Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00330 and PGA1_65p00340 overlap by 2 nucleotides PGA1_65p00340 and PGA1_65p00350 are separated by 934 nucleotides
PGA1_65p00330: PGA1_65p00330 - type I secretion system ATPase, at 43,016 to 44,812
_65p00330
PGA1_65p00340: PGA1_65p00340 - Sulfotransferase family., at 44,811 to 46,031
_65p00340
PGA1_65p00350: PGA1_65p00350 - hemolysin-like protein, at 46,966 to 48,567
_65p00350
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 44.215 kb on - strand, within PGA1_65p00330 at 44.309 kb on - strand, within PGA1_65p00330 at 44.367 kb on + strand, within PGA1_65p00330 at 45.013 kb on - strand at 45.028 kb on + strand, within PGA1_65p00340 at 45.033 kb on + strand, within PGA1_65p00340 at 45.055 kb on + strand, within PGA1_65p00340 at 45.217 kb on + strand, within PGA1_65p00340 at 45.240 kb on + strand, within PGA1_65p00340 at 45.248 kb on - strand, within PGA1_65p00340 at 45.405 kb on - strand, within PGA1_65p00340 at 45.423 kb on - strand, within PGA1_65p00340 at 45.474 kb on - strand, within PGA1_65p00340 at 45.535 kb on + strand, within PGA1_65p00340 at 45.748 kb on - strand, within PGA1_65p00340 at 45.784 kb on + strand, within PGA1_65p00340 at 45.816 kb on + strand, within PGA1_65p00340 at 46.055 kb on - strand at 46.075 kb on - strand at 46.075 kb on - strand at 46.085 kb on - strand at 46.163 kb on - strand at 46.229 kb on + strand at 46.229 kb on + strand at 46.229 kb on + strand at 46.237 kb on - strand at 46.237 kb on - strand at 46.264 kb on + strand at 46.264 kb on + strand at 46.264 kb on + strand at 46.272 kb on - strand at 46.276 kb on + strand at 46.284 kb on - strand at 46.322 kb on + strand at 46.336 kb on + strand at 46.355 kb on - strand at 46.366 kb on + strand at 46.530 kb on - strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.545 kb on - strand at 46.545 kb on - strand at 46.561 kb on + strand at 46.566 kb on + strand at 46.569 kb on - strand at 46.571 kb on + strand at 46.579 kb on - strand at 46.665 kb on + strand at 46.665 kb on + strand at 46.684 kb on - strand at 46.750 kb on - strand at 46.797 kb on - strand at 46.802 kb on - strand at 46.846 kb on + strand at 46.854 kb on - strand at 46.881 kb on + strand at 46.893 kb on + strand at 46.901 kb on - strand at 46.909 kb on + strand at 46.919 kb on + strand at 46.949 kb on + strand at 46.949 kb on + strand at 46.955 kb on - strand at 46.983 kb on + strand at 46.990 kb on + strand at 46.998 kb on - strand at 46.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 44,215 - PGA1_65p00330 0.67 -0.9 44,309 - PGA1_65p00330 0.72 -1.4 44,367 + PGA1_65p00330 0.75 -1.6 45,013 - +1.1 45,028 + PGA1_65p00340 0.18 -0.8 45,033 + PGA1_65p00340 0.18 +0.4 45,055 + PGA1_65p00340 0.20 +0.3 45,217 + PGA1_65p00340 0.33 -0.5 45,240 + PGA1_65p00340 0.35 -1.0 45,248 - PGA1_65p00340 0.36 -0.6 45,405 - PGA1_65p00340 0.49 -2.0 45,423 - PGA1_65p00340 0.50 +0.4 45,474 - PGA1_65p00340 0.54 -2.1 45,535 + PGA1_65p00340 0.59 -1.7 45,748 - PGA1_65p00340 0.77 -2.6 45,784 + PGA1_65p00340 0.80 -1.4 45,816 + PGA1_65p00340 0.82 -1.8 46,055 - -0.7 46,075 - -1.8 46,075 - -0.4 46,085 - -0.6 46,163 - +0.3 46,229 + +0.2 46,229 + +0.2 46,229 + +0.1 46,237 - -1.3 46,237 - +0.9 46,264 + +0.3 46,264 + -1.1 46,264 + +0.7 46,272 - -1.0 46,276 + +0.2 46,284 - +0.2 46,322 + -1.1 46,336 + +1.3 46,355 - +0.7 46,366 + +1.0 46,530 - +0.0 46,537 + +0.1 46,537 + -1.0 46,537 + -0.1 46,537 + +0.4 46,537 + +0.2 46,545 - +0.8 46,545 - +0.3 46,561 + +0.6 46,566 + +0.5 46,569 - -0.2 46,571 + +1.2 46,579 - +0.5 46,665 + -0.1 46,665 + -1.2 46,684 - -0.6 46,750 - +0.8 46,797 - +0.4 46,802 - +0.0 46,846 + -0.1 46,854 - -0.8 46,881 + +0.2 46,893 + -0.2 46,901 - +0.9 46,909 + -1.4 46,919 + -0.4 46,949 + -0.4 46,949 + -0.3 46,955 - -0.2 46,983 + -0.2 46,990 + +0.3 46,998 - -2.9 46,998 - -0.7
Or see this region's nucleotide sequence