Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00390 and PGA1_65p00400 are separated by 148 nucleotides PGA1_65p00400 and PGA1_65p00410 are separated by 17 nucleotides
PGA1_65p00390: PGA1_65p00390 - UDP-galactopyranose mutase Glf, at 53,848 to 55,011
_65p00390
PGA1_65p00400: PGA1_65p00400 - ABC transporter, ATP-binding protein, at 55,160 to 55,816
_65p00400
PGA1_65p00410: PGA1_65p00410 - putative olysaccharide export protein, at 55,834 to 57,264
_65p00410
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.174 kb on - strand, within PGA1_65p00390 at 54.319 kb on + strand, within PGA1_65p00390 at 54.407 kb on + strand, within PGA1_65p00390 at 54.415 kb on - strand, within PGA1_65p00390 at 54.601 kb on + strand, within PGA1_65p00390 at 54.631 kb on - strand, within PGA1_65p00390 at 54.633 kb on + strand, within PGA1_65p00390 at 54.641 kb on - strand, within PGA1_65p00390 at 54.668 kb on - strand, within PGA1_65p00390 at 54.762 kb on - strand, within PGA1_65p00390 at 54.788 kb on + strand, within PGA1_65p00390 at 54.816 kb on + strand, within PGA1_65p00390 at 54.896 kb on - strand at 54.912 kb on + strand at 54.945 kb on - strand at 54.992 kb on + strand at 55.006 kb on + strand at 55.028 kb on - strand at 55.202 kb on - strand at 55.227 kb on + strand, within PGA1_65p00400 at 55.568 kb on + strand, within PGA1_65p00400 at 55.664 kb on - strand, within PGA1_65p00400 at 55.668 kb on + strand, within PGA1_65p00400 at 55.890 kb on - strand at 55.911 kb on - strand at 55.992 kb on - strand, within PGA1_65p00410 at 56.313 kb on - strand, within PGA1_65p00410 at 56.593 kb on + strand, within PGA1_65p00410 at 56.641 kb on - strand, within PGA1_65p00410
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 54,174 - PGA1_65p00390 0.28 -0.9 54,319 + PGA1_65p00390 0.40 -0.7 54,407 + PGA1_65p00390 0.48 -0.3 54,415 - PGA1_65p00390 0.49 -0.3 54,601 + PGA1_65p00390 0.65 +1.8 54,631 - PGA1_65p00390 0.67 +0.6 54,633 + PGA1_65p00390 0.67 +0.8 54,641 - PGA1_65p00390 0.68 -1.4 54,668 - PGA1_65p00390 0.70 -1.9 54,762 - PGA1_65p00390 0.79 -0.0 54,788 + PGA1_65p00390 0.81 +0.1 54,816 + PGA1_65p00390 0.83 -0.1 54,896 - +0.6 54,912 + +0.8 54,945 - +0.2 54,992 + +1.2 55,006 + +0.5 55,028 - +2.0 55,202 - -1.1 55,227 + PGA1_65p00400 0.10 -2.0 55,568 + PGA1_65p00400 0.62 -0.9 55,664 - PGA1_65p00400 0.77 -1.1 55,668 + PGA1_65p00400 0.77 -1.7 55,890 - -1.7 55,911 - -1.1 55,992 - PGA1_65p00410 0.11 -1.1 56,313 - PGA1_65p00410 0.33 +1.1 56,593 + PGA1_65p00410 0.53 +0.4 56,641 - PGA1_65p00410 0.56 -2.5
Or see this region's nucleotide sequence