Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06150 and PGA1_c06160 are separated by 150 nucleotides PGA1_c06160 and PGA1_c06170 are separated by 91 nucleotides PGA1_c06170 and PGA1_c06180 are separated by 354 nucleotides
PGA1_c06150: PGA1_c06150 - Flp pilus assembly protein CpaB-like protein, at 630,014 to 630,874
_c06150
PGA1_c06160: PGA1_c06160 - hypothetical protein, at 631,025 to 631,201
_c06160
PGA1_c06170: PGA1_c06170 - hypothetical protein, at 631,293 to 631,478
_c06170
PGA1_c06180: PGA1_c06180 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 631,833 to 632,762
_c06180
Position (kb) 631
632 Strain fitness (log2 ratio) -2
-1
0
1
2 at 630.307 kb on + strand, within PGA1_c06150 at 630.322 kb on + strand, within PGA1_c06150 at 630.332 kb on + strand, within PGA1_c06150 at 630.337 kb on + strand, within PGA1_c06150 at 630.346 kb on - strand, within PGA1_c06150 at 630.413 kb on - strand, within PGA1_c06150 at 630.439 kb on + strand, within PGA1_c06150 at 630.439 kb on + strand, within PGA1_c06150 at 630.451 kb on + strand, within PGA1_c06150 at 630.485 kb on + strand, within PGA1_c06150 at 630.549 kb on - strand, within PGA1_c06150 at 630.566 kb on + strand, within PGA1_c06150 at 630.566 kb on + strand, within PGA1_c06150 at 630.571 kb on + strand, within PGA1_c06150 at 630.574 kb on - strand, within PGA1_c06150 at 630.574 kb on - strand, within PGA1_c06150 at 630.594 kb on - strand, within PGA1_c06150 at 630.674 kb on - strand, within PGA1_c06150 at 630.683 kb on + strand, within PGA1_c06150 at 630.683 kb on + strand, within PGA1_c06150 at 630.691 kb on - strand, within PGA1_c06150 at 630.707 kb on - strand, within PGA1_c06150 at 630.774 kb on + strand, within PGA1_c06150 at 630.830 kb on - strand at 630.835 kb on - strand at 630.863 kb on - strand at 630.863 kb on - strand at 630.884 kb on - strand at 630.890 kb on - strand at 630.961 kb on + strand at 630.963 kb on + strand at 631.018 kb on + strand at 631.021 kb on - strand at 631.026 kb on - strand at 631.044 kb on + strand, within PGA1_c06160 at 631.046 kb on + strand, within PGA1_c06160 at 631.085 kb on + strand, within PGA1_c06160 at 631.114 kb on - strand, within PGA1_c06160 at 631.147 kb on + strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.194 kb on - strand at 631.215 kb on + strand at 631.280 kb on + strand at 631.315 kb on - strand, within PGA1_c06170 at 631.322 kb on + strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.341 kb on + strand, within PGA1_c06170 at 631.389 kb on - strand, within PGA1_c06170 at 631.407 kb on + strand, within PGA1_c06170 at 631.412 kb on + strand, within PGA1_c06170 at 631.412 kb on + strand, within PGA1_c06170 at 631.420 kb on - strand, within PGA1_c06170 at 631.440 kb on + strand, within PGA1_c06170 at 631.478 kb on + strand at 631.480 kb on + strand at 631.486 kb on - strand at 631.488 kb on + strand at 631.488 kb on + strand at 631.496 kb on - strand at 631.539 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.552 kb on - strand at 631.552 kb on - strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.557 kb on - strand at 631.557 kb on - strand at 631.557 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.567 kb on - strand at 631.568 kb on + strand at 631.569 kb on + strand at 631.569 kb on + strand at 631.576 kb on + strand at 631.576 kb on - strand at 631.576 kb on - strand at 631.591 kb on - strand at 631.593 kb on + strand at 631.610 kb on - strand at 631.610 kb on - strand at 631.624 kb on + strand at 631.632 kb on - strand at 631.634 kb on + strand at 631.634 kb on + strand at 631.642 kb on - strand at 631.673 kb on - strand at 631.721 kb on - strand at 631.721 kb on - strand at 631.721 kb on - strand at 631.730 kb on - strand at 631.845 kb on - strand at 631.865 kb on + strand at 631.870 kb on + strand at 631.870 kb on + strand at 631.870 kb on + strand at 631.897 kb on - strand at 631.920 kb on + strand at 631.920 kb on + strand at 631.928 kb on - strand, within PGA1_c06180 at 631.950 kb on - strand, within PGA1_c06180 at 631.959 kb on - strand, within PGA1_c06180 at 631.982 kb on + strand, within PGA1_c06180 at 631.985 kb on - strand, within PGA1_c06180 at 632.021 kb on - strand, within PGA1_c06180 at 632.080 kb on - strand, within PGA1_c06180 at 632.080 kb on - strand, within PGA1_c06180 at 632.093 kb on + strand, within PGA1_c06180 at 632.140 kb on - strand, within PGA1_c06180 at 632.175 kb on - strand, within PGA1_c06180 at 632.200 kb on + strand, within PGA1_c06180 at 632.313 kb on + strand, within PGA1_c06180 at 632.334 kb on + strand, within PGA1_c06180 at 632.342 kb on - strand, within PGA1_c06180 at 632.353 kb on + strand, within PGA1_c06180 at 632.374 kb on - strand, within PGA1_c06180 at 632.377 kb on + strand, within PGA1_c06180 at 632.377 kb on + strand, within PGA1_c06180 at 632.434 kb on - strand, within PGA1_c06180 at 632.449 kb on + strand, within PGA1_c06180 at 632.473 kb on + strand, within PGA1_c06180
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 630,307 + PGA1_c06150 0.34 +0.4 630,322 + PGA1_c06150 0.36 -2.4 630,332 + PGA1_c06150 0.37 +1.0 630,337 + PGA1_c06150 0.38 +0.1 630,346 - PGA1_c06150 0.39 -1.5 630,413 - PGA1_c06150 0.46 -0.1 630,439 + PGA1_c06150 0.49 -2.0 630,439 + PGA1_c06150 0.49 +0.5 630,451 + PGA1_c06150 0.51 -0.2 630,485 + PGA1_c06150 0.55 +0.3 630,549 - PGA1_c06150 0.62 -1.6 630,566 + PGA1_c06150 0.64 -0.1 630,566 + PGA1_c06150 0.64 -1.6 630,571 + PGA1_c06150 0.65 +1.2 630,574 - PGA1_c06150 0.65 -0.7 630,574 - PGA1_c06150 0.65 -0.2 630,594 - PGA1_c06150 0.67 +0.0 630,674 - PGA1_c06150 0.77 -1.8 630,683 + PGA1_c06150 0.78 +0.5 630,683 + PGA1_c06150 0.78 +0.4 630,691 - PGA1_c06150 0.79 -0.2 630,707 - PGA1_c06150 0.80 +0.1 630,774 + PGA1_c06150 0.88 +0.5 630,830 - +0.7 630,835 - +0.9 630,863 - -1.8 630,863 - -0.6 630,884 - +1.5 630,890 - -1.7 630,961 + +0.4 630,963 + +0.1 631,018 + +0.2 631,021 - -1.0 631,026 - +0.1 631,044 + PGA1_c06160 0.11 +1.7 631,046 + PGA1_c06160 0.12 +1.2 631,085 + PGA1_c06160 0.34 +0.0 631,114 - PGA1_c06160 0.50 -0.7 631,147 + PGA1_c06160 0.69 -1.6 631,155 - PGA1_c06160 0.73 -0.7 631,155 - PGA1_c06160 0.73 +1.4 631,155 - PGA1_c06160 0.73 +0.9 631,194 - +1.4 631,215 + +0.1 631,280 + -0.1 631,315 - PGA1_c06170 0.12 -1.3 631,322 + PGA1_c06170 0.16 +0.8 631,330 - PGA1_c06170 0.20 -1.2 631,330 - PGA1_c06170 0.20 -1.0 631,330 - PGA1_c06170 0.20 -0.6 631,341 + PGA1_c06170 0.26 +2.1 631,389 - PGA1_c06170 0.52 +0.8 631,407 + PGA1_c06170 0.61 -0.8 631,412 + PGA1_c06170 0.64 -0.9 631,412 + PGA1_c06170 0.64 -0.7 631,420 - PGA1_c06170 0.68 +0.1 631,440 + PGA1_c06170 0.79 -0.3 631,478 + +0.5 631,480 + +1.6 631,486 - +1.1 631,488 + +0.3 631,488 + -0.5 631,496 - +0.3 631,539 + +0.6 631,544 + +0.4 631,544 + -1.1 631,544 + +1.5 631,544 + +0.5 631,544 + +0.8 631,544 + +0.5 631,544 + +2.0 631,544 + -0.9 631,544 + +1.5 631,544 + -0.9 631,552 - -0.6 631,552 - -0.9 631,554 + +1.0 631,554 + -0.9 631,554 + +0.9 631,554 + +1.0 631,554 + -0.6 631,557 - -1.6 631,557 - +0.4 631,557 - +1.6 631,562 - +0.6 631,562 - -2.0 631,562 - +0.3 631,562 - -0.3 631,562 - +0.4 631,567 - +0.3 631,568 + -1.5 631,569 + -1.7 631,569 + -0.9 631,576 + -0.0 631,576 - +1.6 631,576 - -1.4 631,591 - +2.1 631,593 + -0.2 631,610 - -0.0 631,610 - -0.5 631,624 + -1.0 631,632 - -1.3 631,634 + -0.3 631,634 + +0.2 631,642 - +0.5 631,673 - -0.4 631,721 - +2.0 631,721 - +0.6 631,721 - +0.5 631,730 - -0.5 631,845 - -2.0 631,865 + +0.0 631,870 + -1.7 631,870 + +0.5 631,870 + -0.2 631,897 - +2.5 631,920 + -0.1 631,920 + -1.3 631,928 - PGA1_c06180 0.10 +0.8 631,950 - PGA1_c06180 0.13 -0.3 631,959 - PGA1_c06180 0.14 +1.3 631,982 + PGA1_c06180 0.16 -2.1 631,985 - PGA1_c06180 0.16 +1.0 632,021 - PGA1_c06180 0.20 +0.4 632,080 - PGA1_c06180 0.27 -0.7 632,080 - PGA1_c06180 0.27 -0.2 632,093 + PGA1_c06180 0.28 -1.7 632,140 - PGA1_c06180 0.33 +1.4 632,175 - PGA1_c06180 0.37 -0.2 632,200 + PGA1_c06180 0.39 -0.5 632,313 + PGA1_c06180 0.52 -2.3 632,334 + PGA1_c06180 0.54 -0.7 632,342 - PGA1_c06180 0.55 -0.7 632,353 + PGA1_c06180 0.56 +1.2 632,374 - PGA1_c06180 0.58 +0.4 632,377 + PGA1_c06180 0.58 +1.1 632,377 + PGA1_c06180 0.58 +1.0 632,434 - PGA1_c06180 0.65 -0.2 632,449 + PGA1_c06180 0.66 +1.5 632,473 + PGA1_c06180 0.69 -0.2
Or see this region's nucleotide sequence