Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03990 and PGA1_c04000 overlap by 11 nucleotides PGA1_c04000 and PGA1_c04010 are separated by 162 nucleotides PGA1_c04010 and PGA1_c04020 are separated by 86 nucleotides
PGA1_c03990: PGA1_c03990 - putative peptidase M22, at 386,092 to 386,688
_c03990
PGA1_c04000: PGA1_c04000 - nitrogen fixation protein nifU-like protein, at 386,678 to 387,241
_c04000
PGA1_c04010: PGA1_c04010 - putative universal stress protein, at 387,404 to 387,859
_c04010
PGA1_c04020: PGA1_c04020 - putative branched-chain-amino-acid aminotransferase, at 387,946 to 388,812
_c04020
Position (kb) 387
388 Strain fitness (log2 ratio) -2
-1
0
1
2 at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.259 kb on - strand at 387.341 kb on + strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.349 kb on - strand at 387.381 kb on - strand at 387.514 kb on - strand, within PGA1_c04010 at 387.601 kb on - strand, within PGA1_c04010 at 387.629 kb on + strand, within PGA1_c04010 at 387.828 kb on + strand at 387.875 kb on - strand at 387.883 kb on - strand at 387.901 kb on + strand at 387.912 kb on + strand at 387.917 kb on - strand at 387.971 kb on + strand at 387.973 kb on - strand at 388.147 kb on - strand, within PGA1_c04020 at 388.212 kb on + strand, within PGA1_c04020 at 388.338 kb on + strand, within PGA1_c04020 at 388.373 kb on - strand, within PGA1_c04020 at 388.388 kb on - strand, within PGA1_c04020 at 388.422 kb on - strand, within PGA1_c04020 at 388.446 kb on + strand, within PGA1_c04020 at 388.446 kb on + strand, within PGA1_c04020 at 388.454 kb on - strand, within PGA1_c04020 at 388.502 kb on - strand, within PGA1_c04020 at 388.645 kb on - strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.665 kb on + strand, within PGA1_c04020 at 388.673 kb on - strand, within PGA1_c04020 at 388.688 kb on - strand, within PGA1_c04020
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 387,259 - +1.0 387,259 - -0.5 387,259 - +0.3 387,259 - -0.5 387,341 + +1.2 387,349 - -0.5 387,349 - +0.9 387,349 - +0.4 387,349 - -1.1 387,381 - +0.3 387,514 - PGA1_c04010 0.24 -0.7 387,601 - PGA1_c04010 0.43 +2.5 387,629 + PGA1_c04010 0.49 +1.1 387,828 + +1.2 387,875 - +0.1 387,883 - -0.9 387,901 + +1.2 387,912 + +0.3 387,917 - -0.5 387,971 + +0.9 387,973 - -0.1 388,147 - PGA1_c04020 0.23 +0.2 388,212 + PGA1_c04020 0.31 -0.6 388,338 + PGA1_c04020 0.45 +0.0 388,373 - PGA1_c04020 0.49 +0.4 388,388 - PGA1_c04020 0.51 +0.9 388,422 - PGA1_c04020 0.55 +1.4 388,446 + PGA1_c04020 0.58 -1.1 388,446 + PGA1_c04020 0.58 -2.5 388,454 - PGA1_c04020 0.59 -1.5 388,502 - PGA1_c04020 0.64 +0.3 388,645 - PGA1_c04020 0.81 -2.3 388,665 + PGA1_c04020 0.83 +0.1 388,665 + PGA1_c04020 0.83 +0.4 388,665 + PGA1_c04020 0.83 +0.3 388,673 - PGA1_c04020 0.84 +1.8 388,688 - PGA1_c04020 0.86 +1.1
Or see this region's nucleotide sequence