Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06180 and PGA1_c06190 are separated by 137 nucleotides PGA1_c06190 and PGA1_c06200 are separated by 64 nucleotides PGA1_c06200 and PGA1_c06210 are separated by 12 nucleotides
PGA1_c06180: PGA1_c06180 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 631,833 to 632,762
_c06180
PGA1_c06190: PGA1_c06190 - hypothetical protein, at 632,900 to 633,391
_c06190
PGA1_c06200: PGA1_c06200 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 633,456 to 634,085
_c06200
PGA1_c06210: PGA1_c06210 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 634,098 to 634,817
_c06210
Position (kb) 632
633
634 Strain fitness (log2 ratio) -2
-1
0
1
2 at 631.920 kb on + strand at 631.920 kb on + strand at 631.928 kb on - strand, within PGA1_c06180 at 631.950 kb on - strand, within PGA1_c06180 at 631.959 kb on - strand, within PGA1_c06180 at 631.982 kb on + strand, within PGA1_c06180 at 631.985 kb on - strand, within PGA1_c06180 at 632.021 kb on - strand, within PGA1_c06180 at 632.080 kb on - strand, within PGA1_c06180 at 632.080 kb on - strand, within PGA1_c06180 at 632.093 kb on + strand, within PGA1_c06180 at 632.140 kb on - strand, within PGA1_c06180 at 632.175 kb on - strand, within PGA1_c06180 at 632.200 kb on + strand, within PGA1_c06180 at 632.313 kb on + strand, within PGA1_c06180 at 632.334 kb on + strand, within PGA1_c06180 at 632.342 kb on - strand, within PGA1_c06180 at 632.353 kb on + strand, within PGA1_c06180 at 632.374 kb on - strand, within PGA1_c06180 at 632.377 kb on + strand, within PGA1_c06180 at 632.377 kb on + strand, within PGA1_c06180 at 632.434 kb on - strand, within PGA1_c06180 at 632.449 kb on + strand, within PGA1_c06180 at 632.473 kb on + strand, within PGA1_c06180 at 632.507 kb on - strand, within PGA1_c06180 at 632.519 kb on - strand, within PGA1_c06180 at 632.602 kb on - strand, within PGA1_c06180 at 632.618 kb on - strand, within PGA1_c06180 at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.711 kb on - strand at 632.713 kb on - strand at 632.721 kb on + strand at 632.742 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.774 kb on - strand at 632.776 kb on + strand at 632.776 kb on + strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.785 kb on - strand at 632.786 kb on - strand at 632.812 kb on + strand at 632.812 kb on + strand at 632.905 kb on - strand at 632.910 kb on + strand at 632.936 kb on + strand at 632.936 kb on + strand at 632.938 kb on + strand at 632.945 kb on - strand at 632.960 kb on + strand, within PGA1_c06190 at 632.966 kb on - strand, within PGA1_c06190 at 632.968 kb on + strand, within PGA1_c06190 at 632.976 kb on - strand, within PGA1_c06190 at 633.002 kb on + strand, within PGA1_c06190 at 633.010 kb on - strand, within PGA1_c06190 at 633.023 kb on + strand, within PGA1_c06190 at 633.026 kb on - strand, within PGA1_c06190 at 633.026 kb on - strand, within PGA1_c06190 at 633.039 kb on + strand, within PGA1_c06190 at 633.042 kb on - strand, within PGA1_c06190 at 633.103 kb on - strand, within PGA1_c06190 at 633.121 kb on + strand, within PGA1_c06190 at 633.137 kb on + strand, within PGA1_c06190 at 633.184 kb on - strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.222 kb on + strand, within PGA1_c06190 at 633.228 kb on - strand, within PGA1_c06190 at 633.257 kb on - strand, within PGA1_c06190 at 633.444 kb on + strand at 633.476 kb on + strand at 633.484 kb on - strand at 633.565 kb on - strand, within PGA1_c06200 at 633.610 kb on - strand, within PGA1_c06200 at 633.695 kb on - strand, within PGA1_c06200 at 633.705 kb on + strand, within PGA1_c06200 at 633.713 kb on - strand, within PGA1_c06200 at 633.731 kb on + strand, within PGA1_c06200 at 633.830 kb on - strand, within PGA1_c06200 at 633.857 kb on + strand, within PGA1_c06200 at 633.880 kb on + strand, within PGA1_c06200 at 633.890 kb on + strand, within PGA1_c06200 at 634.051 kb on - strand at 634.074 kb on + strand at 634.111 kb on - strand at 634.240 kb on + strand, within PGA1_c06210
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 631,920 + -0.1 631,920 + -1.3 631,928 - PGA1_c06180 0.10 +0.8 631,950 - PGA1_c06180 0.13 -0.3 631,959 - PGA1_c06180 0.14 +1.3 631,982 + PGA1_c06180 0.16 -2.1 631,985 - PGA1_c06180 0.16 +1.0 632,021 - PGA1_c06180 0.20 +0.4 632,080 - PGA1_c06180 0.27 -0.7 632,080 - PGA1_c06180 0.27 -0.2 632,093 + PGA1_c06180 0.28 -1.7 632,140 - PGA1_c06180 0.33 +1.4 632,175 - PGA1_c06180 0.37 -0.2 632,200 + PGA1_c06180 0.39 -0.5 632,313 + PGA1_c06180 0.52 -2.3 632,334 + PGA1_c06180 0.54 -0.7 632,342 - PGA1_c06180 0.55 -0.7 632,353 + PGA1_c06180 0.56 +1.2 632,374 - PGA1_c06180 0.58 +0.4 632,377 + PGA1_c06180 0.58 +1.1 632,377 + PGA1_c06180 0.58 +1.0 632,434 - PGA1_c06180 0.65 -0.2 632,449 + PGA1_c06180 0.66 +1.5 632,473 + PGA1_c06180 0.69 -0.2 632,507 - PGA1_c06180 0.72 -0.1 632,519 - PGA1_c06180 0.74 -0.2 632,602 - PGA1_c06180 0.83 -0.3 632,618 - PGA1_c06180 0.84 -1.5 632,705 + +0.9 632,705 + -0.6 632,705 + +2.1 632,705 + -0.7 632,705 + -0.8 632,711 - +0.3 632,713 - +0.4 632,721 + -0.0 632,742 + -1.5 632,768 + +0.1 632,768 + +1.2 632,768 + +1.3 632,768 + +0.1 632,768 + +0.1 632,768 + -2.1 632,768 + -0.7 632,768 + -0.5 632,768 + -0.6 632,768 + -0.5 632,768 + +1.3 632,768 + -0.7 632,768 + +0.1 632,768 + -0.5 632,768 + +1.7 632,768 + -0.5 632,768 + +0.4 632,768 + -1.2 632,768 + -0.2 632,768 + -0.3 632,768 + -0.4 632,768 + -0.8 632,768 + -1.0 632,768 + +1.0 632,768 + -0.1 632,768 + -0.2 632,768 + +0.4 632,768 + +0.3 632,768 + -1.5 632,768 + -0.0 632,768 + -1.0 632,768 + -1.1 632,768 + +0.6 632,768 + -0.5 632,768 + -1.1 632,768 + -0.9 632,768 + +1.0 632,768 + +0.8 632,768 + -0.2 632,768 + -0.6 632,768 + +1.4 632,768 + +1.3 632,768 + +0.5 632,768 + -2.0 632,768 + +1.4 632,768 + -1.0 632,768 + +0.2 632,768 + +0.2 632,768 + +0.7 632,768 + -1.2 632,768 + +1.5 632,768 + +0.6 632,768 + +1.4 632,768 + +0.9 632,768 + -2.0 632,768 + +1.2 632,768 + -0.3 632,768 + +0.0 632,768 + +0.4 632,768 + +0.1 632,768 + -1.1 632,768 + -0.8 632,768 + -2.7 632,768 + -0.6 632,768 + +0.6 632,768 + +1.4 632,768 + -2.6 632,768 + +1.3 632,768 + +0.8 632,768 + +0.2 632,768 + +0.6 632,768 + +0.3 632,768 + -0.3 632,768 + -0.3 632,768 + -0.9 632,768 + +0.3 632,768 + +0.1 632,768 + +0.9 632,768 + -1.5 632,768 + +0.1 632,768 + -1.7 632,768 + +1.1 632,768 + +0.1 632,768 + +0.1 632,768 + -0.0 632,768 + +0.4 632,768 + -0.5 632,768 + -1.3 632,768 + +1.9 632,774 - -0.1 632,776 + -0.5 632,776 + +1.1 632,776 - +1.6 632,776 - +1.0 632,776 - -0.2 632,776 - -1.3 632,776 - +0.1 632,776 - -0.2 632,776 - -0.5 632,776 - +1.9 632,776 - -0.7 632,776 - -1.3 632,776 - +0.5 632,776 - +1.1 632,776 - +0.6 632,776 - -0.3 632,776 - -1.0 632,776 - -0.0 632,776 - -0.3 632,776 - +1.1 632,776 - -0.6 632,776 - +0.1 632,776 - +1.6 632,776 - +2.1 632,776 - +0.7 632,776 - -0.5 632,776 - -0.2 632,776 - -0.5 632,776 - +0.8 632,776 - -0.0 632,776 - +1.3 632,776 - -0.6 632,776 - +0.9 632,776 - +1.6 632,776 - -0.5 632,776 - +1.6 632,776 - -1.0 632,776 - -1.3 632,776 - -0.4 632,776 - -0.4 632,776 - -1.5 632,776 - -0.5 632,776 - -0.7 632,776 - -0.3 632,776 - -1.7 632,776 - +1.3 632,776 - -1.1 632,776 - +0.9 632,776 - +0.1 632,776 - -2.2 632,776 - +1.7 632,776 - +1.3 632,776 - +0.8 632,776 - +0.3 632,776 - -0.9 632,776 - +2.1 632,776 - +0.0 632,776 - +0.5 632,776 - +0.9 632,784 - -1.2 632,784 - -0.1 632,784 - +0.5 632,784 - -1.7 632,784 - -0.0 632,785 - +0.9 632,786 - -0.7 632,812 + -0.0 632,812 + -0.5 632,905 - +1.8 632,910 + +0.5 632,936 + +0.6 632,936 + +0.8 632,938 + +0.4 632,945 - +0.5 632,960 + PGA1_c06190 0.12 +0.0 632,966 - PGA1_c06190 0.13 +0.4 632,968 + PGA1_c06190 0.14 +0.3 632,976 - PGA1_c06190 0.15 +0.9 633,002 + PGA1_c06190 0.21 -0.4 633,010 - PGA1_c06190 0.22 +0.1 633,023 + PGA1_c06190 0.25 -0.0 633,026 - PGA1_c06190 0.26 -0.3 633,026 - PGA1_c06190 0.26 +1.1 633,039 + PGA1_c06190 0.28 +1.9 633,042 - PGA1_c06190 0.29 -0.0 633,103 - PGA1_c06190 0.41 +2.1 633,121 + PGA1_c06190 0.45 +1.9 633,137 + PGA1_c06190 0.48 -0.1 633,184 - PGA1_c06190 0.58 -0.2 633,201 + PGA1_c06190 0.61 -0.5 633,201 + PGA1_c06190 0.61 -2.3 633,201 + PGA1_c06190 0.61 -0.0 633,220 + PGA1_c06190 0.65 +1.6 633,220 + PGA1_c06190 0.65 +0.8 633,222 + PGA1_c06190 0.65 -0.5 633,228 - PGA1_c06190 0.67 -0.3 633,257 - PGA1_c06190 0.73 -0.6 633,444 + -1.2 633,476 + -1.1 633,484 - -0.9 633,565 - PGA1_c06200 0.17 +0.1 633,610 - PGA1_c06200 0.24 -0.9 633,695 - PGA1_c06200 0.38 +2.1 633,705 + PGA1_c06200 0.40 +0.9 633,713 - PGA1_c06200 0.41 +1.6 633,731 + PGA1_c06200 0.44 -0.6 633,830 - PGA1_c06200 0.59 -0.2 633,857 + PGA1_c06200 0.64 +1.6 633,880 + PGA1_c06200 0.67 -2.5 633,890 + PGA1_c06200 0.69 -0.6 634,051 - +0.4 634,074 + +0.5 634,111 - -0.3 634,240 + PGA1_c06210 0.20 +0.6
Or see this region's nucleotide sequence