Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00470

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00460 and PGA1_c00470 are separated by 169 nucleotidesPGA1_c00470 and PGA1_c00480 are separated by 36 nucleotides PGA1_c00460: PGA1_c00460 - adenylate cyclase domain-containing protein, at 50,811 to 52,025 _c00460 PGA1_c00470: PGA1_c00470 - hypothetical protein, at 52,195 to 52,506 _c00470 PGA1_c00480: PGA1_c00480 - CAAX prenyl protease-related protein, at 52,543 to 54,171 _c00480 Position (kb) 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.198 kb on - strand, within PGA1_c00460at 51.233 kb on + strand, within PGA1_c00460at 51.239 kb on - strand, within PGA1_c00460at 51.239 kb on - strand, within PGA1_c00460at 51.256 kb on + strand, within PGA1_c00460at 51.268 kb on + strand, within PGA1_c00460at 51.295 kb on + strand, within PGA1_c00460at 51.295 kb on - strand, within PGA1_c00460at 51.312 kb on - strand, within PGA1_c00460at 51.387 kb on + strand, within PGA1_c00460at 51.398 kb on + strand, within PGA1_c00460at 51.398 kb on + strand, within PGA1_c00460at 51.398 kb on + strand, within PGA1_c00460at 51.420 kb on + strand, within PGA1_c00460at 51.487 kb on + strand, within PGA1_c00460at 51.500 kb on - strand, within PGA1_c00460at 51.502 kb on + strand, within PGA1_c00460at 51.510 kb on - strand, within PGA1_c00460at 51.532 kb on + strand, within PGA1_c00460at 51.590 kb on + strand, within PGA1_c00460at 51.640 kb on + strand, within PGA1_c00460at 51.663 kb on - strand, within PGA1_c00460at 51.663 kb on - strand, within PGA1_c00460at 51.673 kb on - strand, within PGA1_c00460at 51.702 kb on - strand, within PGA1_c00460at 51.726 kb on + strand, within PGA1_c00460at 51.733 kb on + strand, within PGA1_c00460at 51.734 kb on - strand, within PGA1_c00460at 51.738 kb on + strand, within PGA1_c00460at 51.738 kb on + strand, within PGA1_c00460at 51.738 kb on + strand, within PGA1_c00460at 51.738 kb on + strand, within PGA1_c00460at 51.738 kb on + strand, within PGA1_c00460at 51.741 kb on - strand, within PGA1_c00460at 51.746 kb on - strand, within PGA1_c00460at 51.754 kb on + strand, within PGA1_c00460at 51.768 kb on + strand, within PGA1_c00460at 51.774 kb on - strand, within PGA1_c00460at 51.774 kb on - strand, within PGA1_c00460at 51.891 kb on - strand, within PGA1_c00460at 51.906 kb on - strandat 51.906 kb on - strandat 51.930 kb on + strandat 51.943 kb on + strandat 51.943 kb on + strandat 51.943 kb on + strandat 51.943 kb on + strandat 51.951 kb on - strandat 51.951 kb on - strandat 51.951 kb on - strandat 51.961 kb on - strandat 51.961 kb on - strandat 51.982 kb on + strandat 51.990 kb on - strandat 52.004 kb on - strandat 52.019 kb on + strandat 52.109 kb on - strandat 52.111 kb on + strandat 52.117 kb on + strandat 52.117 kb on + strandat 52.117 kb on + strandat 52.117 kb on + strandat 52.118 kb on + strandat 52.118 kb on + strandat 52.118 kb on + strandat 52.118 kb on + strandat 52.119 kb on - strandat 52.126 kb on - strandat 52.126 kb on - strandat 52.126 kb on - strandat 52.153 kb on + strandat 52.154 kb on + strandat 52.158 kb on + strandat 52.158 kb on + strandat 52.158 kb on + strandat 52.161 kb on - strandat 52.167 kb on - strandat 52.169 kb on + strandat 52.172 kb on - strandat 52.172 kb on - strandat 52.183 kb on + strandat 52.183 kb on + strandat 52.199 kb on + strandat 52.207 kb on - strandat 52.209 kb on + strandat 52.209 kb on + strandat 52.217 kb on - strandat 52.217 kb on - strandat 52.273 kb on - strand, within PGA1_c00470at 52.321 kb on + strand, within PGA1_c00470at 52.323 kb on - strand, within PGA1_c00470at 52.329 kb on - strand, within PGA1_c00470at 52.396 kb on - strand, within PGA1_c00470at 52.421 kb on + strand, within PGA1_c00470at 52.421 kb on + strand, within PGA1_c00470at 52.421 kb on + strand, within PGA1_c00470at 52.421 kb on + strand, within PGA1_c00470at 52.426 kb on + strand, within PGA1_c00470at 52.429 kb on - strand, within PGA1_c00470at 52.429 kb on - strand, within PGA1_c00470at 52.429 kb on - strand, within PGA1_c00470at 52.464 kb on - strand, within PGA1_c00470at 52.477 kb on - strandat 52.490 kb on + strandat 52.500 kb on + strandat 52.541 kb on + strandat 52.549 kb on - strandat 52.554 kb on - strandat 52.554 kb on - strandat 52.632 kb on - strandat 52.634 kb on + strandat 52.634 kb on + strandat 52.642 kb on + strandat 52.642 kb on - strandat 52.829 kb on - strand, within PGA1_c00480at 52.832 kb on - strand, within PGA1_c00480at 52.847 kb on - strand, within PGA1_c00480at 52.850 kb on + strand, within PGA1_c00480at 52.858 kb on - strand, within PGA1_c00480at 52.869 kb on + strand, within PGA1_c00480at 52.877 kb on - strand, within PGA1_c00480at 52.882 kb on - strand, within PGA1_c00480at 52.896 kb on + strand, within PGA1_c00480at 52.953 kb on + strand, within PGA1_c00480at 52.975 kb on + strand, within PGA1_c00480at 52.980 kb on + strand, within PGA1_c00480at 52.980 kb on + strand, within PGA1_c00480at 52.980 kb on + strand, within PGA1_c00480at 52.983 kb on - strand, within PGA1_c00480at 52.983 kb on - strand, within PGA1_c00480at 52.983 kb on - strand, within PGA1_c00480at 52.985 kb on + strand, within PGA1_c00480at 53.043 kb on - strand, within PGA1_c00480at 53.053 kb on - strand, within PGA1_c00480at 53.053 kb on - strand, within PGA1_c00480at 53.065 kb on + strand, within PGA1_c00480at 53.065 kb on + strand, within PGA1_c00480at 53.065 kb on + strand, within PGA1_c00480at 53.067 kb on + strand, within PGA1_c00480at 53.067 kb on + strand, within PGA1_c00480at 53.067 kb on + strand, within PGA1_c00480at 53.070 kb on + strand, within PGA1_c00480at 53.073 kb on - strand, within PGA1_c00480at 53.073 kb on - strand, within PGA1_c00480at 53.073 kb on - strand, within PGA1_c00480at 53.075 kb on + strand, within PGA1_c00480at 53.075 kb on - strand, within PGA1_c00480at 53.075 kb on - strand, within PGA1_c00480at 53.075 kb on - strand, within PGA1_c00480at 53.075 kb on - strand, within PGA1_c00480at 53.075 kb on - strand, within PGA1_c00480at 53.075 kb on - strand, within PGA1_c00480at 53.118 kb on + strand, within PGA1_c00480at 53.118 kb on - strand, within PGA1_c00480at 53.126 kb on - strand, within PGA1_c00480at 53.126 kb on - strand, within PGA1_c00480at 53.153 kb on + strand, within PGA1_c00480at 53.206 kb on + strand, within PGA1_c00480at 53.239 kb on + strand, within PGA1_c00480at 53.263 kb on + strand, within PGA1_c00480at 53.273 kb on + strand, within PGA1_c00480at 53.282 kb on + strand, within PGA1_c00480at 53.329 kb on + strand, within PGA1_c00480at 53.334 kb on + strand, within PGA1_c00480at 53.342 kb on - strand, within PGA1_c00480at 53.349 kb on - strand, within PGA1_c00480at 53.362 kb on + strand, within PGA1_c00480at 53.375 kb on - strand, within PGA1_c00480at 53.424 kb on + strand, within PGA1_c00480at 53.457 kb on - strand, within PGA1_c00480

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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51,198 - PGA1_c00460 0.32 -0.8
51,233 + PGA1_c00460 0.35 -0.9
51,239 - PGA1_c00460 0.35 +0.4
51,239 - PGA1_c00460 0.35 -1.5
51,256 + PGA1_c00460 0.37 +0.9
51,268 + PGA1_c00460 0.38 -0.4
51,295 + PGA1_c00460 0.40 -0.7
51,295 - PGA1_c00460 0.40 -2.0
51,312 - PGA1_c00460 0.41 -2.1
51,387 + PGA1_c00460 0.47 -1.8
51,398 + PGA1_c00460 0.48 -1.7
51,398 + PGA1_c00460 0.48 -0.4
51,398 + PGA1_c00460 0.48 -0.7
51,420 + PGA1_c00460 0.50 -0.7
51,487 + PGA1_c00460 0.56 +0.2
51,500 - PGA1_c00460 0.57 +0.1
51,502 + PGA1_c00460 0.57 +0.1
51,510 - PGA1_c00460 0.58 +0.6
51,532 + PGA1_c00460 0.59 +0.5
51,590 + PGA1_c00460 0.64 -0.7
51,640 + PGA1_c00460 0.68 +0.7
51,663 - PGA1_c00460 0.70 +2.4
51,663 - PGA1_c00460 0.70 -1.5
51,673 - PGA1_c00460 0.71 +0.1
51,702 - PGA1_c00460 0.73 -0.9
51,726 + PGA1_c00460 0.75 -1.8
51,733 + PGA1_c00460 0.76 -0.1
51,734 - PGA1_c00460 0.76 -1.7
51,738 + PGA1_c00460 0.76 -0.1
51,738 + PGA1_c00460 0.76 -1.6
51,738 + PGA1_c00460 0.76 +0.1
51,738 + PGA1_c00460 0.76 -0.3
51,738 + PGA1_c00460 0.76 +2.0
51,741 - PGA1_c00460 0.77 -0.5
51,746 - PGA1_c00460 0.77 -0.4
51,754 + PGA1_c00460 0.78 -0.4
51,768 + PGA1_c00460 0.79 +0.1
51,774 - PGA1_c00460 0.79 -2.1
51,774 - PGA1_c00460 0.79 -0.6
51,891 - PGA1_c00460 0.89 -2.1
51,906 - -1.3
51,906 - -0.0
51,930 + +0.9
51,943 + -0.3
51,943 + -1.4
51,943 + +1.8
51,943 + -1.5
51,951 - -0.2
51,951 - -1.7
51,951 - -1.2
51,961 - -0.0
51,961 - -0.7
51,982 + +0.3
51,990 - +0.2
52,004 - +0.8
52,019 + +0.9
52,109 - +0.8
52,111 + +0.8
52,117 + -3.4
52,117 + -1.4
52,117 + +1.8
52,117 + +0.2
52,118 + +0.2
52,118 + +0.2
52,118 + +0.0
52,118 + -0.1
52,119 - -0.2
52,126 - -2.1
52,126 - -0.4
52,126 - -0.2
52,153 + +2.8
52,154 + +0.7
52,158 + +0.3
52,158 + -1.8
52,158 + -0.5
52,161 - -0.7
52,167 - +0.4
52,169 + +0.1
52,172 - -0.5
52,172 - -0.9
52,183 + +0.1
52,183 + +0.7
52,199 + -1.1
52,207 - -1.5
52,209 + +0.7
52,209 + -1.5
52,217 - -1.5
52,217 - -1.1
52,273 - PGA1_c00470 0.25 -1.7
52,321 + PGA1_c00470 0.40 -1.8
52,323 - PGA1_c00470 0.41 -0.0
52,329 - PGA1_c00470 0.43 -0.5
52,396 - PGA1_c00470 0.64 -0.1
52,421 + PGA1_c00470 0.72 -0.4
52,421 + PGA1_c00470 0.72 -0.2
52,421 + PGA1_c00470 0.72 -1.6
52,421 + PGA1_c00470 0.72 -1.0
52,426 + PGA1_c00470 0.74 -0.6
52,429 - PGA1_c00470 0.75 -2.5
52,429 - PGA1_c00470 0.75 -0.7
52,429 - PGA1_c00470 0.75 -0.2
52,464 - PGA1_c00470 0.86 +0.8
52,477 - +2.0
52,490 + -0.9
52,500 + +0.4
52,541 + +0.7
52,549 - +0.1
52,554 - +0.2
52,554 - +1.4
52,632 - -0.1
52,634 + -1.5
52,634 + +1.9
52,642 + +0.8
52,642 - -2.1
52,829 - PGA1_c00480 0.18 -0.5
52,832 - PGA1_c00480 0.18 -1.2
52,847 - PGA1_c00480 0.19 -0.2
52,850 + PGA1_c00480 0.19 -1.4
52,858 - PGA1_c00480 0.19 -0.6
52,869 + PGA1_c00480 0.20 +0.0
52,877 - PGA1_c00480 0.21 +0.6
52,882 - PGA1_c00480 0.21 +0.2
52,896 + PGA1_c00480 0.22 -0.2
52,953 + PGA1_c00480 0.25 -0.3
52,975 + PGA1_c00480 0.27 +0.8
52,980 + PGA1_c00480 0.27 +0.7
52,980 + PGA1_c00480 0.27 +2.7
52,980 + PGA1_c00480 0.27 +0.5
52,983 - PGA1_c00480 0.27 +1.1
52,983 - PGA1_c00480 0.27 +1.2
52,983 - PGA1_c00480 0.27 +0.0
52,985 + PGA1_c00480 0.27 -1.9
53,043 - PGA1_c00480 0.31 -0.7
53,053 - PGA1_c00480 0.31 -0.4
53,053 - PGA1_c00480 0.31 -0.5
53,065 + PGA1_c00480 0.32 -0.1
53,065 + PGA1_c00480 0.32 +0.6
53,065 + PGA1_c00480 0.32 +0.8
53,067 + PGA1_c00480 0.32 -0.0
53,067 + PGA1_c00480 0.32 +1.0
53,067 + PGA1_c00480 0.32 +0.3
53,070 + PGA1_c00480 0.32 -1.6
53,073 - PGA1_c00480 0.33 -1.2
53,073 - PGA1_c00480 0.33 +0.4
53,073 - PGA1_c00480 0.33 -0.5
53,075 + PGA1_c00480 0.33 -0.5
53,075 - PGA1_c00480 0.33 -0.5
53,075 - PGA1_c00480 0.33 -0.2
53,075 - PGA1_c00480 0.33 -1.1
53,075 - PGA1_c00480 0.33 +1.4
53,075 - PGA1_c00480 0.33 -0.0
53,075 - PGA1_c00480 0.33 -0.5
53,118 + PGA1_c00480 0.35 +2.1
53,118 - PGA1_c00480 0.35 -1.2
53,126 - PGA1_c00480 0.36 +0.1
53,126 - PGA1_c00480 0.36 +0.1
53,153 + PGA1_c00480 0.37 +0.1
53,206 + PGA1_c00480 0.41 -0.7
53,239 + PGA1_c00480 0.43 +0.1
53,263 + PGA1_c00480 0.44 -0.9
53,273 + PGA1_c00480 0.45 -0.7
53,282 + PGA1_c00480 0.45 -0.6
53,329 + PGA1_c00480 0.48 +1.5
53,334 + PGA1_c00480 0.49 +0.1
53,342 - PGA1_c00480 0.49 -0.2
53,349 - PGA1_c00480 0.49 -0.2
53,362 + PGA1_c00480 0.50 +1.3
53,375 - PGA1_c00480 0.51 -2.4
53,424 + PGA1_c00480 0.54 +1.2
53,457 - PGA1_c00480 0.56 -0.2

Or see this region's nucleotide sequence