGA1_c07060 0.12 -2.0
725,984 + PGA1_c07060 0.19 +0.5
725,992 - PGA1_c07060 0.21 +1.9
726,086 + PGA1_c07060 0.42 +1.3
726,089 - PGA1_c07060 0.42 +1.4
726,094 - PGA1_c07060 0.44 -0.1
726,111 - PGA1_c07060 0.47 -0.3
726,154 + PGA1_c07060 0.57 +1.0
726,201 - PGA1_c07060 0.67 -0.1
726,217 - PGA1_c07060 0.71 -1.3
726,224 + PGA1_c07060 0.72 +1.3
726,232 - PGA1_c07060 0.74 +0.3
726,440 - PGA1_c07070 0.18 -1.3
726,448 + PGA1_c07070 0.20 -1.8
726,479 - PGA1_c07070 0.26 -0.8
726,481 + PGA1_c07070 0.26 +1.0
726,481 + PGA1_c07070 0.26 +0.5
726,521 + PGA1_c07070 0.34 -3.6
726,549 + PGA1_c07070 0.39 -1.4
726,549 + PGA1_c07070 0.39 +0.8
726,647 + PGA1_c07070 0.57 +1.4
726,668 + PGA1_c07070 0.61 +1.1
726,674 + PGA1_c07070 0.62 +1.0
726,698 - PGA1_c07070 0.67 -0.9
726,801 - PGA1_c07070 0.87 +0.4
726,801 - PGA1_c07070 0.87 -0.9
726,989 - +0.1
727,026 + PGA1_c07080 0.13 -2.2
727,040 + PGA1_c07080 0.14 -0.7
727,048 - PGA1_c07080 0.15 +0.1
727,095 + PGA1_c07080 0.21 +0.2
727,227 - PGA1_c07080 0.37 -1.7
727,253 + PGA1_c07080 0.41 +0.3
727,253 + PGA1_c07080 0.41 -0.2
727,253 + PGA1_c07080 0.41 +1.3
727,253 + PGA1_c07080 0.41 -0.9
727,253 + PGA1_c07080 0.41 -0.1
727,261 - PGA1_c07080 0.42 -2.0
727,261 - PGA1_c07080 0.42 +0.1
727,261 - PGA1_c07080 0.42 +1.0
727,295 + PGA1_c07080 0.46 +0.4
727,328 - PGA1_c07080 0.50 +0.3
727,374 + PGA1_c07080 0.56 -2.9
727,374 + PGA1_c07080 0.56 -0.9
727,382 - PGA1_c07080 0.57 -0.4
727,382 - PGA1_c07080 0.57 -0.4
727,382 - PGA1_c07080 0.57 -1.3
727,382 - PGA1_c07080 0.57 -2.2
727,382 - PGA1_c07080 0.57 -0.2
727,443 + PGA1_c07080 0.64 +2.5
727,451 - PGA1_c07080 0.65 -0.2
727,463 + PGA1_c07080 0.67 -1.8
727,463 - PGA1_c07080 0.67 -1.4
727,549 - PGA1_c07080 0.77 +0.1
727,622 - PGA1_c07080 0.86 -1.8
727,627 + PGA1_c07080 0.87 -0.2
727,657 + -1.9
727,703 + -1.6
727,713 + -0.4
727,721 - -0.3
727,830 - +1.0
727,839 + -0.0
727,958 - PGA1_c07090 0.22 -0.3
727,992 - PGA1_c07090 0.30 -3.1
728,045 - PGA1_c07090 0.42 +0.9
728,086 + PGA1_c07090 0.52 +1.1
728,111 + PGA1_c07090 0.57 -0.9
728,111 + PGA1_c07090 0.57 +0.0
728,111 + PGA1_c07090 0.57 +1.0
728,111 + PGA1_c07090 0.57 +0.1
728,111 + PGA1_c07090 0.57 -0.9
728,111 + PGA1_c07090 0.57 +0.5
728,220 - PGA1_c07090 0.83 -0.7
728,307 - -2.2
728,342 + -1.1
728,347 + -1.2
728,349 + -0.0
728,349 + +0.1
728,349 + -0.1
728,357 - +0.3
728,466 - +1.5
728,510 + +0.6
728,512 - -2.9
728,513 - +1.1
728,515 + -0.8
728,562 + -1.9
728,562 + -0.4
728,569 + -0.4
728,570 - +0.6
728,570 - -0.1
728,570 - +0.4
728,577 - +1.2
728,602 + +1.9
728,624 + +0.4
728,634 + -0.2
728,639 + -1.4
728,664 - +1.1
728,674 - -1.3
728,685 + +0.6
728,698 - -1.2
728,698 - -0.3

Or see this region's nucleotide sequence