Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05320 and PGA1_c05330 overlap by 4 nucleotides PGA1_c05330 and PGA1_c05340 overlap by 4 nucleotides PGA1_c05340 and PGA1_c05350 overlap by 4 nucleotides
PGA1_c05320: PGA1_c05320 - hypothetical protein, at 528,577 to 531,147
_c05320
PGA1_c05330: PGA1_c05330 - hypothetical protein, at 531,144 to 532,046
_c05330
PGA1_c05340: PGA1_c05340 - 4'-phosphopantetheinyl transferase-like protein, at 532,043 to 532,756
_c05340
PGA1_c05350: PGA1_c05350 - dimodular nonribosomal peptide synthetase, at 532,753 to 537,387
_c05350
Position (kb) 531
532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.183 kb on - strand, within PGA1_c05320 at 530.268 kb on - strand, within PGA1_c05320 at 530.273 kb on - strand, within PGA1_c05320 at 530.273 kb on - strand, within PGA1_c05320 at 530.283 kb on - strand, within PGA1_c05320 at 530.477 kb on + strand, within PGA1_c05320 at 530.559 kb on + strand, within PGA1_c05320 at 530.562 kb on - strand, within PGA1_c05320 at 530.570 kb on + strand, within PGA1_c05320 at 530.578 kb on - strand, within PGA1_c05320 at 530.578 kb on - strand, within PGA1_c05320 at 530.589 kb on + strand, within PGA1_c05320 at 530.597 kb on - strand, within PGA1_c05320 at 530.600 kb on + strand, within PGA1_c05320 at 530.688 kb on - strand, within PGA1_c05320 at 530.747 kb on - strand, within PGA1_c05320 at 530.758 kb on + strand, within PGA1_c05320 at 530.758 kb on + strand, within PGA1_c05320 at 530.758 kb on + strand, within PGA1_c05320 at 530.763 kb on + strand, within PGA1_c05320 at 530.763 kb on + strand, within PGA1_c05320 at 530.767 kb on + strand, within PGA1_c05320 at 530.814 kb on + strand, within PGA1_c05320 at 530.843 kb on + strand, within PGA1_c05320 at 530.942 kb on + strand at 530.942 kb on + strand at 530.947 kb on + strand at 530.950 kb on - strand at 530.952 kb on + strand at 530.960 kb on - strand at 530.960 kb on - strand at 530.967 kb on + strand at 531.027 kb on - strand at 531.030 kb on + strand at 531.037 kb on + strand at 531.066 kb on + strand at 531.124 kb on + strand at 531.168 kb on - strand at 531.168 kb on - strand at 531.214 kb on - strand at 531.228 kb on + strand at 531.309 kb on + strand, within PGA1_c05330 at 531.420 kb on + strand, within PGA1_c05330 at 531.428 kb on - strand, within PGA1_c05330 at 531.445 kb on + strand, within PGA1_c05330 at 531.571 kb on + strand, within PGA1_c05330 at 531.582 kb on - strand, within PGA1_c05330 at 531.633 kb on + strand, within PGA1_c05330 at 531.633 kb on + strand, within PGA1_c05330 at 531.638 kb on + strand, within PGA1_c05330 at 531.641 kb on - strand, within PGA1_c05330 at 531.641 kb on - strand, within PGA1_c05330 at 531.646 kb on - strand, within PGA1_c05330 at 531.721 kb on + strand, within PGA1_c05330 at 531.736 kb on + strand, within PGA1_c05330 at 531.801 kb on + strand, within PGA1_c05330 at 531.840 kb on - strand, within PGA1_c05330 at 531.902 kb on + strand, within PGA1_c05330 at 531.931 kb on - strand, within PGA1_c05330 at 531.960 kb on + strand at 531.982 kb on - strand at 532.017 kb on - strand at 532.782 kb on + strand at 532.865 kb on + strand at 532.905 kb on + strand at 532.995 kb on - strand at 533.035 kb on - strand at 533.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 530,183 - PGA1_c05320 0.62 +0.4 530,268 - PGA1_c05320 0.66 -0.5 530,273 - PGA1_c05320 0.66 +0.5 530,273 - PGA1_c05320 0.66 -0.7 530,283 - PGA1_c05320 0.66 -0.6 530,477 + PGA1_c05320 0.74 -0.4 530,559 + PGA1_c05320 0.77 -0.2 530,562 - PGA1_c05320 0.77 +0.8 530,570 + PGA1_c05320 0.78 +0.8 530,578 - PGA1_c05320 0.78 -0.2 530,578 - PGA1_c05320 0.78 -0.6 530,589 + PGA1_c05320 0.78 +2.1 530,597 - PGA1_c05320 0.79 -0.5 530,600 + PGA1_c05320 0.79 -0.6 530,688 - PGA1_c05320 0.82 +0.2 530,747 - PGA1_c05320 0.84 +0.1 530,758 + PGA1_c05320 0.85 +1.1 530,758 + PGA1_c05320 0.85 -1.5 530,758 + PGA1_c05320 0.85 -0.1 530,763 + PGA1_c05320 0.85 -0.7 530,763 + PGA1_c05320 0.85 +0.5 530,767 + PGA1_c05320 0.85 +0.1 530,814 + PGA1_c05320 0.87 -1.8 530,843 + PGA1_c05320 0.88 -0.2 530,942 + +0.6 530,942 + +1.0 530,947 + -1.3 530,950 - +0.9 530,952 + -1.5 530,960 - +1.2 530,960 - -0.5 530,967 + +0.1 531,027 - +1.6 531,030 + +0.7 531,037 + -0.9 531,066 + +0.6 531,124 + +1.3 531,168 - -0.4 531,168 - -1.3 531,214 - +0.2 531,228 + +1.2 531,309 + PGA1_c05330 0.18 -0.6 531,420 + PGA1_c05330 0.31 +1.2 531,428 - PGA1_c05330 0.31 -0.8 531,445 + PGA1_c05330 0.33 -0.5 531,571 + PGA1_c05330 0.47 -0.5 531,582 - PGA1_c05330 0.49 +0.3 531,633 + PGA1_c05330 0.54 +0.9 531,633 + PGA1_c05330 0.54 -0.2 531,638 + PGA1_c05330 0.55 -0.6 531,641 - PGA1_c05330 0.55 -2.7 531,641 - PGA1_c05330 0.55 -0.9 531,646 - PGA1_c05330 0.56 +0.9 531,721 + PGA1_c05330 0.64 -1.1 531,736 + PGA1_c05330 0.66 -1.0 531,801 + PGA1_c05330 0.73 -0.7 531,840 - PGA1_c05330 0.77 -0.7 531,902 + PGA1_c05330 0.84 -0.7 531,931 - PGA1_c05330 0.87 +0.9 531,960 + -0.3 531,982 - +2.1 532,017 - +0.1 532,782 + -0.5 532,865 + +1.3 532,905 + -2.3 532,995 - -0.0 533,035 - +0.3 533,046 - +1.0
Or see this region's nucleotide sequence